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The map label for this gene is fni [H]

Identifier: 15897029

GI number: 15897029

Start: 52207

End: 53313

Strand: Reverse

Name: fni [H]

Synonym: SSO0063

Alternate gene names: 15897029

Gene position: 53313-52207 (Counterclockwise)

Preceding gene: 15897030

Following gene: 15897028

Centisome position: 1.78

GC content: 38.48

Gene sequence:

>1107_bases
ATGCCTGATATAGTAAATAGGAAAGTTGAACATGTAGAAATTGCAGCTTTTGAAAACGTTGACGGTCTATCTTCGTCAAC
GTTCTTAAATGATGTAATTTTAGTTCATCAAGGATTTCCCGGTATATCGTTCAGTGAGATAAATACCAAGACAAAGTTTT
TTAGAAAAGAGATAAGTGCGCCAATAATGGTAACTGGGATGACGGGTGGAAGGAACGAACTAGGAAGAATAAATAGGATT
ATAGCAGAGGTTGCTGAGAAATTCGGAATACCCATGGGGGTAGGCAGTCAAAGAGTTGCAATAGAAAAGGCAGAGGCTAG
GGAAAGTTTTACAATAGTCAGAAAAGTTGCTCCTACGATACCTATTATTGCTAACTTGGGGATGCCACAATTAGTTAAGG
GATATGGATTAAAGGAATTTCAAGATGCTATACAAATGATAGAGGCTGATGCAATAGCCGTTCACTTGAATCCAGCTCAA
GAAGTATTTCAACCAGAAGGCGAACCAGAGTATCAGATTTATGCTTTAGAGAGACTGAGGGATATATCTAAGGAGCTATC
TGTACCAATTATAGTAAAAGAAAGTGGAAATGGTATTTCCATGGAAACTGCAAAGCTTCTTTATAGTTATGGTATAAAGA
ATTTTGATACTTCTGGGCAAGGCGGTACTAATTGGATAGCGATAGAGATGATAAGGGATATTAGAAGGGGAAATTGGAAG
GCAGAAAGCGCAAAAAACTTCCTTGACTGGGGTGTGCCGACGGCGGCTTCGATAATTGAGGTAAGATATTCAATTCCTGA
TGCTTTCCTAGTGGGTAGTGGTGGTATTAGGAGTGGGTTAGATGCAGCTAAGGCTATAGCGCTAGGGGCTGATATTGCTG
GTATGGCTTTACCGGTACTTAAAAGTGCAATAGAAGGTAAAGAAAGTTTAGAACAGTTCTTTAGGAAGATAATATTTGAA
TTGAAGGCAACCATGATGCTTACTGGTTCTAAAAACGTTGAGGCACTAAAGAGGAGTAGTATTGTAATTTTGGGTAAACT
TAAAGAGTGGGCTGAATATAGGGGGATAAATTTATCTATATACGAGAAAGTTAGAAAGAGAGAATAA

Upstream 100 bases:

>100_bases
AACAATTTAAACGCTTTGATTTTTGATGGTAGCAAAACTGGAAATATATATTTAGCATTAAGGGGATATAATATAGGTAC
TTTAGTAAGAGGTAATCCGA

Downstream 100 bases:

>100_bases
AATGAGTAGTGATGATCTAAGTTTATATTTTAACGAGATAGTTAACAATGTAAATTTTCGGATAAAAAATTTTGTAAAGA
GCAATTTTAAGACGCTTGAG

Product: isopentenyl pyrophosphate isomerase

Products: NA

Alternate protein names: IPP isomerase; Isopentenyl pyrophosphate isomerase [H]

Number of amino acids: Translated: 368; Mature: 367

Protein sequence:

>368_residues
MPDIVNRKVEHVEIAAFENVDGLSSSTFLNDVILVHQGFPGISFSEINTKTKFFRKEISAPIMVTGMTGGRNELGRINRI
IAEVAEKFGIPMGVGSQRVAIEKAEARESFTIVRKVAPTIPIIANLGMPQLVKGYGLKEFQDAIQMIEADAIAVHLNPAQ
EVFQPEGEPEYQIYALERLRDISKELSVPIIVKESGNGISMETAKLLYSYGIKNFDTSGQGGTNWIAIEMIRDIRRGNWK
AESAKNFLDWGVPTAASIIEVRYSIPDAFLVGSGGIRSGLDAAKAIALGADIAGMALPVLKSAIEGKESLEQFFRKIIFE
LKATMMLTGSKNVEALKRSSIVILGKLKEWAEYRGINLSIYEKVRKRE

Sequences:

>Translated_368_residues
MPDIVNRKVEHVEIAAFENVDGLSSSTFLNDVILVHQGFPGISFSEINTKTKFFRKEISAPIMVTGMTGGRNELGRINRI
IAEVAEKFGIPMGVGSQRVAIEKAEARESFTIVRKVAPTIPIIANLGMPQLVKGYGLKEFQDAIQMIEADAIAVHLNPAQ
EVFQPEGEPEYQIYALERLRDISKELSVPIIVKESGNGISMETAKLLYSYGIKNFDTSGQGGTNWIAIEMIRDIRRGNWK
AESAKNFLDWGVPTAASIIEVRYSIPDAFLVGSGGIRSGLDAAKAIALGADIAGMALPVLKSAIEGKESLEQFFRKIIFE
LKATMMLTGSKNVEALKRSSIVILGKLKEWAEYRGINLSIYEKVRKRE
>Mature_367_residues
PDIVNRKVEHVEIAAFENVDGLSSSTFLNDVILVHQGFPGISFSEINTKTKFFRKEISAPIMVTGMTGGRNELGRINRII
AEVAEKFGIPMGVGSQRVAIEKAEARESFTIVRKVAPTIPIIANLGMPQLVKGYGLKEFQDAIQMIEADAIAVHLNPAQE
VFQPEGEPEYQIYALERLRDISKELSVPIIVKESGNGISMETAKLLYSYGIKNFDTSGQGGTNWIAIEMIRDIRRGNWKA
ESAKNFLDWGVPTAASIIEVRYSIPDAFLVGSGGIRSGLDAAKAIALGADIAGMALPVLKSAIEGKESLEQFFRKIIFEL
KATMMLTGSKNVEALKRSSIVILGKLKEWAEYRGINLSIYEKVRKRE

Specific function: Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP) [H]

COG id: COG1304

COG function: function code C; L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the IPP isomerase type 2 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR000262
- InterPro:   IPR011179 [H]

Pfam domain/function: PF01070 FMN_dh [H]

EC number: =5.3.3.2 [H]

Molecular weight: Translated: 40537; Mature: 40405

Theoretical pI: Translated: 8.67; Mature: 8.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPDIVNRKVEHVEIAAFENVDGLSSSTFLNDVILVHQGFPGISFSEINTKTKFFRKEISA
CCCHHCCCHHEEEEEEECCCCCCCCHHHHHHEEEEECCCCCCCHHHHHHHHHHHHHHCCC
PIMVTGMTGGRNELGRINRIIAEVAEKFGIPMGVGSQRVAIEKAEARESFTIVRKVAPTI
CEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEHHHHHHHHHHHHHHCCCC
PIIANLGMPQLVKGYGLKEFQDAIQMIEADAIAVHLNPAQEVFQPEGEPEYQIYALERLR
CHHHCCCCHHHHHCCCHHHHHHHHHHHHCCEEEEEECCHHHHHCCCCCCCEEEHHHHHHH
DISKELSVPIIVKESGNGISMETAKLLYSYGIKNFDTSGQGGTNWIAIEMIRDIRRGNWK
HHHHHCCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCC
AESAKNFLDWGVPTAASIIEVRYSIPDAFLVGSGGIRSGLDAAKAIALGADIAGMALPVL
CHHHHHHHHCCCCHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHCCCHHHHHHHHH
KSAIEGKESLEQFFRKIIFELKATMMLTGSKNVEALKRSSIVILGKLKEWAEYRGINLSI
HHHHCCHHHHHHHHHHHHHHHHHHEEEECCCCHHHHHHCCEEEEECHHHHHHHCCCCHHH
YEKVRKRE
HHHHHHCC
>Mature Secondary Structure 
PDIVNRKVEHVEIAAFENVDGLSSSTFLNDVILVHQGFPGISFSEINTKTKFFRKEISA
CCHHCCCHHEEEEEEECCCCCCCCHHHHHHEEEEECCCCCCCHHHHHHHHHHHHHHCCC
PIMVTGMTGGRNELGRINRIIAEVAEKFGIPMGVGSQRVAIEKAEARESFTIVRKVAPTI
CEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEHHHHHHHHHHHHHHCCCC
PIIANLGMPQLVKGYGLKEFQDAIQMIEADAIAVHLNPAQEVFQPEGEPEYQIYALERLR
CHHHCCCCHHHHHCCCHHHHHHHHHHHHCCEEEEEECCHHHHHCCCCCCCEEEHHHHHHH
DISKELSVPIIVKESGNGISMETAKLLYSYGIKNFDTSGQGGTNWIAIEMIRDIRRGNWK
HHHHHCCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCC
AESAKNFLDWGVPTAASIIEVRYSIPDAFLVGSGGIRSGLDAAKAIALGADIAGMALPVL
CHHHHHHHHCCCCHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHCCCHHHHHHHHH
KSAIEGKESLEQFFRKIIFELKATMMLTGSKNVEALKRSSIVILGKLKEWAEYRGINLSI
HHHHCCHHHHHHHHHHHHHHHHHHEEEECCCCHHHHHHCCEEEEECHHHHHHHCCCCHHH
YEKVRKRE
HHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA