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The map label for this gene is yvrB [H]

Identifier: 15897412

GI number: 15897412

Start: 418707

End: 419693

Strand: Direct

Name: yvrB [H]

Synonym: SSO0486

Alternate gene names: 15897412

Gene position: 418707-419693 (Clockwise)

Preceding gene: 15897411

Following gene: 15897413

Centisome position: 13.99

GC content: 36.17

Gene sequence:

>987_bases
ATGGTTCGTTTAAGTGGTATTTTTTTAATTATAGGATTTATTATTTCGTTTTTGCTTGGGTTACTCTACGGTGATGTTAC
TATACCGATTAGCGAGATTTTCCATCCTAGCGGAGTTTACGCTTATATATTGCTTAACATAAGATTACCTACCTTAACTG
TGGCAATTCTCATAGGTGCAATCTTATCCACATCTGGGGCAGTTCTTCAGATGTTATTGAGAAATCCACTCGTAGATCCC
TATATAAGTGGGACAGCATCTGGTGGGGCTTTTGGGGCAGTTCTTACGTATTTACTGCTGATGCTTAATTTGCCCTTTTC
ATGGATAATATACTTCCAACCTTTGGTAGCATTCTTCACTGCAACGCTAGCAACCTTGATAACCATAATGATTGGAAAGA
AATCAGGATATCTTGGTCTTGTGATTGGTGGTGTTTTAGTCTCGTTCATTTTCTCATCTCTGGTAACGGTCATATTATCA
GTAATGAGCGCTAAATATCCTCAAATACCCCCACTTACCTTTTGGCTCTTGGGAGATATTAGCGTAGTTGGCTGGTTTAA
TGCCATAATATTATCATTATTTGCCATTCTCTTACTTTACTTTAGCCTATCAAATTCTAGATTGATAGACTTACTATCAA
TAAGTGATGAGATTAGTTATTCTCAAGGGGTAAATCCTAATAAGCAGAGAGTCTTCTGGCTATTATTCATAAGTCTTGTA
GTAGCTTACTGTGTTTCAATAGCCGGTATTATAGGATTTTTAGGCATAATAGTTCCACATATTATTAGGAGATTAATTGG
AGGAAACACAAGCCAGCTAGTGATGTATTCCTCACTATTAGGTTCAACAATCTTAATTCTAAGTAACATTTTATCTCATG
GTATATTTGGTTATTTTATTCCTCTAACTGCGCTTCTTTCAATCATGGGAGCTCCAATAATGATATTCGCGTTGGTGAGA
AAAGATGTTAACGTTGAGGAATATTAG

Upstream 100 bases:

>100_bases
CATACAAGTTATTAAACTCATAATTGAGGGAAAGGCGCCACATTTCATTTCAGACAATTGGGTGATAAACAATCTTAATG
TAACTCTGCCGGTGTTTTAG

Downstream 100 bases:

>100_bases
TGTAAGATTAGGAGGCAAATTAATTTTGTCAAGCATTTCTTTTAGTGCAGTAAAAGGTATTAATGTGATTTTAGGACCAA
ATGGAAGTGGTAAGACTACG

Product: Iron (III) ABC transporter, permease protein (HEMU 1)

Products: ADP; phosphate; iron dicitrate [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 328; Mature: 328

Protein sequence:

>328_residues
MVRLSGIFLIIGFIISFLLGLLYGDVTIPISEIFHPSGVYAYILLNIRLPTLTVAILIGAILSTSGAVLQMLLRNPLVDP
YISGTASGGAFGAVLTYLLLMLNLPFSWIIYFQPLVAFFTATLATLITIMIGKKSGYLGLVIGGVLVSFIFSSLVTVILS
VMSAKYPQIPPLTFWLLGDISVVGWFNAIILSLFAILLLYFSLSNSRLIDLLSISDEISYSQGVNPNKQRVFWLLFISLV
VAYCVSIAGIIGFLGIIVPHIIRRLIGGNTSQLVMYSSLLGSTILILSNILSHGIFGYFIPLTALLSIMGAPIMIFALVR
KDVNVEEY

Sequences:

>Translated_328_residues
MVRLSGIFLIIGFIISFLLGLLYGDVTIPISEIFHPSGVYAYILLNIRLPTLTVAILIGAILSTSGAVLQMLLRNPLVDP
YISGTASGGAFGAVLTYLLLMLNLPFSWIIYFQPLVAFFTATLATLITIMIGKKSGYLGLVIGGVLVSFIFSSLVTVILS
VMSAKYPQIPPLTFWLLGDISVVGWFNAIILSLFAILLLYFSLSNSRLIDLLSISDEISYSQGVNPNKQRVFWLLFISLV
VAYCVSIAGIIGFLGIIVPHIIRRLIGGNTSQLVMYSSLLGSTILILSNILSHGIFGYFIPLTALLSIMGAPIMIFALVR
KDVNVEEY
>Mature_328_residues
MVRLSGIFLIIGFIISFLLGLLYGDVTIPISEIFHPSGVYAYILLNIRLPTLTVAILIGAILSTSGAVLQMLLRNPLVDP
YISGTASGGAFGAVLTYLLLMLNLPFSWIIYFQPLVAFFTATLATLITIMIGKKSGYLGLVIGGVLVSFIFSSLVTVILS
VMSAKYPQIPPLTFWLLGDISVVGWFNAIILSLFAILLLYFSLSNSRLIDLLSISDEISYSQGVNPNKQRVFWLLFISLV
VAYCVSIAGIIGFLGIIVPHIIRRLIGGNTSQLVMYSSLLGSTILILSNILSHGIFGYFIPLTALLSIMGAPIMIFALVR
KDVNVEEY

Specific function: Probably part of an ABC transporter complex. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0609

COG function: function code P; ABC-type Fe3+-siderophore transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790740, Length=320, Percent_Identity=30.3125, Blast_Score=107, Evalue=7e-25,
Organism=Escherichia coli, GI1790741, Length=281, Percent_Identity=28.1138790035587, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1788004, Length=243, Percent_Identity=30.4526748971193, Blast_Score=82, Evalue=6e-17,
Organism=Escherichia coli, GI1786805, Length=311, Percent_Identity=26.6881028938907, Blast_Score=72, Evalue=7e-14,
Organism=Escherichia coli, GI1786347, Length=296, Percent_Identity=26.0135135135135, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1786804, Length=274, Percent_Identity=27.007299270073, Blast_Score=69, Evalue=5e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000522 [H]

Pfam domain/function: PF01032 FecCD [H]

EC number: NA

Molecular weight: Translated: 35683; Mature: 35683

Theoretical pI: Translated: 9.12; Mature: 9.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVRLSGIFLIIGFIISFLLGLLYGDVTIPISEIFHPSGVYAYILLNIRLPTLTVAILIGA
CCEEHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCEEEHEEEHHHHHHHHHHHHHH
ILSTSGAVLQMLLRNPLVDPYISGTASGGAFGAVLTYLLLMLNLPFSWIIYFQPLVAFFT
HHHCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
ATLATLITIMIGKKSGYLGLVIGGVLVSFIFSSLVTVILSVMSAKYPQIPPLTFWLLGDI
HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
SVVGWFNAIILSLFAILLLYFSLSNSRLIDLLSISDEISYSQGVNPNKQRVFWLLFISLV
HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
VAYCVSIAGIIGFLGIIVPHIIRRLIGGNTSQLVMYSSLLGSTILILSNILSHGIFGYFI
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PLTALLSIMGAPIMIFALVRKDVNVEEY
HHHHHHHHHCHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MVRLSGIFLIIGFIISFLLGLLYGDVTIPISEIFHPSGVYAYILLNIRLPTLTVAILIGA
CCEEHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCEEEHEEEHHHHHHHHHHHHHH
ILSTSGAVLQMLLRNPLVDPYISGTASGGAFGAVLTYLLLMLNLPFSWIIYFQPLVAFFT
HHHCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
ATLATLITIMIGKKSGYLGLVIGGVLVSFIFSSLVTVILSVMSAKYPQIPPLTFWLLGDI
HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
SVVGWFNAIILSLFAILLLYFSLSNSRLIDLLSISDEISYSQGVNPNKQRVFWLLFISLV
HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
VAYCVSIAGIIGFLGIIVPHIIRRLIGGNTSQLVMYSSLLGSTILILSNILSHGIFGYFI
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PLTALLSIMGAPIMIFALVRKDVNVEEY
HHHHHHHHHCHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; iron dicitrate [Periplasm]; H2O [C]

Specific reaction: ATP + iron dicitrate [Periplasm] + H2O = ADP + phosphate + iron dicitrate [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9639930; 9384377 [H]