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The map label for this gene is cycM

Identifier: 15892260

GI number: 15892260

Start: 338126

End: 338653

Strand: Reverse

Name: cycM

Synonym: RC0337

Alternate gene names: 15892260

Gene position: 338653-338126 (Counterclockwise)

Preceding gene: 15892262

Following gene: 15892259

Centisome position: 26.69

GC content: 37.5

Gene sequence:

>528_bases
ATGTCTGGAAAAGAATTAAATAAAATTGTTGCAGCCATCTTATTTGCTAGTTTAATTGCTATGATGGTTGGATTTGTTGC
AAATATATTATACAAGCCCACTCTAGAGTTACAACATCGCGGCTACAGCGTTGCGGTTCAAGAATCATCAGAAAATCAAA
ATACTACCGCACTAGAGCAAGCACCGGTAAATATACCGGAATTAATGAAGACTGCTAACGCCGATAACGGTCGTGAAATA
GCCAAGAAATGTTTAATGTGTCATTCTCTTGATAAAGACGGTCCAAATAAACTAGGACCGCATCTTTGGGATGTCACAGG
CAGACCAAAAGCAAGCATAGCAGACTATAAATATTCCCCTGCTCTATCAAAACTTGGCGGCGTATGGGATGATGATAGTT
TATTTGCTTTCTTACATAAACCAAGTAGCTATGCACCAGGAACTAAAATGTCCTTTGCCGGTATCTCAAAACCACAAGAC
ATAGCTGACGTAATATTATTTTTAAAAACTTATGTTCATGATAAATAA

Upstream 100 bases:

>100_bases
CAAAGAACAAATATTTTTATAAATTTTTCTTTTATTTATTTAATTAACTTCTCTTACAACTGAAATTATAGTATAAATTC
TAATAAAAAAAACAAAATAA

Downstream 100 bases:

>100_bases
TTATCTCACCGAAATATGGTTAATAATAGGTATAATTTGCATAGTTGTTGAATTCTTTACAGTTCCAAGTATTGGATTCT
TATTCTTTGGGCTTGGAGCG

Product: cytochrome c

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 175; Mature: 174

Protein sequence:

>175_residues
MSGKELNKIVAAILFASLIAMMVGFVANILYKPTLELQHRGYSVAVQESSENQNTTALEQAPVNIPELMKTANADNGREI
AKKCLMCHSLDKDGPNKLGPHLWDVTGRPKASIADYKYSPALSKLGGVWDDDSLFAFLHKPSSYAPGTKMSFAGISKPQD
IADVILFLKTYVHDK

Sequences:

>Translated_175_residues
MSGKELNKIVAAILFASLIAMMVGFVANILYKPTLELQHRGYSVAVQESSENQNTTALEQAPVNIPELMKTANADNGREI
AKKCLMCHSLDKDGPNKLGPHLWDVTGRPKASIADYKYSPALSKLGGVWDDDSLFAFLHKPSSYAPGTKMSFAGISKPQD
IADVILFLKTYVHDK
>Mature_174_residues
SGKELNKIVAAILFASLIAMMVGFVANILYKPTLELQHRGYSVAVQESSENQNTTALEQAPVNIPELMKTANADNGREIA
KKCLMCHSLDKDGPNKLGPHLWDVTGRPKASIADYKYSPALSKLGGVWDDDSLFAFLHKPSSYAPGTKMSFAGISKPQDI
ADVILFLKTYVHDK

Specific function: May be involved in electron transfer from bc1 complex to aa3

COG id: COG3474

COG function: function code C; Cytochrome c2

Gene ontology:

Cell location: Cell membrane; Single-pass type II membrane protein

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome c family

Homologues:

Organism=Homo sapiens, GI11128019, Length=99, Percent_Identity=38.3838383838384, Blast_Score=82, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17539604, Length=96, Percent_Identity=38.5416666666667, Blast_Score=77, Evalue=6e-15,
Organism=Caenorhabditis elegans, GI17566554, Length=106, Percent_Identity=39.622641509434, Blast_Score=75, Evalue=2e-14,
Organism=Saccharomyces cerevisiae, GI6322508, Length=102, Percent_Identity=38.2352941176471, Blast_Score=85, Evalue=6e-18,
Organism=Saccharomyces cerevisiae, GI6320796, Length=86, Percent_Identity=39.5348837209302, Blast_Score=84, Evalue=2e-17,
Organism=Drosophila melanogaster, GI17137204, Length=103, Percent_Identity=42.7184466019417, Blast_Score=91, Evalue=3e-19,
Organism=Drosophila melanogaster, GI17137228, Length=100, Percent_Identity=36, Blast_Score=85, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CYCM_RICCN (Q92IT3)

Other databases:

- EMBL:   AE006914
- PIR:   A97742
- RefSeq:   NP_359974.1
- HSSP:   P00044
- ProteinModelPortal:   Q92IT3
- SMR:   Q92IT3
- GeneID:   927511
- GenomeReviews:   AE006914_GR
- KEGG:   rco:RC0337
- NMPDR:   fig|272944.1.peg.337
- OMA:   QHRGYSV
- ProtClustDB:   CLSK870824
- BioCyc:   RCON272944:RC0337-MONOMER
- GO:   GO:0006810
- InterPro:   IPR002327
- InterPro:   IPR009056
- InterPro:   IPR003088
- Gene3D:   G3DSA:1.10.760.10
- PANTHER:   PTHR11961
- PRINTS:   PR00604

Pfam domain/function: PF00034 Cytochrom_C; SSF46626 Cytochrome_c

EC number: NA

Molecular weight: Translated: 19139; Mature: 19008

Theoretical pI: Translated: 8.21; Mature: 8.21

Prosite motif: PS51007 CYTC

Important sites: BINDING 84-84 BINDING 87-87

Signals:

None

Transmembrane regions:

HASH(0xc283638)-;

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGKELNKIVAAILFASLIAMMVGFVANILYKPTLELQHRGYSVAVQESSENQNTTALEQ
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCEEEEEECCCCCCCCHHHHH
APVNIPELMKTANADNGREIAKKCLMCHSLDKDGPNKLGPHLWDVTGRPKASIADYKYSP
CCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEECCCCCCCCCCCCCCCCH
ALSKLGGVWDDDSLFAFLHKPSSYAPGTKMSFAGISKPQDIADVILFLKTYVHDK
HHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCH
>Mature Secondary Structure 
SGKELNKIVAAILFASLIAMMVGFVANILYKPTLELQHRGYSVAVQESSENQNTTALEQ
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCEEEEEECCCCCCCCHHHHH
APVNIPELMKTANADNGREIAKKCLMCHSLDKDGPNKLGPHLWDVTGRPKASIADYKYSP
CCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEECCCCCCCCCCCCCCCCH
ALSKLGGVWDDDSLFAFLHKPSSYAPGTKMSFAGISKPQDIADVILFLKTYVHDK
HHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCH

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11557893