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The map label for this gene is rplW

Identifier: 15897621

GI number: 15897621

Start: 610623

End: 610868

Strand: Reverse

Name: rplW

Synonym: SSO6401

Alternate gene names: 15897621

Gene position: 610868-610623 (Counterclockwise)

Preceding gene: 15897622

Following gene: 15897620

Centisome position: 20.42

GC content: 32.52

Gene sequence:

>246_bases
ATGATTCAAATGGCTTTAGCTACAGAGAAGGCATTAAAACTTATTGAGTCCTATAATACGCTTACATTAATAGTAGATAA
GAGTGATACTAAAGACGACATTAAGAAATCTGTAGAGAGATTATTTAACGTTAAGGTGGTAAAAGTCAACGTAGTTATAA
CACCTCAAGGTTACAAGAAGGCATATGTAAAATTAGCACCAGAATATAAGGCAAGTGATATAGCCCATAAATTGGGCATA
TTTTGA

Upstream 100 bases:

>100_bases
CATTTGGCTCCCGGAGCTCATCCGGGTAGACTTACTATTTATACCGAAAGTAGTATAAAGATTTTAGACGAACGATTAAG
TAAGAGAGTGGTGAGTTAGA

Downstream 100 bases:

>100_bases
GGTGATATAAAATGGGTAAGAATTTGTTACAGCAAAGGGCAGGCAAGGGTTCTCCAACTTTTAGAAATCCAGGCTGGTTA
AGAATAGGTAAGGTAAGATA

Product: 50S ribosomal protein L23P

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 81; Mature: 81

Protein sequence:

>81_residues
MIQMALATEKALKLIESYNTLTLIVDKSDTKDDIKKSVERLFNVKVVKVNVVITPQGYKKAYVKLAPEYKASDIAHKLGI
F

Sequences:

>Translated_81_residues
MIQMALATEKALKLIESYNTLTLIVDKSDTKDDIKKSVERLFNVKVVKVNVVITPQGYKKAYVKLAPEYKASDIAHKLGI
F
>Mature_81_residues
MIQMALATEKALKLIESYNTLTLIVDKSDTKDDIKKSVERLFNVKVVKVNVVITPQGYKKAYVKLAPEYKASDIAHKLGI
F

Specific function: Binds to 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome

COG id: COG0089

COG function: function code J; Ribosomal protein L23

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L23P family

Homologues:

Organism=Homo sapiens, GI17105394, Length=80, Percent_Identity=51.25, Blast_Score=82, Evalue=8e-17,
Organism=Homo sapiens, GI310129763, Length=79, Percent_Identity=44.3037974683544, Blast_Score=66, Evalue=7e-12,
Organism=Caenorhabditis elegans, GI17508675, Length=80, Percent_Identity=50, Blast_Score=78, Evalue=7e-16,
Organism=Caenorhabditis elegans, GI17569427, Length=80, Percent_Identity=48.75, Blast_Score=77, Evalue=2e-15,
Organism=Saccharomyces cerevisiae, GI6324445, Length=79, Percent_Identity=41.7721518987342, Blast_Score=64, Evalue=6e-12,
Organism=Drosophila melanogaster, GI24655502, Length=81, Percent_Identity=46.9135802469136, Blast_Score=74, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RL23_SULSO (Q97ZQ4)

Other databases:

- EMBL:   AE006641
- PIR:   A99220
- RefSeq:   NP_342226.1
- ProteinModelPortal:   Q97ZQ4
- SMR:   Q97ZQ4
- GeneID:   1454983
- GenomeReviews:   AE006641_GR
- KEGG:   sso:SSO6401
- NMPDR:   fig|273057.1.peg.649
- HOGENOM:   HBG439330
- OMA:   RGEKKAY
- PhylomeDB:   Q97ZQ4
- ProtClustDB:   PRK14548
- BioCyc:   SSOL273057:SSO6401-MONOMER
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_01369_A
- InterPro:   IPR012677
- InterPro:   IPR019985
- InterPro:   IPR012678
- InterPro:   IPR001014
- InterPro:   IPR013025
- Gene3D:   G3DSA:3.30.70.330
- TIGRFAMs:   TIGR03636

Pfam domain/function: PF00276 Ribosomal_L23; SSF54189 L23_L15e_core

EC number: NA

Molecular weight: Translated: 9127; Mature: 9127

Theoretical pI: Translated: 10.08; Mature: 10.08

Prosite motif: PS00050 RIBOSOMAL_L23

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIQMALATEKALKLIESYNTLTLIVDKSDTKDDIKKSVERLFNVKVVKVNVVITPQGYKK
CEEEHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHCEEEEEEEEEECCCCCCE
AYVKLAPEYKASDIAHKLGIF
EEEEECCCCCHHHHHHHHCCC
>Mature Secondary Structure
MIQMALATEKALKLIESYNTLTLIVDKSDTKDDIKKSVERLFNVKVVKVNVVITPQGYKK
CEEEHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHCEEEEEEEEEECCCCCCE
AYVKLAPEYKASDIAHKLGIF
EEEEECCCCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11427726