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The map label for this gene is 15897211

Identifier: 15897211

GI number: 15897211

Start: 229516

End: 229998

Strand: Reverse

Name: 15897211

Synonym: SSO0267

Alternate gene names: NA

Gene position: 229998-229516 (Counterclockwise)

Preceding gene: 15897212

Following gene: 15897210

Centisome position: 7.69

GC content: 32.09

Gene sequence:

>483_bases
GTGACTACACACGTAATCTTAGTAGCAAGAGCTTTTGGAGCTAAGGGTGTTTATATAGAAGGCAAAGATGAAAAAATGGT
GAAATCCATCTTAAAAGTTATAGATAGTTGGGGTGGTTCATCATATTTTTTAGTAAAGGAAATTGAAAATGGAAAGAGTA
TAGTAAATGAATGGAAAGAAAAAGGAGGTACAATAATACATTTGACTATGTATGGTATTAATATTAACGATTTCCAAGAT
AGATTTGAAAAAATAAAATATCCACTACTAATAATTGTAGGAGCAGAAAAAGTTGAAGGTTGGTATTACCACAATGCAGA
TTATAACATAGCAATAGGGAATCAACCACATTCTGAAGTGGCTGCACTGGCAATCTTTTTAGACAGAATTTATAAAGGAC
GAGAGCTATATATGGAATTTGAAGATGCAAAAATAAAGATATTACCTCAGAAAGCCGGTAAGAAGGTGATAAGAAGTGGT
TAA

Upstream 100 bases:

>100_bases
TTGAATTATTAAGGGATAAGATATACCAGCTAGCAACTCAGTTGAGTTAAAAGATATATACGTTTTAAGATTAGGACATA
GACCAGCTAGAGATAAAAGA

Downstream 100 bases:

>100_bases
CGCAGAGGATCTGTTTATCAATCTAGCCAAAAGTTTGTTAGGGGATGATGTAATTGATGTTCTAAGAATATTATTAGATA
AAGGAACCGAAATGACTGAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 160; Mature: 159

Protein sequence:

>160_residues
MTTHVILVARAFGAKGVYIEGKDEKMVKSILKVIDSWGGSSYFLVKEIENGKSIVNEWKEKGGTIIHLTMYGININDFQD
RFEKIKYPLLIIVGAEKVEGWYYHNADYNIAIGNQPHSEVAALAIFLDRIYKGRELYMEFEDAKIKILPQKAGKKVIRSG

Sequences:

>Translated_160_residues
MTTHVILVARAFGAKGVYIEGKDEKMVKSILKVIDSWGGSSYFLVKEIENGKSIVNEWKEKGGTIIHLTMYGININDFQD
RFEKIKYPLLIIVGAEKVEGWYYHNADYNIAIGNQPHSEVAALAIFLDRIYKGRELYMEFEDAKIKILPQKAGKKVIRSG
>Mature_159_residues
TTHVILVARAFGAKGVYIEGKDEKMVKSILKVIDSWGGSSYFLVKEIENGKSIVNEWKEKGGTIIHLTMYGININDFQDR
FEKIKYPLLIIVGAEKVEGWYYHNADYNIAIGNQPHSEVAALAIFLDRIYKGRELYMEFEDAKIKILPQKAGKKVIRSG

Specific function: Specifically catalyzes the AdoMet-dependent 2'-O-ribose methylation of cytidine at position 56 in tRNAs

COG id: COG1303

COG function: function code S; Uncharacterized protein conserved in archaea

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the aTrm56 family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): TRM56_SULSO (Q980M4)

Other databases:

- EMBL:   AE006641
- PIR:   G90168
- RefSeq:   NP_341816.1
- ProteinModelPortal:   Q980M4
- SMR:   Q980M4
- GeneID:   1455416
- GenomeReviews:   AE006641_GR
- KEGG:   sso:SSO0267
- NMPDR:   fig|273057.1.peg.239
- HOGENOM:   HBG297370
- OMA:   GHRPERD
- ProtClustDB:   CLSK802641
- BioCyc:   SSOL273057:SSO0267-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00077
- InterPro:   IPR002845
- PIRSF:   PIRSF016123
- ProDom:   PD016584

Pfam domain/function: PF01994 DUF127

EC number: NA

Molecular weight: Translated: 18185; Mature: 18054

Theoretical pI: Translated: 9.39; Mature: 9.39

Prosite motif: NA

Important sites: BINDING 68-68

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTHVILVARAFGAKGVYIEGKDEKMVKSILKVIDSWGGSSYFLVKEIENGKSIVNEWKE
CCCEEEEEEEECCCCEEEEECCCHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHH
KGGTIIHLTMYGININDFQDRFEKIKYPLLIIVGAEKVEGWYYHNADYNIAIGNQPHSEV
CCCCEEEEEEEECCCHHHHHHHHHCCCCEEEEEECCCCCCEEEECCCEEEEECCCCHHHH
AALAIFLDRIYKGRELYMEFEDAKIKILPQKAGKKVIRSG
HHHHHHHHHHHCCCEEEEEECCCEEEEEECHHCCHHHCCC
>Mature Secondary Structure 
TTHVILVARAFGAKGVYIEGKDEKMVKSILKVIDSWGGSSYFLVKEIENGKSIVNEWKE
CCEEEEEEEECCCCEEEEECCCHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHH
KGGTIIHLTMYGININDFQDRFEKIKYPLLIIVGAEKVEGWYYHNADYNIAIGNQPHSEV
CCCCEEEEEEEECCCHHHHHHHHHCCCCEEEEEECCCCCCEEEECCCEEEEECCCCHHHH
AALAIFLDRIYKGRELYMEFEDAKIKILPQKAGKKVIRSG
HHHHHHHHHHHCCCEEEEEECCCEEEEEECHHCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11427726