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The map label for this gene is 15897219

Identifier: 15897219

GI number: 15897219

Start: 235569

End: 236009

Strand: Reverse

Name: 15897219

Synonym: SSO0276

Alternate gene names: NA

Gene position: 236009-235569 (Counterclockwise)

Preceding gene: 15897221

Following gene: 15897218

Centisome position: 7.89

GC content: 28.8

Gene sequence:

>441_bases
ATGAGTAGTGGAAGAAGAATCTCGAGCGAATTAAATAACCTAATAGATAAGACTGTTATTGTAAAAACTACTAATGGTAA
AACATATACTGGTCAACTTTATGCATATGAACTTTCACCATTTATCATAAGTTTAACAAATGTTAAGGATGATAGCAATA
ACACTTTCTATAAGTTAATGATAAATGGAAATTCAATTTCTGAGATAATAATTAAGAATCCTCCTCTATTTGAGCCAAGA
GAATTTGCGGAATTAGTTGAAAAATCCCTAAATTTAAGACCAGCTGATATAAAAGTTTACGATGAAACAAGTGTAGTAAC
AATTCTAGAAAAAATTAAAGTATCACAGAATGGAGTAGAAGGAAGCGGACCTATGGCACAAAGAATTTACGACTTATATA
ATGATTATATAAATAAAAAGAAAAAGGAATTAGGTCTATGA

Upstream 100 bases:

>100_bases
TATACTATTTATTTCACAACTTAGAATTATTTCTTGTGCCACTGATTCCATCATATTACTATTTAAGTTTTAATTTATTA
ACGTTATTGGGGACTATAAT

Downstream 100 bases:

>100_bases
CTGTATTTGAAGTAAAATATGAGGACTTAGCAGGGAGAATAGGAACCTTAAGAACAAGAAGTGGTACCTTAGAAACTCCA
GCATTCTTTCCAGTAATTAA

Product: hypothetical protein

Products: NA

Alternate protein names: Small Nuclear Ribonucleoprotein; Small Nuclear Ribonucleoprotein Homolog; Sm Ribonucleoprotein Core-Like Protein

Number of amino acids: Translated: 146; Mature: 145

Protein sequence:

>146_residues
MSSGRRISSELNNLIDKTVIVKTTNGKTYTGQLYAYELSPFIISLTNVKDDSNNTFYKLMINGNSISEIIIKNPPLFEPR
EFAELVEKSLNLRPADIKVYDETSVVTILEKIKVSQNGVEGSGPMAQRIYDLYNDYINKKKKELGL

Sequences:

>Translated_146_residues
MSSGRRISSELNNLIDKTVIVKTTNGKTYTGQLYAYELSPFIISLTNVKDDSNNTFYKLMINGNSISEIIIKNPPLFEPR
EFAELVEKSLNLRPADIKVYDETSVVTILEKIKVSQNGVEGSGPMAQRIYDLYNDYINKKKKELGL
>Mature_145_residues
SSGRRISSELNNLIDKTVIVKTTNGKTYTGQLYAYELSPFIISLTNVKDDSNNTFYKLMINGNSISEIIIKNPPLFEPRE
FAELVEKSLNLRPADIKVYDETSVVTILEKIKVSQNGVEGSGPMAQRIYDLYNDYINKKKKELGL

Specific function: Unknown

COG id: COG1958

COG function: function code K; Small nuclear ribonucleoprotein (snRNP) homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 16514; Mature: 16383

Theoretical pI: Translated: 8.72; Mature: 8.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSGRRISSELNNLIDKTVIVKTTNGKTYTGQLYAYELSPFIISLTNVKDDSNNTFYKLM
CCCCCHHHHHHHHHHCCEEEEEECCCCEEEEEEEEEECCCEEEEEECCCCCCCCEEEEEE
INGNSISEIIIKNPPLFEPREFAELVEKSLNLRPADIKVYDETSVVTILEKIKVSQNGVE
ECCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHCCCCCC
GSGPMAQRIYDLYNDYINKKKKELGL
CCCHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SSGRRISSELNNLIDKTVIVKTTNGKTYTGQLYAYELSPFIISLTNVKDDSNNTFYKLM
CCCCHHHHHHHHHHCCEEEEEECCCCEEEEEEEEEECCCEEEEEECCCCCCCCEEEEEE
INGNSISEIIIKNPPLFEPREFAELVEKSLNLRPADIKVYDETSVVTILEKIKVSQNGVE
ECCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHCCCCCC
GSGPMAQRIYDLYNDYINKKKKELGL
CCCHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA