Click here to switch to the map view.

The map label for this gene is 15897097

Identifier: 15897097

GI number: 15897097

Start: 118421

End: 119638

Strand: Reverse

Name: 15897097

Synonym: SSO0142

Alternate gene names: NA

Gene position: 119638-118421 (Counterclockwise)

Preceding gene: 15897098

Following gene: 15897095

Centisome position: 4.0

GC content: 38.26

Gene sequence:

>1218_bases
ATGGACAAAATAGAGTGGGCTAAATGGTTTATTGACACGCTAGGTTTTGCGGTAATCCCAATTGACAGAGATACAAAAAA
GCCGACCATACCAAATTGGCAACAGTATAGCACGCGTGCTTTGACTGATGAAGAGAAAGAGAAATTTCCAAAGATGATCG
AAGAGGGGTATAACTACGGGATCCCGGGACAAATGTTAGATAAGAATCGTGCACTAGTGATTTTGGATTTTGAGGATAAG
GAACTTCTCAAAGCCTGGATAGGTGAAAGTGAGCTAAACAAATTATGCCAAAACACACTATGCGTGACCACGCCACATAA
CGGTTTACACATTTATGCGATAACAGAAGAATTCCCGGAATACAAGTTTAATCCAGCGTTTCTTAGGGAAAATAAAAACG
TAATGGATTTGCAAAGTCTAAAATCATATGTGGTAGCCCCCGGTTCTTGTATTAACCATAAGTTCTGTGATTCGGCAAAA
TGCCCGTGGAAAGGACAAGATTATGTTACATGTTATTACGCAGATATCACGCCGGAGAGAGCTAAAATAAATGAGATACA
TCTGAAAGGCTTTCTAAAGTATCTGGTAGAGAAAGGGAAGAAATTAGGAATAACACCCGCGAGTGGATTGTTAGAATGGT
TAGGCGGTAACAAGAAAAGTGATACTGAAGAAGATTTTGAGAAACTAAAGGAAGAGATGAGGAAATATGATAGATATAGA
GGAAAAACGTTAGACGCGATAAGAGATGAATTATGTAAGGCAATCAAAAAGAAGATTGAACATGCTGAAGAAAAAGCGAA
AGAAACGCTAAATATTGCTAAAGGCGTGCTTTGCGATAAAAAGACATACGCGGATATAGGAATAGATAGAAGTAGAGGGG
ATTGGCATTTACTGAACTTTTTGTTAAGCCACGGGGCAACAGATCTAGACGTAGTAATGCAATTACTACCAGAGGATAGT
AAGGTCTTTGAACCTAAATGGGATAAATATACGTTTCACACGGTGGCCAAAATATGGGAAAGAGTGAAGCCGTGGTTAAC
GGAGTTCAGAAATGGCGACAAGAAGACAGAACTTAAGCTAAGGGGGGCTTTAATAATATCTAATCTCTTAAGGAAAAAAT
ACGTAATCAGAACTTTCTATCAAGACATGGGGCAGTGGTGTTTCACCAAATTATTTCATTTGAAAGATATAATATTAGTC
CTTTCAAAAAGAGATTGA

Upstream 100 bases:

>100_bases
ATGCGGAATGTCCGCTAAGTTTTAGTGATAAGATCTACGCCGAAATTAAAGGAAACTATCACGGGGACACACCTTACACA
CTTCTTAGAAGAGTGAGAGC

Downstream 100 bases:

>100_bases
TATAGAGAAAAACAATAAAATTATTATGAAACATAACATGTTAAAATAATTTGCAAAAAATATAGCGTACAATTCTAATA
ATAAGAGGAGAATTCTGAAT

Product: primase (amino-end fragment)

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 405; Mature: 405

Protein sequence:

>405_residues
MDKIEWAKWFIDTLGFAVIPIDRDTKKPTIPNWQQYSTRALTDEEKEKFPKMIEEGYNYGIPGQMLDKNRALVILDFEDK
ELLKAWIGESELNKLCQNTLCVTTPHNGLHIYAITEEFPEYKFNPAFLRENKNVMDLQSLKSYVVAPGSCINHKFCDSAK
CPWKGQDYVTCYYADITPERAKINEIHLKGFLKYLVEKGKKLGITPASGLLEWLGGNKKSDTEEDFEKLKEEMRKYDRYR
GKTLDAIRDELCKAIKKKIEHAEEKAKETLNIAKGVLCDKKTYADIGIDRSRGDWHLLNFLLSHGATDLDVVMQLLPEDS
KVFEPKWDKYTFHTVAKIWERVKPWLTEFRNGDKKTELKLRGALIISNLLRKKYVIRTFYQDMGQWCFTKLFHLKDIILV
LSKRD

Sequences:

>Translated_405_residues
MDKIEWAKWFIDTLGFAVIPIDRDTKKPTIPNWQQYSTRALTDEEKEKFPKMIEEGYNYGIPGQMLDKNRALVILDFEDK
ELLKAWIGESELNKLCQNTLCVTTPHNGLHIYAITEEFPEYKFNPAFLRENKNVMDLQSLKSYVVAPGSCINHKFCDSAK
CPWKGQDYVTCYYADITPERAKINEIHLKGFLKYLVEKGKKLGITPASGLLEWLGGNKKSDTEEDFEKLKEEMRKYDRYR
GKTLDAIRDELCKAIKKKIEHAEEKAKETLNIAKGVLCDKKTYADIGIDRSRGDWHLLNFLLSHGATDLDVVMQLLPEDS
KVFEPKWDKYTFHTVAKIWERVKPWLTEFRNGDKKTELKLRGALIISNLLRKKYVIRTFYQDMGQWCFTKLFHLKDIILV
LSKRD
>Mature_405_residues
MDKIEWAKWFIDTLGFAVIPIDRDTKKPTIPNWQQYSTRALTDEEKEKFPKMIEEGYNYGIPGQMLDKNRALVILDFEDK
ELLKAWIGESELNKLCQNTLCVTTPHNGLHIYAITEEFPEYKFNPAFLRENKNVMDLQSLKSYVVAPGSCINHKFCDSAK
CPWKGQDYVTCYYADITPERAKINEIHLKGFLKYLVEKGKKLGITPASGLLEWLGGNKKSDTEEDFEKLKEEMRKYDRYR
GKTLDAIRDELCKAIKKKIEHAEEKAKETLNIAKGVLCDKKTYADIGIDRSRGDWHLLNFLLSHGATDLDVVMQLLPEDS
KVFEPKWDKYTFHTVAKIWERVKPWLTEFRNGDKKTELKLRGALIISNLLRKKYVIRTFYQDMGQWCFTKLFHLKDIILV
LSKRD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 47312; Mature: 47312

Theoretical pI: Translated: 8.57; Mature: 8.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKIEWAKWFIDTLGFAVIPIDRDTKKPTIPNWQQYSTRALTDEEKEKFPKMIEEGYNYG
CCCHHHHHHHHHHCCCEEEECCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCC
IPGQMLDKNRALVILDFEDKELLKAWIGESELNKLCQNTLCVTTPHNGLHIYAITEEFPE
CCCHHCCCCCEEEEEECCCHHHHHHHCCHHHHHHHHHCCEEEECCCCCEEEEEECCCCCC
YKFNPAFLRENKNVMDLQSLKSYVVAPGSCINHKFCDSAKCPWKGQDYVTCYYADITPER
CCCCHHHHHCCCCHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCCCCCEEEEEEECCCCCH
AKINEIHLKGFLKYLVEKGKKLGITPASGLLEWLGGNKKSDTEEDFEKLKEEMRKYDRYR
HHHHHHHHHHHHHHHHHCCCEECCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHC
GKTLDAIRDELCKAIKKKIEHAEEKAKETLNIAKGVLCDKKTYADIGIDRSRGDWHLLNF
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCHHHHHHH
LLSHGATDLDVVMQLLPEDSKVFEPKWDKYTFHTVAKIWERVKPWLTEFRNGDKKTELKL
HHHCCCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
RGALIISNLLRKKYVIRTFYQDMGQWCFTKLFHLKDIILVLSKRD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MDKIEWAKWFIDTLGFAVIPIDRDTKKPTIPNWQQYSTRALTDEEKEKFPKMIEEGYNYG
CCCHHHHHHHHHHCCCEEEECCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCC
IPGQMLDKNRALVILDFEDKELLKAWIGESELNKLCQNTLCVTTPHNGLHIYAITEEFPE
CCCHHCCCCCEEEEEECCCHHHHHHHCCHHHHHHHHHCCEEEECCCCCEEEEEECCCCCC
YKFNPAFLRENKNVMDLQSLKSYVVAPGSCINHKFCDSAKCPWKGQDYVTCYYADITPER
CCCCHHHHHCCCCHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCCCCCEEEEEEECCCCCH
AKINEIHLKGFLKYLVEKGKKLGITPASGLLEWLGGNKKSDTEEDFEKLKEEMRKYDRYR
HHHHHHHHHHHHHHHHHCCCEECCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHC
GKTLDAIRDELCKAIKKKIEHAEEKAKETLNIAKGVLCDKKTYADIGIDRSRGDWHLLNF
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCHHHHHHH
LLSHGATDLDVVMQLLPEDSKVFEPKWDKYTFHTVAKIWERVKPWLTEFRNGDKKTELKL
HHHCCCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
RGALIISNLLRKKYVIRTFYQDMGQWCFTKLFHLKDIILVLSKRD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA