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The map label for this gene is tfE [H]

Identifier: 15897210

GI number: 15897210

Start: 228987

End: 229523

Strand: Reverse

Name: tfE [H]

Synonym: SSO0266

Alternate gene names: 15897210

Gene position: 229523-228987 (Counterclockwise)

Preceding gene: 15897211

Following gene: 15897209

Centisome position: 7.67

GC content: 29.8

Gene sequence:

>537_bases
GTGGTTAACGCAGAGGATCTGTTTATCAATCTAGCCAAAAGTTTGTTAGGGGATGATGTAATTGATGTTCTAAGAATATT
ATTAGATAAAGGAACCGAAATGACTGATGAAGAAATAGCGAATCAGTTGAATATAAAAGTTAATGATGTAAGGAAGAAAT
TAAATTTACTAGAGGAGCAAGGTTTTGTAAGTTATAGGAAAACAAGAGATAAAGATAGTGGTTGGTTCATTTACTACTGG
AAACCTAACATAGACCAGATTAATGAAATACTGTTAAATAGGAAAAGATTAATATTAGATAAATTAAAGACAAGATTGGA
ATATGAGAAAAATAATACGTTCTTTATATGCCCTCAAGATAATAGTAGATATTCATTTGAAGAAGCGTTTGAAAATGAAT
TTAAATGCTTGAAATGTGGATCGCAACTAACCTATTATGATACGGATAAAATTAAGTCCTTCTTAGAGCAAAAAATAAGA
CAAATAGAGGAGGAAATAGACAAGGAGACAAAACTTGGAGCTAATAAAAATCATTGA

Upstream 100 bases:

>100_bases
TTTTTAGACAGAATTTATAAAGGACGAGAGCTATATATGGAATTTGAAGATGCAAAAATAAAGATATTACCTCAGAAAGC
CGGTAAGAAGGTGATAAGAA

Downstream 100 bases:

>100_bases
TCTATTTTCTGGAGCTGGAGGATTTTCATTAGGTTTTAAAAAACTAGGAATAGAACCTAAATTAGCAATAGACATAAATC
ATGCAGCAACTAGAACATAT

Product: transcription factor E

Products: NA

Alternate protein names: TFE; TFIIE subunit alpha homolog; Transcription initiation factor TFIIE [H]

Number of amino acids: Translated: 178; Mature: 178

Protein sequence:

>178_residues
MVNAEDLFINLAKSLLGDDVIDVLRILLDKGTEMTDEEIANQLNIKVNDVRKKLNLLEEQGFVSYRKTRDKDSGWFIYYW
KPNIDQINEILLNRKRLILDKLKTRLEYEKNNTFFICPQDNSRYSFEEAFENEFKCLKCGSQLTYYDTDKIKSFLEQKIR
QIEEEIDKETKLGANKNH

Sequences:

>Translated_178_residues
MVNAEDLFINLAKSLLGDDVIDVLRILLDKGTEMTDEEIANQLNIKVNDVRKKLNLLEEQGFVSYRKTRDKDSGWFIYYW
KPNIDQINEILLNRKRLILDKLKTRLEYEKNNTFFICPQDNSRYSFEEAFENEFKCLKCGSQLTYYDTDKIKSFLEQKIR
QIEEEIDKETKLGANKNH
>Mature_178_residues
MVNAEDLFINLAKSLLGDDVIDVLRILLDKGTEMTDEEIANQLNIKVNDVRKKLNLLEEQGFVSYRKTRDKDSGWFIYYW
KPNIDQINEILLNRKRLILDKLKTRLEYEKNNTFFICPQDNSRYSFEEAFENEFKCLKCGSQLTYYDTDKIKSFLEQKIR
QIEEEIDKETKLGANKNH

Specific function: Transcription factor that plays a role in the activation of archaeal genes transcribed by RNA polymerase. Facilitates transcription initiation by enhancing TATA-box recognition by TATA-box-binding protein (tbp), and transcription factor B (tfb) and RNA po

COG id: COG1675

COG function: function code K; Transcription initiation factor IIE, alpha subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH TFE/IIEalpha-type domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016481
- InterPro:   IPR017919
- InterPro:   IPR011991 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21173; Mature: 21173

Theoretical pI: Translated: 5.02; Mature: 5.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVNAEDLFINLAKSLLGDDVIDVLRILLDKGTEMTDEEIANQLNIKVNDVRKKLNLLEEQ
CCCHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHC
GFVSYRKTRDKDSGWFIYYWKPNIDQINEILLNRKRLILDKLKTRLEYEKNNTFFICPQD
CCHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCC
NSRYSFEEAFENEFKCLKCGSQLTYYDTDKIKSFLEQKIRQIEEEIDKETKLGANKNH
CCCCCHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MVNAEDLFINLAKSLLGDDVIDVLRILLDKGTEMTDEEIANQLNIKVNDVRKKLNLLEEQ
CCCHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHC
GFVSYRKTRDKDSGWFIYYWKPNIDQINEILLNRKRLILDKLKTRLEYEKNNTFFICPQD
CCHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCC
NSRYSFEEAFENEFKCLKCGSQLTYYDTDKIKSFLEQKIRQIEEEIDKETKLGANKNH
CCCCCHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA