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The map label for this gene is 15893204

Identifier: 15893204

GI number: 15893204

Start: 1188765

End: 1189514

Strand: Reverse

Name: 15893204

Synonym: RC1281

Alternate gene names: NA

Gene position: 1189514-1188765 (Counterclockwise)

Preceding gene: 15893205

Following gene: 15893198

Centisome position: 93.75

GC content: 32.27

Gene sequence:

>750_bases
ATGAAAAAATTACTTTTAATAGCAGCTGCAAGCACAGCACTTTTAACTTCTGGTCTTTCATTTGCTGATTGTGATATGAA
TTCTTCTGTAGATTCATCTACTAATTCATCGATGTCATCATCTGTGGAAAATCAATGGTATTTAAAACTTAATGCCGGCG
GTGTGATTTTTAACAAAACAAAACCTAAAGGAGCAGATTTTAAGTTAAATAATATAAAGTCTAATATAAAGTCTAATACA
GGGTTTACAGGTGAGATCGGTGCGGGTTACTATATCATGGATAATCTAAGAACCGATTTAACAATTGGAACGGTAGCAAG
TAGTCATTTAAAGAAATCAAAAACTTATCCAGACGGTAATTCTTTCTCAGTAAAAAATAAACCTACTATTGTAAGTGTAT
TACTTAACGGTTATGTTGATTTCGTCGATTTAAGCATGTTTAAAGTATTTGCAGGTGCAGGTGTTGGTGCTGCTTTTGTA
AAGGAAAAAATTCACTCTAAAGATATTAAAGGTGGTGTAACTGACACTTTCAACGGTACTACTAAAAACAAAACTAACTT
TGCTTATCAATTATCTTTAGGAACTTCATTTGAAGTTGCACAAGGTGTAAAAGCTGAACTAGTTTATAGCTGGAGAGATT
ACGGTAAAACAAAAAATACCACCAAAACTATTAACGGGGATAAAGTTAAATTTGGTGGAACCCATTATAAAGGTCATAAC
TTAATGGCAGGATTAAGATTTGATATGTAA

Upstream 100 bases:

>100_bases
TAAAGCTATTTTTTATCGAATTTAGGTAAAAATTGTAAAATTATTATCTAATATCGTTTTTACTAACAACTAATAAAATT
TAAAGGAAAAATTTAACAAT

Downstream 100 bases:

>100_bases
TTAGTCTTAAATCTTTTTACAAGCTATTAACACGAAAAAGGAGTCTTTAATAAAGACTCCTTTTTTTGTTTGTATGTCTT
GGTATTGCCTACGTGGATAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 249; Mature: 249

Protein sequence:

>249_residues
MKKLLLIAAASTALLTSGLSFADCDMNSSVDSSTNSSMSSSVENQWYLKLNAGGVIFNKTKPKGADFKLNNIKSNIKSNT
GFTGEIGAGYYIMDNLRTDLTIGTVASSHLKKSKTYPDGNSFSVKNKPTIVSVLLNGYVDFVDLSMFKVFAGAGVGAAFV
KEKIHSKDIKGGVTDTFNGTTKNKTNFAYQLSLGTSFEVAQGVKAELVYSWRDYGKTKNTTKTINGDKVKFGGTHYKGHN
LMAGLRFDM

Sequences:

>Translated_249_residues
MKKLLLIAAASTALLTSGLSFADCDMNSSVDSSTNSSMSSSVENQWYLKLNAGGVIFNKTKPKGADFKLNNIKSNIKSNT
GFTGEIGAGYYIMDNLRTDLTIGTVASSHLKKSKTYPDGNSFSVKNKPTIVSVLLNGYVDFVDLSMFKVFAGAGVGAAFV
KEKIHSKDIKGGVTDTFNGTTKNKTNFAYQLSLGTSFEVAQGVKAELVYSWRDYGKTKNTTKTINGDKVKFGGTHYKGHN
LMAGLRFDM
>Mature_249_residues
MKKLLLIAAASTALLTSGLSFADCDMNSSVDSSTNSSMSSSVENQWYLKLNAGGVIFNKTKPKGADFKLNNIKSNIKSNT
GFTGEIGAGYYIMDNLRTDLTIGTVASSHLKKSKTYPDGNSFSVKNKPTIVSVLLNGYVDFVDLSMFKVFAGAGVGAAFV
KEKIHSKDIKGGVTDTFNGTTKNKTNFAYQLSLGTSFEVAQGVKAELVYSWRDYGKTKNTTKTINGDKVKFGGTHYKGHN
LMAGLRFDM

Specific function: Adheres to biotinylated epithelial (Vero cell) proteins

COG id: COG3637

COG function: function code M; Opacity protein and related surface antigens

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1281_RICCN (Q92G43)

Other databases:

- EMBL:   AE006914
- PIR:   A97860
- RefSeq:   NP_360918.1
- ProteinModelPortal:   Q92G43
- GeneID:   928434
- GenomeReviews:   AE006914_GR
- KEGG:   rco:RC1281
- NMPDR:   fig|272944.1.peg.1281
- OMA:   KHKPTIV
- ProtClustDB:   CLSK871099
- BioCyc:   RCON272944:RC1281-MONOMER
- InterPro:   IPR011250
- Gene3D:   G3DSA:2.40.160.20

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 26877; Mature: 26877

Theoretical pI: Translated: 10.16; Mature: 10.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKLLLIAAASTALLTSGLSFADCDMNSSVDSSTNSSMSSSVENQWYLKLNAGGVIFNKT
CCEEEEEEECHHHHHHCCCCEEECCCCCCCCCCCCCHHHHCCCCEEEEEEECCEEEEECC
KPKGADFKLNNIKSNIKSNTGFTGEIGAGYYIMDNLRTDLTIGTVASSHLKKSKTYPDGN
CCCCCCEEEHHHHHHHCCCCCCCEECCCCEEEECCCCCCEEEEHHHHHHHHHCCCCCCCC
SFSVKNKPTIVSVLLNGYVDFVDLSMFKVFAGAGVGAAFVKEKIHSKDIKGGVTDTFNGT
CEEECCCCCEEEEEHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCC
TKNKTNFAYQLSLGTSFEVAQGVKAELVYSWRDYGKTKNTTKTINGDKVKFGGTHYKGHN
CCCCCCEEEEEECCCCHHHHCCCEEEEEEEHHHCCCCCCCEEECCCCEEEECCEEECCCC
LMAGLRFDM
EEEEEEECC
>Mature Secondary Structure
MKKLLLIAAASTALLTSGLSFADCDMNSSVDSSTNSSMSSSVENQWYLKLNAGGVIFNKT
CCEEEEEEECHHHHHHCCCCEEECCCCCCCCCCCCCHHHHCCCCEEEEEEECCEEEEECC
KPKGADFKLNNIKSNIKSNTGFTGEIGAGYYIMDNLRTDLTIGTVASSHLKKSKTYPDGN
CCCCCCEEEHHHHHHHCCCCCCCEECCCCEEEECCCCCCEEEEHHHHHHHHHCCCCCCCC
SFSVKNKPTIVSVLLNGYVDFVDLSMFKVFAGAGVGAAFVKEKIHSKDIKGGVTDTFNGT
CEEECCCCCEEEEEHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCC
TKNKTNFAYQLSLGTSFEVAQGVKAELVYSWRDYGKTKNTTKTINGDKVKFGGTHYKGHN
CCCCCCEEEEEECCCCHHHHCCCEEEEEEEHHHCCCCCCCEEECCCCEEEECCEEECCCC
LMAGLRFDM
EEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11557893