Click here to switch to the map view.

The map label for this gene is polA [H]

Identifier: 15892598

GI number: 15892598

Start: 655636

End: 655863

Strand: Reverse

Name: polA [H]

Synonym: RC0675

Alternate gene names: 15892598

Gene position: 655863-655636 (Counterclockwise)

Preceding gene: 15892601

Following gene: 15892594

Centisome position: 51.69

GC content: 36.84

Gene sequence:

>228_bases
ATGTCAAAAACTTTAATAGACATCTTTCCAAAAACTTATAGAGAGGAATTTAAAGGAGACACGAAAGCACTTGTCACCGC
AGCATACAAACTAGTACGTGAGGATACGAGTCTAGGCTTGATGTATAAATTACCTCTAGAAGCGAAGTTTGAGAAAATGT
CTAATGCCTACAACCGCTACCGTGAATATGTGGAGGATGGAGTTTTATATGCTTTAGCATCTTTTTAA

Upstream 100 bases:

>100_bases
CTAATAATTTAGAAAAATGGGTTTTAGCATCAAAGGCTGTAATTGTGTTTTTCATATAATGAACTAGTTAATTAACTAGT
CAGTTATAACATAAATTTAA

Downstream 100 bases:

>100_bases
GTAGTGTATCACGCTTAAGTTTTGATAAAGAATCTAAGAAAGTTTTGCCGTTTAAATACTCTATTTCATGCTGAATTACA
GTTGCTAAAAAGCCTTCTGC

Product: hypothetical protein

Products: NA

Alternate protein names: POL I [H]

Number of amino acids: Translated: 75; Mature: 74

Protein sequence:

>75_residues
MSKTLIDIFPKTYREEFKGDTKALVTAAYKLVREDTSLGLMYKLPLEAKFEKMSNAYNRYREYVEDGVLYALASF

Sequences:

>Translated_75_residues
MSKTLIDIFPKTYREEFKGDTKALVTAAYKLVREDTSLGLMYKLPLEAKFEKMSNAYNRYREYVEDGVLYALASF
>Mature_74_residues
SKTLIDIFPKTYREEFKGDTKALVTAAYKLVREDTSLGLMYKLPLEAKFEKMSNAYNRYREYVEDGVLYALASF

Specific function: In addition to polymerase activity, this DNA polymerase 5' to 3' exonuclease activity [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 RPE1 insert domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020046
- InterPro:   IPR020045
- InterPro:   IPR002421
- InterPro:   IPR020047
- InterPro:   IPR019760
- InterPro:   IPR001098
- InterPro:   IPR018320
- InterPro:   IPR002298
- InterPro:   IPR008918
- InterPro:   IPR005728
- InterPro:   IPR012337 [H]

Pfam domain/function: PF01367 5_3_exonuc; PF02739 5_3_exonuc_N; PF00476 DNA_pol_A [H]

EC number: =2.7.7.7 [H]

Molecular weight: Translated: 8743; Mature: 8612

Theoretical pI: Translated: 8.78; Mature: 8.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKTLIDIFPKTYREEFKGDTKALVTAAYKLVREDTSLGLMYKLPLEAKFEKMSNAYNRY
CCCCHHHHCCHHHHHHHCCCHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHH
REYVEDGVLYALASF
HHHHHHHHHHHHHCC
>Mature Secondary Structure 
SKTLIDIFPKTYREEFKGDTKALVTAAYKLVREDTSLGLMYKLPLEAKFEKMSNAYNRY
CCCHHHHCCHHHHHHHCCCHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHH
REYVEDGVLYALASF
HHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10486973; 11030655 [H]