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The map label for this gene is tlyA [H]

Identifier: 15892745

GI number: 15892745

Start: 777005

End: 777760

Strand: Reverse

Name: tlyA [H]

Synonym: RC0822

Alternate gene names: 15892745

Gene position: 777760-777005 (Counterclockwise)

Preceding gene: 15892746

Following gene: 15892743

Centisome position: 61.3

GC content: 33.47

Gene sequence:

>756_bases
ATGACTAAAATAAGGCTTGATGAATATTTGCTGCAAAAAGGTTTTGTAACAGATATTACCATAGCACGAAGTTTGATTAT
CCAAGGTAAAGTACATAATAAGCATGAGCAGTTAATTAAGCCTGGGATACAGGTTAATATAAATGACACCGAAATTAAGG
TAAAACTACCGCAGCATAATTATGTTTCAAGAGGGGCATTAAAATTAATTGCCGCTTTGGATTATTTTAAAATTGATCCC
GAAAATTTAGTTTGTATTGATATCGGTAGTAGTACCGGCGGTTTTACAGAAGTGTTACTTGAGCGTAAAGCAAAATTAAT
TTTTGCCGTAGATGTCGGTTATGGCGAACTTCATCCTAAATTACGCGACAATCCACACATTAAGGTGCTTGAGAAGACTA
ATGCACGATATTTAACCGATAAACAAATAATAACGAAGCCTGATTTAATTGTTTGCGATGCCAGCTTTATTAGTTTAACT
ACTATATTACCGACTGTACTAAATTTAGTTAAAGAAGATTGCATGCTTATTGCTTTAATAAAACCGCAGTTTGAGGTCGA
AAAGCATGAAGTAGAGCAGGGAGGAGTTATTAAAAATCCTCTCTTACATCAAAAAGTATGCGATAAAATCAAAGATTGGC
TTGAGAAAGAGCATAATTTTAAAATATTCGGTATAATAGCAAGTCCAATACTAGGAGCTAAGGGGAATCAAGAGTTTTTA
ATATGCGGAAAAAGAAAAACGCTTATTTTTCTATAG

Upstream 100 bases:

>100_bases
TATTATGTCTAATTGAAACTGTAACTTTCAATTAGACAAATTGTATATTTTCTATCTAATGGGCCCTTATAACATAAGTT
AAATTCAAATTTAAACAGTA

Downstream 100 bases:

>100_bases
TTTATCCTTAATTTGAATTGTTTTAGTAATCATTGCATCTTCTAATGTATAATTATTCAATGTTTTTATAAATGCTTCAC
TTGCTTCTTTAATAAAATGT

Product: hemolysin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 251; Mature: 250

Protein sequence:

>251_residues
MTKIRLDEYLLQKGFVTDITIARSLIIQGKVHNKHEQLIKPGIQVNINDTEIKVKLPQHNYVSRGALKLIAALDYFKIDP
ENLVCIDIGSSTGGFTEVLLERKAKLIFAVDVGYGELHPKLRDNPHIKVLEKTNARYLTDKQIITKPDLIVCDASFISLT
TILPTVLNLVKEDCMLIALIKPQFEVEKHEVEQGGVIKNPLLHQKVCDKIKDWLEKEHNFKIFGIIASPILGAKGNQEFL
ICGKRKTLIFL

Sequences:

>Translated_251_residues
MTKIRLDEYLLQKGFVTDITIARSLIIQGKVHNKHEQLIKPGIQVNINDTEIKVKLPQHNYVSRGALKLIAALDYFKIDP
ENLVCIDIGSSTGGFTEVLLERKAKLIFAVDVGYGELHPKLRDNPHIKVLEKTNARYLTDKQIITKPDLIVCDASFISLT
TILPTVLNLVKEDCMLIALIKPQFEVEKHEVEQGGVIKNPLLHQKVCDKIKDWLEKEHNFKIFGIIASPILGAKGNQEFL
ICGKRKTLIFL
>Mature_250_residues
TKIRLDEYLLQKGFVTDITIARSLIIQGKVHNKHEQLIKPGIQVNINDTEIKVKLPQHNYVSRGALKLIAALDYFKIDPE
NLVCIDIGSSTGGFTEVLLERKAKLIFAVDVGYGELHPKLRDNPHIKVLEKTNARYLTDKQIITKPDLIVCDASFISLTT
ILPTVLNLVKEDCMLIALIKPQFEVEKHEVEQGGVIKNPLLHQKVCDKIKDWLEKEHNFKIFGIIASPILGAKGNQEFLI
CGKRKTLIFL

Specific function: Unknown

COG id: COG1189

COG function: function code J; Predicted rRNA methylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004538
- InterPro:   IPR002877
- InterPro:   IPR002942 [H]

Pfam domain/function: PF01728 FtsJ; PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 28384; Mature: 28253

Theoretical pI: Translated: 8.93; Mature: 8.93

Prosite motif: PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKIRLDEYLLQKGFVTDITIARSLIIQGKVHNKHEQLIKPGIQVNINDTEIKVKLPQHN
CCEEEHHHHHHHCCCHHHHHHHHHHHEECCCCCCHHHHHCCCCEEEECCCEEEEECCCCC
YVSRGALKLIAALDYFKIDPENLVCIDIGSSTGGFTEVLLERKAKLIFAVDVGYGELHPK
CHHHHHHHHHHHHHHEEECCCCEEEEEECCCCCHHHHHHHHCCCEEEEEEECCCCCCCCC
LRDNPHIKVLEKTNARYLTDKQIITKPDLIVCDASFISLTTILPTVLNLVKEDCMLIALI
CCCCCCEEEEECCCCEEEECCEEECCCCEEEECCHHHHHHHHHHHHHHHHHHCEEEEEEE
KPQFEVEKHEVEQGGVIKNPLLHQKVCDKIKDWLEKEHNFKIFGIIASPILGAKGNQEFL
CCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEECCEECCCCCCEEE
ICGKRKTLIFL
EECCCEEEEEC
>Mature Secondary Structure 
TKIRLDEYLLQKGFVTDITIARSLIIQGKVHNKHEQLIKPGIQVNINDTEIKVKLPQHN
CEEEHHHHHHHCCCHHHHHHHHHHHEECCCCCCHHHHHCCCCEEEECCCEEEEECCCCC
YVSRGALKLIAALDYFKIDPENLVCIDIGSSTGGFTEVLLERKAKLIFAVDVGYGELHPK
CHHHHHHHHHHHHHHEEECCCCEEEEEECCCCCHHHHHHHHCCCEEEEEEECCCCCCCCC
LRDNPHIKVLEKTNARYLTDKQIITKPDLIVCDASFISLTTILPTVLNLVKEDCMLIALI
CCCCCCEEEEECCCCEEEECCEEECCCCEEEECCHHHHHHHHHHHHHHHHHHCEEEEEEE
KPQFEVEKHEVEQGGVIKNPLLHQKVCDKIKDWLEKEHNFKIFGIIASPILGAKGNQEFL
CCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEECCEECCCCCCEEE
ICGKRKTLIFL
EECCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377; 2507400 [H]