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The map label for this gene is 15897223

Identifier: 15897223

GI number: 15897223

Start: 238363

End: 238896

Strand: Reverse

Name: 15897223

Synonym: SSO0281

Alternate gene names: NA

Gene position: 238896-238363 (Counterclockwise)

Preceding gene: 15897226

Following gene: 15897222

Centisome position: 7.98

GC content: 30.34

Gene sequence:

>534_bases
TTGCCCATTATAGTAAATATTGTCGATAATTGTACCACAATTACTACACACTATTTCTCCGTTCTTATTATCCCAAATTA
TTTCATTCGAACCACATGCAGGGCATTGCATATGAAAACAATAACTTTTATGGGGAATATACTTATTTTTGATAATGTGA
CTATAATGTCTGAGAAAAGTGAAACTACTTTAGACAAGATATACACAGCCTTAAACTCATCTAAACAGTTACCTAGTGAG
ATAATTTATCTTGTAAATTGGGATAAAGTTGATGTCTTCGTTGACTTAAAACAGCGAGGAAGGGTTACGATTGATGGTAT
AGATGAGCACTCTCTTATAATAAAGGACAAGGAAAATGGAAGATATACTGCTATGGTTTTGATAGTAGACGAAAATGAAA
AGGTAAGTTTTAAGAAAATATTAGATAAACTACATCAGTCAAAATCAATGAATTTAGAACTTTATCTTTCAATTGTAGAT
AAATATGGAGATGTAACGTATTATACTCTATCTGAGATAAAAATGTCAAAGTGA

Upstream 100 bases:

>100_bases
TATTCTTTAAGAAATTTTTAACTCGCAGTTCTTTAACTTGTATATCATCCTTGTAAAACTTATTATTTATTGAGATTATC
TCCGTACTCTCTGATTCATT

Downstream 100 bases:

>100_bases
CTGGATATGGTAAAGTTTGAAACAGTAAGAGGCATGAAAGATTATATTGGAATCGATGCAGAAAAAATTAGATACTTGGA
ATCTACCTTTAGAGACTTAG

Product: tRNA-splicing endonuclease subunit beta

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 177; Mature: 176

Protein sequence:

>177_residues
MPIIVNIVDNCTTITTHYFSVLIIPNYFIRTTCRALHMKTITFMGNILIFDNVTIMSEKSETTLDKIYTALNSSKQLPSE
IIYLVNWDKVDVFVDLKQRGRVTIDGIDEHSLIIKDKENGRYTAMVLIVDENEKVSFKKILDKLHQSKSMNLELYLSIVD
KYGDVTYYTLSEIKMSK

Sequences:

>Translated_177_residues
MPIIVNIVDNCTTITTHYFSVLIIPNYFIRTTCRALHMKTITFMGNILIFDNVTIMSEKSETTLDKIYTALNSSKQLPSE
IIYLVNWDKVDVFVDLKQRGRVTIDGIDEHSLIIKDKENGRYTAMVLIVDENEKVSFKKILDKLHQSKSMNLELYLSIVD
KYGDVTYYTLSEIKMSK
>Mature_176_residues
PIIVNIVDNCTTITTHYFSVLIIPNYFIRTTCRALHMKTITFMGNILIFDNVTIMSEKSETTLDKIYTALNSSKQLPSEI
IYLVNWDKVDVFVDLKQRGRVTIDGIDEHSLIIKDKENGRYTAMVLIVDENEKVSFKKILDKLHQSKSMNLELYLSIVDK
YGDVTYYTLSEIKMSK

Specific function: Unknown

COG id: COG1676

COG function: function code J; tRNA splicing endonuclease

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20472; Mature: 20341

Theoretical pI: Translated: 6.94; Mature: 6.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPIIVNIVDNCTTITTHYFSVLIIPNYFIRTTCRALHMKTITFMGNILIFDNVTIMSEKS
CCEEEEECCCCEEEHHHEEEEEEECCHHHHHHHHHHHHHEEHHHCCEEEEECEEEEECCC
ETTLDKIYTALNSSKQLPSEIIYLVNWDKVDVFVDLKQRGRVTIDGIDEHSLIIKDKENG
CHHHHHHHHHHCCCCCCCCCEEEEEECCEEEEEEEECCCCEEEEECCCCCEEEEEECCCC
RYTAMVLIVDENEKVSFKKILDKLHQSKSMNLELYLSIVDKYGDVTYYTLSEIKMSK
EEEEEEEEEECCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCEEEEEEEEEEECC
>Mature Secondary Structure 
PIIVNIVDNCTTITTHYFSVLIIPNYFIRTTCRALHMKTITFMGNILIFDNVTIMSEKS
CEEEEECCCCEEEHHHEEEEEEECCHHHHHHHHHHHHHEEHHHCCEEEEECEEEEECCC
ETTLDKIYTALNSSKQLPSEIIYLVNWDKVDVFVDLKQRGRVTIDGIDEHSLIIKDKENG
CHHHHHHHHHHCCCCCCCCCEEEEEECCEEEEEEEECCCCEEEEECCCCCEEEEEECCCC
RYTAMVLIVDENEKVSFKKILDKLHQSKSMNLELYLSIVDKYGDVTYYTLSEIKMSK
EEEEEEEEEECCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCEEEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA