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The map label for this gene is 15897638

Identifier: 15897638

GI number: 15897638

Start: 627207

End: 627908

Strand: Reverse

Name: 15897638

Synonym: SSO0737

Alternate gene names: NA

Gene position: 627908-627207 (Counterclockwise)

Preceding gene: 15897639

Following gene: 15897637

Centisome position: 20.98

GC content: 35.04

Gene sequence:

>702_bases
ATGACGAAGGAGCGTGATTATGTAATAGTTAAATATGAGTCACATGGAGAGAGGTTTGAGATATTAGCTAAGCCAAAAGA
AGCATTAGCTTTTAGAAGTGGGAAGAGCATAAGTCTTTCTGATGTAGTGGTTTCTGATACTATTTATAAGGACGTAAAGA
AAGGTTTAAAAGCGTCTCCAGCATCACTTAAAAAAGTTTTTGGTACTACCGATTTCGAGACAATTGTAAAAGAAATTTTA
CTTAAAGGTGAATTACCAGTAACTGCAGAACAAAGGAAAGAAATGCTAGAAACTAAGAGAAAGCAAATAATTGATTTTAT
TCATAGGAACGCAGTTGATCCAAAAACTAATTTGCCAATTCCGCCAACCAGATTAGAGATGGCAATGGAACAAGCTAGAA
TACAAATCGATTTAAACAAAGACGTGGAAGCACAAGCTATGCAAATAGTAAAGGAGATTTCTAAGATAATTCCAATTAAA
ATAGCAAGGGCTTTGCTTAGTATTAAAGTACCATCAGAATATAGCTCTAAGGTTAAATCTCAATTGCATAACTTAGGGGA
GGTAAAAAAGGCCAATTGGTTAGAAGATGGTACGCTACTTGCGGAATTGGAAATACCTGCCGGTGCACAGCAAGACGTTA
TAGATAAGTTAAATAGTCTTACAAAAGGAGAAGTTGAAGTTAAAGTATTGCAAGTGAGATGA

Upstream 100 bases:

>100_bases
AAATAGGATATGCCTCAACCCAGACTGGGTTATTTCTGAAAATGACTAATGAAGATAAGAATATGTATTTACAGAAGTTA
TAATAAGGTGGATTTTTTTC

Downstream 100 bases:

>100_bases
ACATGAGTCAGTCCCAGAAAATTGTCTTACAGCCAAGGTCAATAGTAGTTCCTGGTGAGTTATTAGCAGAAGGCGAATTT
CAGATTCCTTGGTCTCCTTA

Product: putative RNA-associated protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 233; Mature: 232

Protein sequence:

>233_residues
MTKERDYVIVKYESHGERFEILAKPKEALAFRSGKSISLSDVVVSDTIYKDVKKGLKASPASLKKVFGTTDFETIVKEIL
LKGELPVTAEQRKEMLETKRKQIIDFIHRNAVDPKTNLPIPPTRLEMAMEQARIQIDLNKDVEAQAMQIVKEISKIIPIK
IARALLSIKVPSEYSSKVKSQLHNLGEVKKANWLEDGTLLAELEIPAGAQQDVIDKLNSLTKGEVEVKVLQVR

Sequences:

>Translated_233_residues
MTKERDYVIVKYESHGERFEILAKPKEALAFRSGKSISLSDVVVSDTIYKDVKKGLKASPASLKKVFGTTDFETIVKEIL
LKGELPVTAEQRKEMLETKRKQIIDFIHRNAVDPKTNLPIPPTRLEMAMEQARIQIDLNKDVEAQAMQIVKEISKIIPIK
IARALLSIKVPSEYSSKVKSQLHNLGEVKKANWLEDGTLLAELEIPAGAQQDVIDKLNSLTKGEVEVKVLQVR
>Mature_232_residues
TKERDYVIVKYESHGERFEILAKPKEALAFRSGKSISLSDVVVSDTIYKDVKKGLKASPASLKKVFGTTDFETIVKEILL
KGELPVTAEQRKEMLETKRKQIIDFIHRNAVDPKTNLPIPPTRLEMAMEQARIQIDLNKDVEAQAMQIVKEISKIIPIKI
ARALLSIKVPSEYSSKVKSQLHNLGEVKKANWLEDGTLLAELEIPAGAQQDVIDKLNSLTKGEVEVKVLQVR

Specific function: Unknown

COG id: COG1500

COG function: function code J; Predicted exosome subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the SDO1/SBDS family [H]

Homologues:

Organism=Homo sapiens, GI28416940, Length=163, Percent_Identity=29.4478527607362, Blast_Score=82, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI25144459, Length=229, Percent_Identity=24.0174672489083, Blast_Score=84, Evalue=5e-17,
Organism=Saccharomyces cerevisiae, GI6323050, Length=164, Percent_Identity=27.4390243902439, Blast_Score=77, Evalue=2e-15,
Organism=Drosophila melanogaster, GI24659572, Length=213, Percent_Identity=29.1079812206573, Blast_Score=97, Evalue=7e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009022
- InterPro:   IPR018978
- InterPro:   IPR018023
- InterPro:   IPR019783
- InterPro:   IPR002140 [H]

Pfam domain/function: PF01172 SBDS; PF09377 SBDS_C [H]

EC number: NA

Molecular weight: Translated: 26200; Mature: 26069

Theoretical pI: Translated: 9.81; Mature: 9.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKERDYVIVKYESHGERFEILAKPKEALAFRSGKSISLSDVVVSDTIYKDVKKGLKASP
CCCCCCEEEEEECCCCCEEEEECCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCH
ASLKKVFGTTDFETIVKEILLKGELPVTAEQRKEMLETKRKQIIDFIHRNAVDPKTNLPI
HHHHHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
PPTRLEMAMEQARIQIDLNKDVEAQAMQIVKEISKIIPIKIARALLSIKVPSEYSSKVKS
CHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
QLHNLGEVKKANWLEDGTLLAELEIPAGAQQDVIDKLNSLTKGEVEVKVLQVR
HHHHHHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCCCEEEEEEEEC
>Mature Secondary Structure 
TKERDYVIVKYESHGERFEILAKPKEALAFRSGKSISLSDVVVSDTIYKDVKKGLKASP
CCCCCEEEEEECCCCCEEEEECCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCH
ASLKKVFGTTDFETIVKEILLKGELPVTAEQRKEMLETKRKQIIDFIHRNAVDPKTNLPI
HHHHHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
PPTRLEMAMEQARIQIDLNKDVEAQAMQIVKEISKIIPIKIARALLSIKVPSEYSSKVKS
CHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
QLHNLGEVKKANWLEDGTLLAELEIPAGAQQDVIDKLNSLTKGEVEVKVLQVR
HHHHHHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCCCEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10382966 [H]