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The map label for this gene is rpoF

Identifier: 15897651

GI number: 15897651

Start: 636420

End: 636761

Strand: Reverse

Name: rpoF

Synonym: SSO0751

Alternate gene names: NA

Gene position: 636761-636420 (Counterclockwise)

Preceding gene: 15897652

Following gene: 15897650

Centisome position: 21.28

GC content: 30.99

Gene sequence:

>342_bases
TTGTCATCTGTATATATAGTTGAGGAGCATTATATTCCTTATTCAGTAGCGAAAAAATTACTAACTGATGTAATTAGATC
TGGAGGTTCGTCTAATTTATTGCAAAGGACTTATGATTATTTAAATAGTGTGGAGAAATGTGATGCGGAGTCTGCTCAGA
AGGTTATTGAAGAATTAAGTAATATCGTAAGTAGAGAAGATGTTAGAGCTATTCTAGCTAGTATCTGTCCTACTACATCT
GATGAGGTAAGGAGTATTTTAGTAATGGATACTAATAAGACATATACTTCTGAGGATATACAAAAAATAATTGATATAAT
TAGGAAATACATCAAGAGTTGA

Upstream 100 bases:

>100_bases
AGAGCATATTTAGTTTCGGTTACATTGGGTGATAAGGAAAAGGTGATAATTGTTAGGCCGGAACATTTAGTTCCTTTTAA
TTCAAGTGGGTGATTAGTAT

Downstream 100 bases:

>100_bases
GTTTTTACTTTTAGAATCTATTACTACTTAGGGAAGTAGAATTGCAAAGAAAAAGGATAGTAAGAGAGCGAGTAGTTTAT
GTTTTAGATTATATGAGAGA

Product: DNA-directed RNA polymerase, subunit F (rpoF)

Products: diphosphate; RNAn+1

Alternate protein names: NA

Number of amino acids: Translated: 113; Mature: 112

Protein sequence:

>113_residues
MSSVYIVEEHYIPYSVAKKLLTDVIRSGGSSNLLQRTYDYLNSVEKCDAESAQKVIEELSNIVSREDVRAILASICPTTS
DEVRSILVMDTNKTYTSEDIQKIIDIIRKYIKS

Sequences:

>Translated_113_residues
MSSVYIVEEHYIPYSVAKKLLTDVIRSGGSSNLLQRTYDYLNSVEKCDAESAQKVIEELSNIVSREDVRAILASICPTTS
DEVRSILVMDTNKTYTSEDIQKIIDIIRKYIKS
>Mature_112_residues
SSVYIVEEHYIPYSVAKKLLTDVIRSGGSSNLLQRTYDYLNSVEKCDAESAQKVIEELSNIVSREDVRAILASICPTTSD
EVRSILVMDTNKTYTSEDIQKIIDIIRKYIKS

Specific function: Unknown

COG id: COG1460

COG function: function code S; Uncharacterized protein conserved in archaea

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 2.7.7.6

Molecular weight: Translated: 12811; Mature: 12680

Theoretical pI: Translated: 4.90; Mature: 4.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSVYIVEEHYIPYSVAKKLLTDVIRSGGSSNLLQRTYDYLNSVEKCDAESAQKVIEELS
CCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
NIVSREDVRAILASICPTTSDEVRSILVMDTNKTYTSEDIQKIIDIIRKYIKS
HHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SSVYIVEEHYIPYSVAKKLLTDVIRSGGSSNLLQRTYDYLNSVEKCDAESAQKVIEELS
CCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
NIVSREDVRAILASICPTTSDEVRSILVMDTNKTYTSEDIQKIIDIIRKYIKS
HHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: nucleoside triphosphate; RNAn

Specific reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1)

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA