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The map label for this gene is paaH [C]

Identifier: 15892764

GI number: 15892764

Start: 793100

End: 793585

Strand: Reverse

Name: paaH [C]

Synonym: RC0841

Alternate gene names: 15892764

Gene position: 793585-793100 (Counterclockwise)

Preceding gene: 15892765

Following gene: 15892763

Centisome position: 62.55

GC content: 32.92

Gene sequence:

>486_bases
ATGCAATTATTGCTTCTAATACCTCTACATTACCGCTTGAAAGACTCAAAGAGAATTTACCAGATAATATTAAATCTAGG
TTCGTTATTACGCATTTCTTCAATCCGCCAAGATAATATGGAACTGCTTGAGTTAATTATAGACCCTATGATAAAGGCTG
AAGTAATAGAAAGAGTATCAGAGTTCTTAACGAAAACGCTTGGTAAAATTATAGTAAAATGTAATGATACGTCTGGTTTT
ATTGCTAATAGAGTAGGGTATTTTTTACTTGAATTAGTAGCCCGTAAAGCGATAAGTCAGAATCTTGATGTTGCTACTAT
AGATAAAATATTTACTACATTTTTGGGGTTGCCGAGTACCGGAATTTTCGGTTTATATGATCTAATCGGGTATGACGTAA
TGAAGTTAATTTCAAGTTCATTACTTGCCTCTCTTCCTGCAAATGATGCTTATCATAAAATAATATGTAAAGACCCCTGT
TCTTGA

Upstream 100 bases:

>100_bases
GATTTAATTAAAGAATGTGATTTAGTGATTGAAGTTATTGTTGAGAAGTTAGAAATCAAACACCAATTATATAATAAAAT
TATTCCTTATCTTAAAGAAG

Downstream 100 bases:

>100_bases
TAAGATGATAGAGAAGCAGTTAATTGGACGTAAAGGTGACGGTGGATTTTATCGTTTATCGGTATCAAATGGCAAAAAGA
TTAAAGAAGTTATCAATATA

Product: putative 3-hydroxyacyl-CoA dehydrogenase (FadB)

Products: 3-oxoacyl-CoA; NADH; H+

Alternate protein names: NA

Number of amino acids: Translated: 161; Mature: 161

Protein sequence:

>161_residues
MQLLLLIPLHYRLKDSKRIYQIILNLGSLLRISSIRQDNMELLELIIDPMIKAEVIERVSEFLTKTLGKIIVKCNDTSGF
IANRVGYFLLELVARKAISQNLDVATIDKIFTTFLGLPSTGIFGLYDLIGYDVMKLISSSLLASLPANDAYHKIICKDPC
S

Sequences:

>Translated_161_residues
MQLLLLIPLHYRLKDSKRIYQIILNLGSLLRISSIRQDNMELLELIIDPMIKAEVIERVSEFLTKTLGKIIVKCNDTSGF
IANRVGYFLLELVARKAISQNLDVATIDKIFTTFLGLPSTGIFGLYDLIGYDVMKLISSSLLASLPANDAYHKIICKDPC
S
>Mature_161_residues
MQLLLLIPLHYRLKDSKRIYQIILNLGSLLRISSIRQDNMELLELIIDPMIKAEVIERVSEFLTKTLGKIIVKCNDTSGF
IANRVGYFLLELVARKAISQNLDVATIDKIFTTFLGLPSTGIFGLYDLIGYDVMKLISSSLLASLPANDAYHKIICKDPC
S

Specific function: Butyrate/butanol-producing pathway. Phenylacetic acid aerobic catabolism. [C]

COG id: COG1250

COG function: function code I; 3-hydroxyacyl-CoA dehydrogenase

Gene ontology:

Cell location: Mitochondria or Peroxisomes [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y841_RICCN (Q92HD0)

Other databases:

- EMBL:   AE006914
- PIR:   A97805
- RefSeq:   NP_360478.1
- HSSP:   P00348
- ProteinModelPortal:   Q92HD0
- SMR:   Q92HD0
- GeneID:   927804
- GenomeReviews:   AE006914_GR
- KEGG:   rco:RC0841
- NMPDR:   fig|272944.1.peg.841
- BioCyc:   RCON272944:RC0841-MONOMER
- InterPro:   IPR006108
- InterPro:   IPR008927
- InterPro:   IPR013328
- InterPro:   IPR016040
- Gene3D:   G3DSA:3.40.50.720
- Gene3D:   G3DSA:1.10.1040.10

Pfam domain/function: PF00725 3HCDH; SSF48179 6DGDH_C_like

EC number: 1.1.1.35; 4.2.1.17

Molecular weight: Translated: 18091; Mature: 18091

Theoretical pI: Translated: 8.46; Mature: 8.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQLLLLIPLHYRLKDSKRIYQIILNLGSLLRISSIRQDNMELLELIIDPMIKAEVIERVS
CCEEEEECCHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
EFLTKTLGKIIVKCNDTSGFIANRVGYFLLELVARKAISQNLDVATIDKIFTTFLGLPST
HHHHHHHHHHEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCC
GIFGLYDLIGYDVMKLISSSLLASLPANDAYHKIICKDPCS
CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHEEEECCCCC
>Mature Secondary Structure
MQLLLLIPLHYRLKDSKRIYQIILNLGSLLRISSIRQDNMELLELIIDPMIKAEVIERVS
CCEEEEECCHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
EFLTKTLGKIIVKCNDTSGFIANRVGYFLLELVARKAISQNLDVATIDKIFTTFLGLPST
HHHHHHHHHHEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCC
GIFGLYDLIGYDVMKLISSSLLASLPANDAYHKIICKDPCS
CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: (S)-3-hydroxyacyl-CoA; NAD+

Specific reaction: (S)-3-hydroxyacyl-CoA + NAD+ = 3-oxoacyl-CoA + NADH + H+

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11557893