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The map label for this gene is rpl7ae [H]

Identifier: 15897054

GI number: 15897054

Start: 73708

End: 74100

Strand: Reverse

Name: rpl7ae [H]

Synonym: SSO0091

Alternate gene names: 15897054

Gene position: 74100-73708 (Counterclockwise)

Preceding gene: 15897055

Following gene: 15897053

Centisome position: 2.48

GC content: 37.15

Gene sequence:

>393_bases
ATGAACGCGATGTCAAAAGCTAGTTATGTTAAGTTTGAAGTACCACAAGACCTAGCAGATAAAGTATTAGAAGCAGTAAG
AAAAGCTAAGGAAAGCGGAAAGATAAAGAAGGGTACCAATGAGACAACAAAGGCTGTAGAAAGGGGTCAAGCTAAATTAG
TAATTATTGCTGAAGATGTACAACCAGAGGAAATAGTTGCACACCTACCACTGTTATGCGATGAGAAAAAAATACCATAT
GTTTATGTTTCCTCTAAAAAAGCCTTAGGAGAAGCTTGTGGTTTACAAGTAGCCACAGCATCTGCAGCTATCTTAGAGCC
TGGCGAAGCTAAGGATCTAGTTGATGAAATAATTAAGAGAGTAAACGAGATTAAAGGTAAAACTTCAAGTTAA

Upstream 100 bases:

>100_bases
TTATCTTCACCTTAAGGTGCTAAGCTTTCTGTCTTATCCTATAGTAAACTTTATTTTTTGCTAATACTTCTAAAGACTTG
CGTGACGAAACTAGAGGAGG

Downstream 100 bases:

>100_bases
TTTAAACATAATTTAACGCCATAGAGATAAAGGTAGAAGTCTTAAGGCGAAGGTCAAGTTTTTTAAAGTTCTATTTTTCA
TAATTTTTCATATAAGTCTT

Product: 50S ribosomal protein L7Ae

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 130; Mature: 130

Protein sequence:

>130_residues
MNAMSKASYVKFEVPQDLADKVLEAVRKAKESGKIKKGTNETTKAVERGQAKLVIIAEDVQPEEIVAHLPLLCDEKKIPY
VYVSSKKALGEACGLQVATASAAILEPGEAKDLVDEIIKRVNEIKGKTSS

Sequences:

>Translated_130_residues
MNAMSKASYVKFEVPQDLADKVLEAVRKAKESGKIKKGTNETTKAVERGQAKLVIIAEDVQPEEIVAHLPLLCDEKKIPY
VYVSSKKALGEACGLQVATASAAILEPGEAKDLVDEIIKRVNEIKGKTSS
>Mature_130_residues
MNAMSKASYVKFEVPQDLADKVLEAVRKAKESGKIKKGTNETTKAVERGQAKLVIIAEDVQPEEIVAHLPLLCDEKKIPY
VYVSSKKALGEACGLQVATASAAILEPGEAKDLVDEIIKRVNEIKGKTSS

Specific function: Multifunctional RNA-binding protein that recognizes the K-turn motif in ribosomal RNA, box H/ACA, box C/D and box C'/D' sRNAs [H]

COG id: COG1358

COG function: function code J; Ribosomal protein HS6-type (S12/L30/L7a)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L7Ae family [H]

Homologues:

Organism=Homo sapiens, GI4826860, Length=78, Percent_Identity=46.1538461538462, Blast_Score=88, Evalue=2e-18,
Organism=Homo sapiens, GI51317376, Length=78, Percent_Identity=46.1538461538462, Blast_Score=88, Evalue=2e-18,
Organism=Homo sapiens, GI8923444, Length=107, Percent_Identity=30.8411214953271, Blast_Score=71, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17535189, Length=90, Percent_Identity=43.3333333333333, Blast_Score=73, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI17555988, Length=101, Percent_Identity=33.6633663366337, Blast_Score=67, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI32565833, Length=100, Percent_Identity=34, Blast_Score=65, Evalue=7e-12,
Organism=Caenorhabditis elegans, GI32565827, Length=94, Percent_Identity=35.1063829787234, Blast_Score=65, Evalue=1e-11,
Organism=Saccharomyces cerevisiae, GI6320809, Length=87, Percent_Identity=44.8275862068966, Blast_Score=90, Evalue=9e-20,
Organism=Saccharomyces cerevisiae, GI6319993, Length=116, Percent_Identity=33.6206896551724, Blast_Score=78, Evalue=4e-16,
Organism=Drosophila melanogaster, GI17864298, Length=78, Percent_Identity=47.4358974358974, Blast_Score=89, Evalue=5e-19,
Organism=Drosophila melanogaster, GI21356151, Length=101, Percent_Identity=36.6336633663366, Blast_Score=70, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004038
- InterPro:   IPR018492
- InterPro:   IPR022481
- InterPro:   IPR004037
- InterPro:   IPR000948 [H]

Pfam domain/function: PF01248 Ribosomal_L7Ae [H]

EC number: NA

Molecular weight: Translated: 14052; Mature: 14052

Theoretical pI: Translated: 8.19; Mature: 8.19

Prosite motif: PS01082 RIBOSOMAL_L7AE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNAMSKASYVKFEVPQDLADKVLEAVRKAKESGKIKKGTNETTKAVERGQAKLVIIAEDV
CCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCEEEEEECCC
QPEEIVAHLPLLCDEKKIPYVYVSSKKALGEACGLQVATASAAILEPGEAKDLVDEIIKR
CHHHHHHHCCCCCCCCCCCEEEECCCHHHHHHHCCCHHCCCHHHCCCCCHHHHHHHHHHH
VNEIKGKTSS
HHHHCCCCCC
>Mature Secondary Structure
MNAMSKASYVKFEVPQDLADKVLEAVRKAKESGKIKKGTNETTKAVERGQAKLVIIAEDV
CCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCEEEEEECCC
QPEEIVAHLPLLCDEKKIPYVYVSSKKALGEACGLQVATASAAILEPGEAKDLVDEIIKR
CHHHHHHHCCCCCCCCCCCEEEECCCHHHHHHHCCCHHCCCHHHCCCCCHHHHHHHHHHH
VNEIKGKTSS
HHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA