Click here to switch to the map view.

The map label for this gene is xerC [H]

Identifier: 15893191

GI number: 15893191

Start: 1169138

End: 1170055

Strand: Reverse

Name: xerC [H]

Synonym: RC1268

Alternate gene names: 15893191

Gene position: 1170055-1169138 (Counterclockwise)

Preceding gene: 15893193

Following gene: 15893190

Centisome position: 92.22

GC content: 29.74

Gene sequence:

>918_bases
ATGTTAGATACATCAATTCAAGCATTAATAAATAAGTGGCAAAAATACCTCGCTTTGCAAAGAAATTACTCTAATCATAC
AGTAATTTCTTATAATAATGACCTTAAGCATTTTCTTGAGTTTATGAATTATTATAATTCAGAGCTTGTAACGATAAATC
ATATTAAAACCGCAGATATCAGATTAATCCGAAGTTGGCTTGCAAAACGTAACTGTGATAATTTTACCGCTTCTTCAATT
TCACGTGGTTTATCTGCAGTAAAAAATTTTTATAGGTTTTTAGAGAAAACAACACAATTAAATAGTCATATAATTTTTTC
TATAAAATCTCCTAAAAAGACTAAATTGTTACCAAAAGCTTTATCGGAAGATGATGTAGTAATATCACTTGAACATATTG
AAGAATACGGGAATGTTAAGTGGGTAGAACTTAGAAATAAAGCCCTACTTGTCCTTATATATGCTTCAGGTCTACGTATA
TCGGAAGCATTATCAATTACGAAACTTCATCTACAAAATCTAGAATTTATAAGAATAATAGGTAAAGGTAGTAAAGAAAG
AATAATTCCGTGGTTACCGATTGCTAAAAATTTAATTACCCAATATTTAGAAATATTGCCGTATAAGTTAGGTGATAATG
AACCCATATTTAGAGGAAAGCAGGGTAAGAAATTGCAACCACCGGTATTTAATCGTGAATTAATTAAATTAAAGCATTTT
TATGGTTTACCGCAGCATTTAACTGCTCATTCATTTAGACATAGTTTTGCTTCACATTTGCTTGAGCATGGTGCAGATTT
ACGCTCTCTTCAAGAACTATTAGGTCATAAAAGTCTATCTACTACACAAAACTATACTAAAACAAGTATAAAGCATTTAG
AAGCTGTATATACTACCGCATATCCAATTAAAAAATAA

Upstream 100 bases:

>100_bases
ATATGTAAACATAAACCCTCAATTCATGCTCACATTTATAAAATTATGAGTCAATAATTGTTAGCATTAAGAATAATTAA
AAATAGTTAAGTTTTTATAA

Downstream 100 bases:

>100_bases
AATATATTAATATTCATAATCTTCTTGCATTAATTTTAAGTTATATATTATTTTAAAAACCTTATAAACATAATATATTA
AAGTTAATTGAGATATTAAT

Product: site-specific tyrosine recombinase XerC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 305; Mature: 305

Protein sequence:

>305_residues
MLDTSIQALINKWQKYLALQRNYSNHTVISYNNDLKHFLEFMNYYNSELVTINHIKTADIRLIRSWLAKRNCDNFTASSI
SRGLSAVKNFYRFLEKTTQLNSHIIFSIKSPKKTKLLPKALSEDDVVISLEHIEEYGNVKWVELRNKALLVLIYASGLRI
SEALSITKLHLQNLEFIRIIGKGSKERIIPWLPIAKNLITQYLEILPYKLGDNEPIFRGKQGKKLQPPVFNRELIKLKHF
YGLPQHLTAHSFRHSFASHLLEHGADLRSLQELLGHKSLSTTQNYTKTSIKHLEAVYTTAYPIKK

Sequences:

>Translated_305_residues
MLDTSIQALINKWQKYLALQRNYSNHTVISYNNDLKHFLEFMNYYNSELVTINHIKTADIRLIRSWLAKRNCDNFTASSI
SRGLSAVKNFYRFLEKTTQLNSHIIFSIKSPKKTKLLPKALSEDDVVISLEHIEEYGNVKWVELRNKALLVLIYASGLRI
SEALSITKLHLQNLEFIRIIGKGSKERIIPWLPIAKNLITQYLEILPYKLGDNEPIFRGKQGKKLQPPVFNRELIKLKHF
YGLPQHLTAHSFRHSFASHLLEHGADLRSLQELLGHKSLSTTQNYTKTSIKHLEAVYTTAYPIKK
>Mature_305_residues
MLDTSIQALINKWQKYLALQRNYSNHTVISYNNDLKHFLEFMNYYNSELVTINHIKTADIRLIRSWLAKRNCDNFTASSI
SRGLSAVKNFYRFLEKTTQLNSHIIFSIKSPKKTKLLPKALSEDDVVISLEHIEEYGNVKWVELRNKALLVLIYASGLRI
SEALSITKLHLQNLEFIRIIGKGSKERIIPWLPIAKNLITQYLEILPYKLGDNEPIFRGKQGKKLQPPVFNRELIKLKHF
YGLPQHLTAHSFRHSFASHLLEHGADLRSLQELLGHKSLSTTQNYTKTSIKHLEAVYTTAYPIKK

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790244, Length=305, Percent_Identity=30.1639344262295, Blast_Score=148, Evalue=5e-37,
Organism=Escherichia coli, GI1789261, Length=306, Percent_Identity=32.3529411764706, Blast_Score=133, Evalue=1e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011931 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 35354; Mature: 35354

Theoretical pI: Translated: 10.32; Mature: 10.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLDTSIQALINKWQKYLALQRNYSNHTVISYNNDLKHFLEFMNYYNSELVTINHIKTADI
CCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHCCCEEEEECCCHHHH
RLIRSWLAKRNCDNFTASSISRGLSAVKNFYRFLEKTTQLNSHIIFSIKSPKKTKLLPKA
HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHH
LSEDDVVISLEHIEEYGNVKWVELRNKALLVLIYASGLRISEALSITKLHLQNLEFIRII
CCCCCEEEEHHHHHHHCCEEEEEECCCEEEEEEEECCCCHHHHHHHHHHHHCCCEEEEEE
GKGSKERIIPWLPIAKNLITQYLEILPYKLGDNEPIFRGKQGKKLQPPVFNRELIKLKHF
CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
YGLPQHLTAHSFRHSFASHLLEHGADLRSLQELLGHKSLSTTQNYTKTSIKHLEAVYTTA
HCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHC
YPIKK
CCCCC
>Mature Secondary Structure
MLDTSIQALINKWQKYLALQRNYSNHTVISYNNDLKHFLEFMNYYNSELVTINHIKTADI
CCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHCCCEEEEECCCHHHH
RLIRSWLAKRNCDNFTASSISRGLSAVKNFYRFLEKTTQLNSHIIFSIKSPKKTKLLPKA
HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHH
LSEDDVVISLEHIEEYGNVKWVELRNKALLVLIYASGLRISEALSITKLHLQNLEFIRII
CCCCCEEEEHHHHHHHCCEEEEEECCCEEEEEEEECCCCHHHHHHHHHHHHCCCEEEEEE
GKGSKERIIPWLPIAKNLITQYLEILPYKLGDNEPIFRGKQGKKLQPPVFNRELIKLKHF
CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
YGLPQHLTAHSFRHSFASHLLEHGADLRSLQELLGHKSLSTTQNYTKTSIKHLEAVYTTA
HCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHC
YPIKK
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA