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The map label for this gene is snRNP-1

Identifier: 15897150

GI number: 15897150

Start: 173686

End: 173949

Strand: Reverse

Name: snRNP-1

Synonym: SSO5410

Alternate gene names: NA

Gene position: 173949-173686 (Counterclockwise)

Preceding gene: 15897152

Following gene: 15897149

Centisome position: 5.81

GC content: 33.71

Gene sequence:

>264_bases
GTGCAAGCAAAAGTAGAAAATCCGTTGAAGAGTTTAAGAACGGCAATAAATAGAATCGTGCTGGTAAAACTTAAGGATGG
CTCAGAGTACATTGGAAAATTAGAACAAACTGACGGAACTATGAATTTAGTATTAAGAGATTGTACTGAAATTAGGGAAG
GTACTTCTGAACCAGTAGCAAAATACGGTAGGGTACTTATAAGAGGTAGTAATATACTATTTATTAGTGTTGACTATGAG
ACAGTTATGAATAGTGAGAAATAA

Upstream 100 bases:

>100_bases
TAGCTTCTAATTGCTAACTCTAATAAACAATAATGCATATATTCTATCAAGTTAAAGCTTAGAAGATAAAATTTAAATTA
GAAAATAGGGGGAAGATATT

Downstream 100 bases:

>100_bases
AATTTAAATTAGTACTTGTTTGAGGAACCTATAATGAGAAATATAAATGTGCAATTAAATCCCCTTTCAGATATAGAGAA
ACTTCAAGTAGAACTAGTAG

Product: small nuclear riboprotein protein (snRNP-1)

Products: NA

Alternate protein names: Small Nucleolar RNP Protein Sm; Small Nuclear Ribonucleoprotein; SnRNP Sm-Like Protein; Small Nuclear Ribonucleoprotein LSM Family; LSM Family Small Nuclear Ribonucleoprotein; Sm-Like Protein

Number of amino acids: Translated: 87; Mature: 87

Protein sequence:

>87_residues
MQAKVENPLKSLRTAINRIVLVKLKDGSEYIGKLEQTDGTMNLVLRDCTEIREGTSEPVAKYGRVLIRGSNILFISVDYE
TVMNSEK

Sequences:

>Translated_87_residues
MQAKVENPLKSLRTAINRIVLVKLKDGSEYIGKLEQTDGTMNLVLRDCTEIREGTSEPVAKYGRVLIRGSNILFISVDYE
TVMNSEK
>Mature_87_residues
MQAKVENPLKSLRTAINRIVLVKLKDGSEYIGKLEQTDGTMNLVLRDCTEIREGTSEPVAKYGRVLIRGSNILFISVDYE
TVMNSEK

Specific function: Unknown

COG id: COG1958

COG function: function code K; Small nuclear ribonucleoprotein (snRNP) homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 9788; Mature: 9788

Theoretical pI: Translated: 8.46; Mature: 8.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQAKVENPLKSLRTAINRIVLVKLKDGSEYIGKLEQTDGTMNLVLRDCTEIREGTSEPVA
CCCCHHHHHHHHHHHHHHEEEEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHH
KYGRVLIRGSNILFISVDYETVMNSEK
HHCEEEEECCCEEEEEECHHHHCCCCC
>Mature Secondary Structure
MQAKVENPLKSLRTAINRIVLVKLKDGSEYIGKLEQTDGTMNLVLRDCTEIREGTSEPVA
CCCCHHHHHHHHHHHHHHEEEEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHH
KYGRVLIRGSNILFISVDYETVMNSEK
HHCEEEEECCCEEEEEECHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA