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The map label for this gene is 15893205

Identifier: 15893205

GI number: 15893205

Start: 1189761

End: 1190444

Strand: Reverse

Name: 15893205

Synonym: RC1282

Alternate gene names: NA

Gene position: 1190444-1189761 (Counterclockwise)

Preceding gene: 15893206

Following gene: 15893204

Centisome position: 93.83

GC content: 35.09

Gene sequence:

>684_bases
GTGCTAATCATGAAAAAGTTACTTTTAATAGCTGCTACAAGTGCAACAATGTTGTCTTCTAGCGTATCATTTGCTGAGGG
CATGGATCATGAGTGGTATTTAAGAATAGATACCGGTGCAGCAATGTTTAATGAAGAAAAAGATAAGGCAACCGGTGTTA
AATTAAAATCTAATACAACTGTTCCAGTTGCTTTAGGTATCGGTTATTATATTTCCGAAAACTTTAGAGCCGATTTAACT
TTAGGTACTATAATCGGTGGTAAGTTAAAGAAATCCGGAGCTGCGACTAATGCACCTTTTACCCGTACTAATATTTCAGC
AAGCCATAAACCTACTATTACACGTTTACTCATTAACGGTTATGTAGATTTAACTAATTTTGATATGTTCGATGTTTTTG
CTGGTGCCGGTGTTGGTTCTGCATTAGTTAAAGAAAAAATTACATATAATGGGATAACCGGTCTTTCATCTAACACTAAA
AACAGAACTAATATTTCTTACAAGCTAACTTTAGGTACTTCTGCACAAATTGCCGACGGTGTTAAAGTAGAACTAGCTTA
TAGCTGGATAGATGATGGTAGAACCAAAAGTAAGAATGTAATTTACCAAGGAACAAGTGTACCAACCGGTGGTATGCATT
ATCAAAGCCATAACTTAACAGCCGGTATAAGATTTGATATATAA

Upstream 100 bases:

>100_bases
AAGCTTTATTATATGAATCTAATTGCCGATTAAATATAGAATTAAAAAATATAATATGTTATATATGCCATTAAAATAAT
GTTTAATTATTTAATTTGAG

Downstream 100 bases:

>100_bases
TTAACAAGAATATATTAATAGTTTTAGGTAATAACCTAATATCATACCGTGGCTTAACCACGGTATCTAGAAATACAAAA
AAAAAAGACTGGATTCCGGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 227; Mature: 227

Protein sequence:

>227_residues
MLIMKKLLLIAATSATMLSSSVSFAEGMDHEWYLRIDTGAAMFNEEKDKATGVKLKSNTTVPVALGIGYYISENFRADLT
LGTIIGGKLKKSGAATNAPFTRTNISASHKPTITRLLINGYVDLTNFDMFDVFAGAGVGSALVKEKITYNGITGLSSNTK
NRTNISYKLTLGTSAQIADGVKVELAYSWIDDGRTKSKNVIYQGTSVPTGGMHYQSHNLTAGIRFDI

Sequences:

>Translated_227_residues
MLIMKKLLLIAATSATMLSSSVSFAEGMDHEWYLRIDTGAAMFNEEKDKATGVKLKSNTTVPVALGIGYYISENFRADLT
LGTIIGGKLKKSGAATNAPFTRTNISASHKPTITRLLINGYVDLTNFDMFDVFAGAGVGSALVKEKITYNGITGLSSNTK
NRTNISYKLTLGTSAQIADGVKVELAYSWIDDGRTKSKNVIYQGTSVPTGGMHYQSHNLTAGIRFDI
>Mature_227_residues
MLIMKKLLLIAATSATMLSSSVSFAEGMDHEWYLRIDTGAAMFNEEKDKATGVKLKSNTTVPVALGIGYYISENFRADLT
LGTIIGGKLKKSGAATNAPFTRTNISASHKPTITRLLINGYVDLTNFDMFDVFAGAGVGSALVKEKITYNGITGLSSNTK
NRTNISYKLTLGTSAQIADGVKVELAYSWIDDGRTKSKNVIYQGTSVPTGGMHYQSHNLTAGIRFDI

Specific function: Unknown

COG id: COG3637

COG function: function code M; Opacity protein and related surface antigens

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To R.conorii RC1281

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1282_RICCN (Q92G42)

Other databases:

- EMBL:   AE006914
- PIR:   B97860
- RefSeq:   NP_360919.1
- ProteinModelPortal:   Q92G42
- GeneID:   928435
- GenomeReviews:   AE006914_GR
- KEGG:   rco:RC1282
- NMPDR:   fig|272944.1.peg.1282
- OMA:   ELAYSWI
- ProtClustDB:   CLSK871099
- BioCyc:   RCON272944:RC1282-MONOMER
- InterPro:   IPR011250
- InterPro:   IPR000498
- Gene3D:   G3DSA:2.40.160.20

Pfam domain/function: PF01389 OmpA_membrane

EC number: NA

Molecular weight: Translated: 24449; Mature: 24449

Theoretical pI: Translated: 9.86; Mature: 9.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLIMKKLLLIAATSATMLSSSVSFAEGMDHEWYLRIDTGAAMFNEEKDKATGVKLKSNTT
CHHHHEEHHHHCCHHHHHHCCCHHHHCCCCEEEEEEECCCCCCCCCCCCCCCEEEECCCE
VPVALGIGYYISENFRADLTLGTIIGGKLKKSGAATNAPFTRTNISASHKPTITRLLING
EEEEEECEEEECCCCEEEEEEEEEECCCCCCCCCCCCCCEEECCCCCCCCCCEEEEEEEC
YVDLTNFDMFDVFAGAGVGSALVKEKITYNGITGLSSNTKNRTNISYKLTLGTSAQIADG
EEEECCCCHHHHHHCCCCCHHHHHHHHEECCEECCCCCCCCCCEEEEEEEECCCCCCCCC
VKVELAYSWIDDGRTKSKNVIYQGTSVPTGGMHYQSHNLTAGIRFDI
EEEEEEEEECCCCCCCCCCEEEECCCCCCCCEEEECCCCEEEEEECC
>Mature Secondary Structure
MLIMKKLLLIAATSATMLSSSVSFAEGMDHEWYLRIDTGAAMFNEEKDKATGVKLKSNTT
CHHHHEEHHHHCCHHHHHHCCCHHHHCCCCEEEEEEECCCCCCCCCCCCCCCEEEECCCE
VPVALGIGYYISENFRADLTLGTIIGGKLKKSGAATNAPFTRTNISASHKPTITRLLING
EEEEEECEEEECCCCEEEEEEEEEECCCCCCCCCCCCCCEEECCCCCCCCCCEEEEEEEC
YVDLTNFDMFDVFAGAGVGSALVKEKITYNGITGLSSNTKNRTNISYKLTLGTSAQIADG
EEEECCCCHHHHHHCCCCCHHHHHHHHEECCEECCCCCCCCCCEEEEEEEECCCCCCCCC
VKVELAYSWIDDGRTKSKNVIYQGTSVPTGGMHYQSHNLTAGIRFDI
EEEEEEEEECCCCCCCCCCEEEECCCCCCCCEEEECCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11557893