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The map label for this gene is yebA [H]

Identifier: 15893016

GI number: 15893016

Start: 1018798

End: 1019652

Strand: Reverse

Name: yebA [H]

Synonym: RC1093

Alternate gene names: 15893016

Gene position: 1019652-1018798 (Counterclockwise)

Preceding gene: 15893017

Following gene: 15893015

Centisome position: 80.37

GC content: 30.18

Gene sequence:

>855_bases
ATGTCTTTTAAAAAATATATCTTTTTACTGTTTATAGTTTTTCTTGTTCAAGGTTGTAGCAGTATTAAAAAATCTAGTGA
TACTACGTTACTTGCTACTACTTCATCTCAATTAAAACAAAAATATAAAATCAGCCATGCGGATTTAGTAGTACAGTATG
ATTTAACAAACAAAAATAGCAAATGTATATATGCAAAAAACTTAGGTCTAATAATTAATAACCCTAAACAAAATAAGATT
TTTTTACACAAATTACATAATAAAAACCTGGCAGAATTTAATAAAGCAGCCGAAATAAAAATAGCTAATATAAAGGCAGT
TGTAACGAAACTACATTCAAAATATAAGTTTCTCTCTAAACCGGAAGCTAGCTATTTTGCAAAAAAACAAACTCATAGGA
ATAATATCTCAGAATTAACCAAGCTTGATAAAATAATTAGTACAATACCACTTATGATGCCGGAATATGAGCCGAAAATT
ACTAGCCATTACGGAACTAGGACAAGTCCTCATAAAAAGAAAAGAAAAAAGAAATGTTTCCATAGCGGTATTGATTTACA
AGCTAAAAAAGCAGCACCGATATATGCAGCAGCAAGCGGAATTGTTATAAAAGCCGCTAGAGCACCTGATTACGGGAATT
TTGTTGAGATTAAACATGGACGCAAATTTGTTACGAAATATGCTCATTTAAAAGAAATGTCAGTCAAGGAAGGAAATAAA
ATTAAGCGTGGTCAATTTATCGGTATACAAGGAAGCACTGGTAATGCAACGGGTGAACATTTGCATTTTGAAATTCTGTT
AGATAATAAAGCAATCAATCCGTTTGACTTTATTTTTAACTACCATAAATGTTAA

Upstream 100 bases:

>100_bases
AGTGTGGGTTAATGTTAATTAACCCTCCAAATATTAGAGGAGAATTAGAGAAATTAACAGAATATTTAAGTGGCACGAAA
TTTACATACATTTATCTTTA

Downstream 100 bases:

>100_bases
ACTATGATCAAACTTTTATATCCTGAATTTTGGCAGAAGCGAAATATTATAGCTTATTTGCTTTTGCCTATAAGCGTGAT
ATATAAATTTTTAGGCTATT

Product: putative periplasmic protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 284; Mature: 283

Protein sequence:

>284_residues
MSFKKYIFLLFIVFLVQGCSSIKKSSDTTLLATTSSQLKQKYKISHADLVVQYDLTNKNSKCIYAKNLGLIINNPKQNKI
FLHKLHNKNLAEFNKAAEIKIANIKAVVTKLHSKYKFLSKPEASYFAKKQTHRNNISELTKLDKIISTIPLMMPEYEPKI
TSHYGTRTSPHKKKRKKKCFHSGIDLQAKKAAPIYAAASGIVIKAARAPDYGNFVEIKHGRKFVTKYAHLKEMSVKEGNK
IKRGQFIGIQGSTGNATGEHLHFEILLDNKAINPFDFIFNYHKC

Sequences:

>Translated_284_residues
MSFKKYIFLLFIVFLVQGCSSIKKSSDTTLLATTSSQLKQKYKISHADLVVQYDLTNKNSKCIYAKNLGLIINNPKQNKI
FLHKLHNKNLAEFNKAAEIKIANIKAVVTKLHSKYKFLSKPEASYFAKKQTHRNNISELTKLDKIISTIPLMMPEYEPKI
TSHYGTRTSPHKKKRKKKCFHSGIDLQAKKAAPIYAAASGIVIKAARAPDYGNFVEIKHGRKFVTKYAHLKEMSVKEGNK
IKRGQFIGIQGSTGNATGEHLHFEILLDNKAINPFDFIFNYHKC
>Mature_283_residues
SFKKYIFLLFIVFLVQGCSSIKKSSDTTLLATTSSQLKQKYKISHADLVVQYDLTNKNSKCIYAKNLGLIINNPKQNKIF
LHKLHNKNLAEFNKAAEIKIANIKAVVTKLHSKYKFLSKPEASYFAKKQTHRNNISELTKLDKIISTIPLMMPEYEPKIT
SHYGTRTSPHKKKRKKKCFHSGIDLQAKKAAPIYAAASGIVIKAARAPDYGNFVEIKHGRKFVTKYAHLKEMSVKEGNKI
KRGQFIGIQGSTGNATGEHLHFEILLDNKAINPFDFIFNYHKC

Specific function: Could be involved in cell wall degradation or formation [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=120, Percent_Identity=35, Blast_Score=98, Evalue=6e-22,
Organism=Escherichia coli, GI87082174, Length=97, Percent_Identity=40.2061855670103, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI1789099, Length=97, Percent_Identity=40.2061855670103, Blast_Score=71, Evalue=9e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR013731
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF08525 OapA_N; PF01551 Peptidase_M23 [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 32263; Mature: 32132

Theoretical pI: Translated: 10.59; Mature: 10.59

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFKKYIFLLFIVFLVQGCSSIKKSSDTTLLATTSSQLKQKYKISHADLVVQYDLTNKNS
CCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHCCCCEEEEEEEECCCCCC
KCIYAKNLGLIINNPKQNKIFLHKLHNKNLAEFNKAAEIKIANIKAVVTKLHSKYKFLSK
CEEEEECCEEEEECCCCCCEEEEEECCCCHHHHCCCCEEEEHHHHHHHHHHHHHHHHHCC
PEASYFAKKQTHRNNISELTKLDKIISTIPLMMPEYEPKITSHYGTRTSPHKKKRKKKCF
CCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCHHCCCCCCCCHHHHHHHHHHH
HSGIDLQAKKAAPIYAAASGIVIKAARAPDYGNFVEIKHGRKFVTKYAHLKEMSVKEGNK
HCCCCCEECCCCCEEEECCCEEEEEECCCCCCCEEEEECCHHHHHHHHHHHHHHHCCCCC
IKRGQFIGIQGSTGNATGEHLHFEILLDNKAINPFDFIFNYHKC
CCCCEEEEEECCCCCCCCCEEEEEEEECCCCCCHHHHHEECCCC
>Mature Secondary Structure 
SFKKYIFLLFIVFLVQGCSSIKKSSDTTLLATTSSQLKQKYKISHADLVVQYDLTNKNS
CHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHCCCCEEEEEEEECCCCCC
KCIYAKNLGLIINNPKQNKIFLHKLHNKNLAEFNKAAEIKIANIKAVVTKLHSKYKFLSK
CEEEEECCEEEEECCCCCCEEEEEECCCCHHHHCCCCEEEEHHHHHHHHHHHHHHHHHCC
PEASYFAKKQTHRNNISELTKLDKIISTIPLMMPEYEPKITSHYGTRTSPHKKKRKKKCF
CCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCHHCCCCCCCCHHHHHHHHHHH
HSGIDLQAKKAAPIYAAASGIVIKAARAPDYGNFVEIKHGRKFVTKYAHLKEMSVKEGNK
HCCCCCEECCCCCEEEECCCEEEEEECCCCCCCEEEEECCHHHHHHHHHHHHHHHCCCCC
IKRGQFIGIQGSTGNATGEHLHFEILLDNKAINPFDFIFNYHKC
CCCCEEEEEECCCCCCCCCEEEEEEEECCCCCCHHHHHEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]