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The map label for this gene is ybeY [C]

Identifier: 15893065

GI number: 15893065

Start: 1054752

End: 1055255

Strand: Reverse

Name: ybeY [C]

Synonym: RC1142

Alternate gene names: 15893065

Gene position: 1055255-1054752 (Counterclockwise)

Preceding gene: 15893066

Following gene: 15893064

Centisome position: 83.17

GC content: 26.59

Gene sequence:

>504_bases
ATGATAAACGTAGAAATTGTAAGAAACTACAACAAATGGCGTGAGCATAAGCAGATAAATAAGAGTTTAATCAAAAAAAT
AACTCAAAATATTTTATTGCGGTTTGATAATTTTAGTAAAATAAAACAATTTGAATTATCAATTTTACTAACAAATGCTG
CAGAAATATTGACCTTAAACAAACAATTTCGTAATATAGAAAAAGCTACTAACGTTCTTTCTTTTCCAAGCAACGAATTA
AATTGGCAGGATTTATATTCTAAACTTGAATTTTTAGGTGACTCTGATTATATGCATTTAGGTGATATAGCATTTTGTTA
TGAGGTAATATATAACGAATCGTGCGAGCAGCACAAAACTTTTGAGAATCATTTTATTCATCTTTTAATACATAGTATTT
TACACTTAATTGGTTTTGATCATCAAAATGACACAGAAGCAAATATTATGGAAAATCTAGAAATTGAAATATTATCATAT
TTCGGTATTTTCCCCCCTTATTAA

Upstream 100 bases:

>100_bases
CTAAAATTAACGTTATCTCTAATGAAGATATACAGCTTTTAAAATATGCTCTTAAGTTACAGCTAAGTCTATAACGACTA
TTTATTCAATATTTGGTACA

Downstream 100 bases:

>100_bases
CTAAATAAAAAAATTTATGTTAAAATCTTCAAAAAAAGAAGATTCTAGTAAAAAAAATCAAAATAATAAGTTAATTTTTA
CTGTACGAAAATTATTCTCT

Product: putative metalloprotease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 167; Mature: 167

Protein sequence:

>167_residues
MINVEIVRNYNKWREHKQINKSLIKKITQNILLRFDNFSKIKQFELSILLTNAAEILTLNKQFRNIEKATNVLSFPSNEL
NWQDLYSKLEFLGDSDYMHLGDIAFCYEVIYNESCEQHKTFENHFIHLLIHSILHLIGFDHQNDTEANIMENLEIEILSY
FGIFPPY

Sequences:

>Translated_167_residues
MINVEIVRNYNKWREHKQINKSLIKKITQNILLRFDNFSKIKQFELSILLTNAAEILTLNKQFRNIEKATNVLSFPSNEL
NWQDLYSKLEFLGDSDYMHLGDIAFCYEVIYNESCEQHKTFENHFIHLLIHSILHLIGFDHQNDTEANIMENLEIEILSY
FGIFPPY
>Mature_167_residues
MINVEIVRNYNKWREHKQINKSLIKKITQNILLRFDNFSKIKQFELSILLTNAAEILTLNKQFRNIEKATNVLSFPSNEL
NWQDLYSKLEFLGDSDYMHLGDIAFCYEVIYNESCEQHKTFENHFIHLLIHSILHLIGFDHQNDTEANIMENLEIEILSY
FGIFPPY

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity [H]

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family [H]

Homologues:

Organism=Escherichia coli, GI1786880, Length=131, Percent_Identity=38.1679389312977, Blast_Score=76, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR023091
- InterPro:   IPR020549
- InterPro:   IPR002036 [H]

Pfam domain/function: PF02130 UPF0054 [H]

EC number: NA

Molecular weight: Translated: 19885; Mature: 19885

Theoretical pI: Translated: 5.82; Mature: 5.82

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MINVEIVRNYNKWREHKQINKSLIKKITQNILLRFDNFSKIKQFELSILLTNAAEILTLN
CCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCHHHHHHHH
KQFRNIEKATNVLSFPSNELNWQDLYSKLEFLGDSDYMHLGDIAFCYEVIYNESCEQHKT
HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHH
FENHFIHLLIHSILHLIGFDHQNDTEANIMENLEIEILSYFGIFPPY
HHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MINVEIVRNYNKWREHKQINKSLIKKITQNILLRFDNFSKIKQFELSILLTNAAEILTLN
CCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCHHHHHHHH
KQFRNIEKATNVLSFPSNELNWQDLYSKLEFLGDSDYMHLGDIAFCYEVIYNESCEQHKT
HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHH
FENHFIHLLIHSILHLIGFDHQNDTEANIMENLEIEILSYFGIFPPY
HHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA