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The map label for this gene is rps4E [H]

Identifier: 15897612

GI number: 15897612

Start: 605928

End: 606647

Strand: Reverse

Name: rps4E [H]

Synonym: SSO0705

Alternate gene names: 15897612

Gene position: 606647-605928 (Counterclockwise)

Preceding gene: 15897613

Following gene: 15897611

Centisome position: 20.27

GC content: 34.58

Gene sequence:

>720_bases
ATGGCGCATATAACAAGATTTGAAGCACCTTGGTTTTTAATGATAAGTAAAAAACAATATAAGTGGACGGTTAGACCTAA
TGCTGGACCTCACTCTATTGAGAAAAGCATACCTTTAGCTGTTGTAATTAGAGATTATCTGAAACTTGCGGGGACGATAA
GAGAGGCTAAGCATATAATATTTGATGGCAAAGTTTTAGTGGATGGTAAGGTAAGGAAAGACTATAAGTATCCTGTTGGA
CTTATGGATATTGTTTCAATTCCCTCTGCTGACCTATATTTTAGGGTTCTTCCAGATAATGTTAGGTTCATGAGATTTTC
CAAGATATCTGCTGATGAGGCCCGGTATAAGTACGTTAGAATTATAAATAAAACTACGATAAAGGAAGGAAGAATTCAGC
TTAATCTAGAGGATGGAAGAAATATCCTTGTAGATAAAGAGACTGCCAAGAATTTCAAAACGCTTATGACGTTAAAGATC
GAATTACCTAGCCAACAAATATTAGATTCATTCACTATCTCAGAAAGATCATATGCGATTTTCGTAGGAGGTAGAAACGT
CGGTATTCACGGTATTGTTAAGAATATAAATTTGAGTAAGTTTAAGTCTAGAAAATACAGTGTGATAACCTTAGAAAGTA
GGGACGGTAATACTTATCAGACTAATATTATGAACGTAATGAGTATAGGTAGGGAAAAATCTGACTTGAGAGTTGATTAA

Upstream 100 bases:

>100_bases
TATGTGTGGATTCATGCGTCTAAAGTGATGATAACTAAGCTAGATCTGAGTGATCCAAGAAGACGGGAAAAGTTAGAAAA
ATCTAAGAAGTGATGGAAAA

Downstream 100 bases:

>100_bases
AATGGCAGAGTCTACTTTACCTCTTAGCCAGAATCCAATGAGGAAGGTTAAATTAAGCAAGGTTACTGTTAACATAGGAC
TAGGTGAGTCTGGAGATAGG

Product: 30S ribosomal protein S4e

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 239; Mature: 238

Protein sequence:

>239_residues
MAHITRFEAPWFLMISKKQYKWTVRPNAGPHSIEKSIPLAVVIRDYLKLAGTIREAKHIIFDGKVLVDGKVRKDYKYPVG
LMDIVSIPSADLYFRVLPDNVRFMRFSKISADEARYKYVRIINKTTIKEGRIQLNLEDGRNILVDKETAKNFKTLMTLKI
ELPSQQILDSFTISERSYAIFVGGRNVGIHGIVKNINLSKFKSRKYSVITLESRDGNTYQTNIMNVMSIGREKSDLRVD

Sequences:

>Translated_239_residues
MAHITRFEAPWFLMISKKQYKWTVRPNAGPHSIEKSIPLAVVIRDYLKLAGTIREAKHIIFDGKVLVDGKVRKDYKYPVG
LMDIVSIPSADLYFRVLPDNVRFMRFSKISADEARYKYVRIINKTTIKEGRIQLNLEDGRNILVDKETAKNFKTLMTLKI
ELPSQQILDSFTISERSYAIFVGGRNVGIHGIVKNINLSKFKSRKYSVITLESRDGNTYQTNIMNVMSIGREKSDLRVD
>Mature_238_residues
AHITRFEAPWFLMISKKQYKWTVRPNAGPHSIEKSIPLAVVIRDYLKLAGTIREAKHIIFDGKVLVDGKVRKDYKYPVGL
MDIVSIPSADLYFRVLPDNVRFMRFSKISADEARYKYVRIINKTTIKEGRIQLNLEDGRNILVDKETAKNFKTLMTLKIE
LPSQQILDSFTISERSYAIFVGGRNVGIHGIVKNINLSKFKSRKYSVITLESRDGNTYQTNIMNVMSIGREKSDLRVD

Specific function: Unknown

COG id: COG1471

COG function: function code J; Ribosomal protein S4E

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI4506727, Length=228, Percent_Identity=29.3859649122807, Blast_Score=109, Evalue=2e-24,
Organism=Homo sapiens, GI4506725, Length=229, Percent_Identity=28.82096069869, Blast_Score=105, Evalue=3e-23,
Organism=Homo sapiens, GI88703062, Length=228, Percent_Identity=28.5087719298246, Blast_Score=102, Evalue=4e-22,
Organism=Caenorhabditis elegans, GI17543386, Length=234, Percent_Identity=34.1880341880342, Blast_Score=124, Evalue=6e-29,
Organism=Saccharomyces cerevisiae, GI6322605, Length=230, Percent_Identity=31.304347826087, Blast_Score=109, Evalue=4e-25,
Organism=Saccharomyces cerevisiae, GI6321997, Length=230, Percent_Identity=31.304347826087, Blast_Score=109, Evalue=4e-25,
Organism=Drosophila melanogaster, GI24663672, Length=230, Percent_Identity=29.5652173913043, Blast_Score=104, Evalue=6e-23,
Organism=Drosophila melanogaster, GI24663668, Length=230, Percent_Identity=29.5652173913043, Blast_Score=104, Evalue=6e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000876
- InterPro:   IPR022994
- InterPro:   IPR013845
- InterPro:   IPR013843
- InterPro:   IPR002942
- ProDom:   PD002667 [H]

Pfam domain/function: PF00900 Ribosomal_S4e; PF08071 RS4NT; PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 27520; Mature: 27388

Theoretical pI: Translated: 10.50; Mature: 10.50

Prosite motif: PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAHITRFEAPWFLMISKKQYKWTVRPNAGPHSIEKSIPLAVVIRDYLKLAGTIREAKHII
CCCCEEECCCEEEEEECCEEEEEECCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHCCEEE
FDGKVLVDGKVRKDYKYPVGLMDIVSIPSADLYFRVLPDNVRFMRFSKISADEARYKYVR
ECCEEEECCEECCCCCCCCCHHHHHCCCCCCEEEEECCCCEEEEEEECCCCCHHHEEEEE
IINKTTIKEGRIQLNLEDGRNILVDKETAKNFKTLMTLKIELPSQQILDSFTISERSYAI
EEECCEEECCEEEEEECCCCEEEEECHHHHCCEEEEEEEEECCHHHHHHHEEECCCEEEE
FVGGRNVGIHGIVKNINLSKFKSRKYSVITLESRDGNTYQTNIMNVMSIGREKSDLRVD
EECCCCCCEEEEEECCCHHHHCCCCEEEEEEECCCCCEEHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
AHITRFEAPWFLMISKKQYKWTVRPNAGPHSIEKSIPLAVVIRDYLKLAGTIREAKHII
CCCEEECCCEEEEEECCEEEEEECCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHCCEEE
FDGKVLVDGKVRKDYKYPVGLMDIVSIPSADLYFRVLPDNVRFMRFSKISADEARYKYVR
ECCEEEECCEECCCCCCCCCHHHHHCCCCCCEEEEECCCCEEEEEEECCCCCHHHEEEEE
IINKTTIKEGRIQLNLEDGRNILVDKETAKNFKTLMTLKIELPSQQILDSFTISERSYAI
EEECCEEECCEEEEEECCCCEEEEECHHHHCCEEEEEEEEECCHHHHHHHEEECCCEEEE
FVGGRNVGIHGIVKNINLSKFKSRKYSVITLESRDGNTYQTNIMNVMSIGREKSDLRVD
EECCCCCCEEEEEECCCHHHHCCCCEEEEEEECCCCCEEHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA