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The map label for this gene is omp1 [H]

Identifier: 15892125

GI number: 15892125

Start: 209068

End: 211374

Strand: Reverse

Name: omp1 [H]

Synonym: RC0202

Alternate gene names: 15892125

Gene position: 211374-209068 (Counterclockwise)

Preceding gene: 15892126

Following gene: 15892123

Centisome position: 16.66

GC content: 32.03

Gene sequence:

>2307_bases
GTGACAATCAGATCAATTAGTAAGTTAACAATTTTATTATTAACGATTTTTTATTATCATATTTCATTAGCTGACTCTGT
AATTCGTAAAATAACTATCGAAGGTAATCATAGGGTTGAGCGTTCTACTATTGAGAGCTATTTAAAGCTTAAGGTAGGAG
AAACCTATAATAATTCTAAAGAAGATGAGGTAATAAAACGTTTATATGCCACCTCACTTTTTAGAAATATAAATATGCAT
ATAACAAATGATGGTAATTTAATAGTTAACGTTACTGAAACGCCTTTTATAAGTAGTGTAGTATTTAGCGGTAATTCTAA
AATCAAAACTAATATGCTCGCTAAAGAAATTTACACAATGTCGGGTGAATCTCTTAGCCAAGCTAAAATTGAATTAGATG
TAAAGAAAATATTAGAAATTTATAAACGTAGCGGACGTTTTGCTACTACGGTAACACCTAAAATCGAAAATTTAGAAAAC
AACAGAGTTAAGGTTATTTTTGATATAGCAGAAGGACCAAAAACCGGTATTAACTATATTTATTTTAGCGGTAATGAAAA
TTATAGTGATTCAGAACTTAAGTCTATTGTTTTAACTAAAGAATCTCGTTGGTTTCGTTTTTTAGAAAGTAACGATACTT
ACGATCCTGATAGAATGGAGTATGATAAAGAATTACTGAGAGATTTTTATCAATCTGTAGGTTTTGCAGATTTTAGAGTA
ATTTCGGCATCGGCAGAACTCAATAATACTAAAGAATATTTCACCCTTACCTATTCCATTGAAGAGGGAGAAAAATATAG
CTTCGGTAATATTACAATAGATAATAAATTAACTAATATAGATATAACACCGCTTAATAAAATTGTTAATATTAAGCAAG
GCAAGGTTTTCAATATGAAAAAGGTTGATGATATAGCTGAAAAAATCGGAGAATATTTTACAGCGAACGGTTACCCTGCG
GTAAATGTTTATCCGAATATAATGAAAAATGCTAATCATACTGCAGATATTAAATTTATTATTGAAAAAGCCGATAAGGT
TTATATTAATAAAATTAATATTATTAATAACCTTAAAACCGAAGACCCTGTTATAAGAAGAGAATTTAAAATAGAAGAAG
GTGATATAATTAATCGTTCATATATTGAAAAAGGTGAGCGTAATCTTAGAAATTTAGATTATTTTGAGAAAGTAGCAATT
AGCTTAGCTCCGACTAAAGCTAAAGATAAATATGATGTTAACGTTGAAGTTGATGAAAAATCTACTTCCTCTATAGGTTT
TGATTTAGGATATAATACTGCCGGCGGTTTATTCGGACGTTTCTCTTTCTTAGAGCGTAATTTAGTCGGTACCGGGAAAC
TGCTTAATGCCGGTGTGCAAGTAAGTAAAAACACTACAAGCTATTACGGTGGTATTACCGCACCGCACTTTTTAGATCGT
GATTTATCACTTGGCGTAAACACATTTAGAAACTATACCGGACGCGGTGCTAGTGTATTAAATACAACTGATCAAAGCTA
TAAGTTACACTCTATAGGAGTCAAAACTTCTCTTGGTTATGAAATTAAAGAGGATTTAGGTCACGAAATAGATTATTTAA
TCAAACGTGATATTTTAAGTGCTCCAACTCCATCAAGCTCAATATTCTTAAAGGAACAAATGGGAAGATTCATTACTTCT
GCTATAGGACATACTATTACTTATGATCAAACCGATAATAAAATTGTTCCAAAGAACGGTTATTTAGTAAGTGGCACACA
AGAATTTGCCGGCGTTGGAGGTAATAACAAATATATAAAGCATGAAGTTGACGGTAAATATTATAAATCTTTCATACATA
ACAAGCTTACTTTAAAATTATCTGCTTCCGGAGGCAATATTACAGGCCTTGGAGGAAAAATTATTAGAATTTCCGATCGC
TTTAATTTAGGTGATTATAGTTTAAGAGGCTTTGCAAACGGTGGTGTAGGACCTCGTGAAAAGGTCACTAACGAAGGACT
TGGTGGTGAGCGATATTACAAATTCTCAACAGAGCTTAATTTCCCAACACCTATACCTGAGGAATTTAATTTAACTGGTA
CAGTCTTTATGGATTTAGGAAGCGTTGGGGGAGTAGGCCTAAATAAGAAACAATATCAAACTCCAAACGGTTTTTATAAT
GATACATCTCTTAGAGCTTCCATTGGTTTCGGCTTTATTTGGGTAACACGTTTTGCACCAATCAGAATGGATTGGGGTTT
CCCGATTAAGAAGAAGAAATATGACGATACGCAGCATTTCCATTTAAGATTTTCGACGCATTTATAA

Upstream 100 bases:

>100_bases
GAACGCGGTATCTAATTTATTATTTTTACCGTGGTCAAGCCACGGGATGACATTGGGTTTAAACACAGAAATTTAAATTA
AATCTTAAAGAAGGTTTTAG

Downstream 100 bases:

>100_bases
AGATGTCTCATTGTCACCCCGTGGCTTGACCACGGGGTCCAATTAAGGATGCTAGTCTTTTAGCATTTTAAAATTTTTTA
TTGGATTGCCACGCTCCTTG

Product: outer membrane protein omp1

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 768; Mature: 767

Protein sequence:

>768_residues
MTIRSISKLTILLLTIFYYHISLADSVIRKITIEGNHRVERSTIESYLKLKVGETYNNSKEDEVIKRLYATSLFRNINMH
ITNDGNLIVNVTETPFISSVVFSGNSKIKTNMLAKEIYTMSGESLSQAKIELDVKKILEIYKRSGRFATTVTPKIENLEN
NRVKVIFDIAEGPKTGINYIYFSGNENYSDSELKSIVLTKESRWFRFLESNDTYDPDRMEYDKELLRDFYQSVGFADFRV
ISASAELNNTKEYFTLTYSIEEGEKYSFGNITIDNKLTNIDITPLNKIVNIKQGKVFNMKKVDDIAEKIGEYFTANGYPA
VNVYPNIMKNANHTADIKFIIEKADKVYINKINIINNLKTEDPVIRREFKIEEGDIINRSYIEKGERNLRNLDYFEKVAI
SLAPTKAKDKYDVNVEVDEKSTSSIGFDLGYNTAGGLFGRFSFLERNLVGTGKLLNAGVQVSKNTTSYYGGITAPHFLDR
DLSLGVNTFRNYTGRGASVLNTTDQSYKLHSIGVKTSLGYEIKEDLGHEIDYLIKRDILSAPTPSSSIFLKEQMGRFITS
AIGHTITYDQTDNKIVPKNGYLVSGTQEFAGVGGNNKYIKHEVDGKYYKSFIHNKLTLKLSASGGNITGLGGKIIRISDR
FNLGDYSLRGFANGGVGPREKVTNEGLGGERYYKFSTELNFPTPIPEEFNLTGTVFMDLGSVGGVGLNKKQYQTPNGFYN
DTSLRASIGFGFIWVTRFAPIRMDWGFPIKKKKYDDTQHFHLRFSTHL

Sequences:

>Translated_768_residues
MTIRSISKLTILLLTIFYYHISLADSVIRKITIEGNHRVERSTIESYLKLKVGETYNNSKEDEVIKRLYATSLFRNINMH
ITNDGNLIVNVTETPFISSVVFSGNSKIKTNMLAKEIYTMSGESLSQAKIELDVKKILEIYKRSGRFATTVTPKIENLEN
NRVKVIFDIAEGPKTGINYIYFSGNENYSDSELKSIVLTKESRWFRFLESNDTYDPDRMEYDKELLRDFYQSVGFADFRV
ISASAELNNTKEYFTLTYSIEEGEKYSFGNITIDNKLTNIDITPLNKIVNIKQGKVFNMKKVDDIAEKIGEYFTANGYPA
VNVYPNIMKNANHTADIKFIIEKADKVYINKINIINNLKTEDPVIRREFKIEEGDIINRSYIEKGERNLRNLDYFEKVAI
SLAPTKAKDKYDVNVEVDEKSTSSIGFDLGYNTAGGLFGRFSFLERNLVGTGKLLNAGVQVSKNTTSYYGGITAPHFLDR
DLSLGVNTFRNYTGRGASVLNTTDQSYKLHSIGVKTSLGYEIKEDLGHEIDYLIKRDILSAPTPSSSIFLKEQMGRFITS
AIGHTITYDQTDNKIVPKNGYLVSGTQEFAGVGGNNKYIKHEVDGKYYKSFIHNKLTLKLSASGGNITGLGGKIIRISDR
FNLGDYSLRGFANGGVGPREKVTNEGLGGERYYKFSTELNFPTPIPEEFNLTGTVFMDLGSVGGVGLNKKQYQTPNGFYN
DTSLRASIGFGFIWVTRFAPIRMDWGFPIKKKKYDDTQHFHLRFSTHL
>Mature_767_residues
TIRSISKLTILLLTIFYYHISLADSVIRKITIEGNHRVERSTIESYLKLKVGETYNNSKEDEVIKRLYATSLFRNINMHI
TNDGNLIVNVTETPFISSVVFSGNSKIKTNMLAKEIYTMSGESLSQAKIELDVKKILEIYKRSGRFATTVTPKIENLENN
RVKVIFDIAEGPKTGINYIYFSGNENYSDSELKSIVLTKESRWFRFLESNDTYDPDRMEYDKELLRDFYQSVGFADFRVI
SASAELNNTKEYFTLTYSIEEGEKYSFGNITIDNKLTNIDITPLNKIVNIKQGKVFNMKKVDDIAEKIGEYFTANGYPAV
NVYPNIMKNANHTADIKFIIEKADKVYINKINIINNLKTEDPVIRREFKIEEGDIINRSYIEKGERNLRNLDYFEKVAIS
LAPTKAKDKYDVNVEVDEKSTSSIGFDLGYNTAGGLFGRFSFLERNLVGTGKLLNAGVQVSKNTTSYYGGITAPHFLDRD
LSLGVNTFRNYTGRGASVLNTTDQSYKLHSIGVKTSLGYEIKEDLGHEIDYLIKRDILSAPTPSSSIFLKEQMGRFITSA
IGHTITYDQTDNKIVPKNGYLVSGTQEFAGVGGNNKYIKHEVDGKYYKSFIHNKLTLKLSASGGNITGLGGKIIRISDRF
NLGDYSLRGFANGGVGPREKVTNEGLGGERYYKFSTELNFPTPIPEEFNLTGTVFMDLGSVGGVGLNKKQYQTPNGFYND
TSLRASIGFGFIWVTRFAPIRMDWGFPIKKKKYDDTQHFHLRFSTHL

Specific function: Unknown

COG id: COG4775

COG function: function code M; Outer membrane protein/protective antigen OMA87

Gene ontology:

Cell location: Cell outer membrane (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the surface antigen D15 family [H]

Homologues:

Organism=Homo sapiens, GI225543166, Length=359, Percent_Identity=25.3481894150418, Blast_Score=69, Evalue=1e-11,
Organism=Escherichia coli, GI1786374, Length=797, Percent_Identity=26.474278544542, Blast_Score=223, Evalue=5e-59,

Paralogues:

None

Copy number: 180 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 80 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 380 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). 220 Molecules/Cell In: Stationary Phase, Ri

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000184
- InterPro:   IPR016474
- InterPro:   IPR010827 [H]

Pfam domain/function: PF01103 Bac_surface_Ag; PF07244 Surf_Ag_VNR [H]

EC number: NA

Molecular weight: Translated: 86883; Mature: 86751

Theoretical pI: Translated: 9.33; Mature: 9.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIRSISKLTILLLTIFYYHISLADSVIRKITIEGNHRVERSTIESYLKLKVGETYNNSK
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCHHHHHHHHHEEEECCCCCCCH
EDEVIKRLYATSLFRNINMHITNDGNLIVNVTETPFISSVVFSGNSKIKTNMLAKEIYTM
HHHHHHHHHHHHHHHCCEEEEECCCCEEEEEECCCCEEEEEECCCCCEEHHHHHHHHHHC
SGESLSQAKIELDVKKILEIYKRSGRFATTVTPKIENLENNRVKVIFDIAEGPKTGINYI
CCCCCCHHEEEECHHHHHHHHHHCCCEEEEECCHHHCCCCCCEEEEEEECCCCCCCCEEE
YFSGNENYSDSELKSIVLTKESRWFRFLESNDTYDPDRMEYDKELLRDFYQSVGFADFRV
EECCCCCCCHHHHHEEEEECCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEE
ISASAELNNTKEYFTLTYSIEEGEKYSFGNITIDNKLTNIDITPLNKIVNIKQGKVFNMK
EEECCCCCCCCEEEEEEEEECCCCEEECCCEEECCEEEEEECCCCHHHEECCCCCEECHH
KVDDIAEKIGEYFTANGYPAVNVYPNIMKNANHTADIKFIIEKADKVYINKINIINNLKT
HHHHHHHHHHHHEECCCCEEEEECHHHHCCCCCCCEEEEEEECCCEEEEEEEEEECCCCC
EDPVIRREFKIEEGDIINRSYIEKGERNLRNLDYFEKVAISLAPTKAKDKYDVNVEVDEK
CCCHHHHEEECCCCCCCCHHHHHHHHHHCCCCCHHHHHEEEECCCCCCCCEEEEEEECCC
STSSIGFDLGYNTAGGLFGRFSFLERNLVGTGKLLNAGVQVSKNTTSYYGGITAPHFLDR
CCCCCEEECCCCCCCCHHHHHHHHHHCCCCCCHHECCCEEEECCCCEECCCCCCCHHHCC
DLSLGVNTFRNYTGRGASVLNTTDQSYKLHSIGVKTSLGYEIKEDLGHEIDYLIKRDILS
CHHCCHHHHHCCCCCCCEEEECCCCCEEEEEECCCCCCCCHHHHHCCCHHHHHHHHHHHC
APTPSSSIFLKEQMGRFITSAIGHTITYDQTDNKIVPKNGYLVSGTQEFAGVGGNNKYIK
CCCCCCCEEEHHHHHHHHHHHHCCEEEECCCCCEEECCCCEEEECCHHHHCCCCCCCEEE
HEVDGKYYKSFIHNKLTLKLSASGGNITGLGGKIIRISDRFNLGDYSLRGFANGGVGPRE
EECCHHHHHHHHCCEEEEEEECCCCCEEECCCEEEEEECCCCCCCEEEEEECCCCCCCHH
KVTNEGLGGERYYKFSTELNFPTPIPEEFNLTGTVFMDLGSVGGVGLNKKQYQTPNGFYN
HHCCCCCCCCEEEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCC
DTSLRASIGFGFIWVTRFAPIRMDWGFPIKKKKYDDTQHFHLRFSTHL
CCCEEEECCCCEEEEEECCEEEECCCCCCCCCCCCCCEEEEEEEEECC
>Mature Secondary Structure 
TIRSISKLTILLLTIFYYHISLADSVIRKITIEGNHRVERSTIESYLKLKVGETYNNSK
CCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCHHHHHHHHHEEEECCCCCCCH
EDEVIKRLYATSLFRNINMHITNDGNLIVNVTETPFISSVVFSGNSKIKTNMLAKEIYTM
HHHHHHHHHHHHHHHCCEEEEECCCCEEEEEECCCCEEEEEECCCCCEEHHHHHHHHHHC
SGESLSQAKIELDVKKILEIYKRSGRFATTVTPKIENLENNRVKVIFDIAEGPKTGINYI
CCCCCCHHEEEECHHHHHHHHHHCCCEEEEECCHHHCCCCCCEEEEEEECCCCCCCCEEE
YFSGNENYSDSELKSIVLTKESRWFRFLESNDTYDPDRMEYDKELLRDFYQSVGFADFRV
EECCCCCCCHHHHHEEEEECCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEE
ISASAELNNTKEYFTLTYSIEEGEKYSFGNITIDNKLTNIDITPLNKIVNIKQGKVFNMK
EEECCCCCCCCEEEEEEEEECCCCEEECCCEEECCEEEEEECCCCHHHEECCCCCEECHH
KVDDIAEKIGEYFTANGYPAVNVYPNIMKNANHTADIKFIIEKADKVYINKINIINNLKT
HHHHHHHHHHHHEECCCCEEEEECHHHHCCCCCCCEEEEEEECCCEEEEEEEEEECCCCC
EDPVIRREFKIEEGDIINRSYIEKGERNLRNLDYFEKVAISLAPTKAKDKYDVNVEVDEK
CCCHHHHEEECCCCCCCCHHHHHHHHHHCCCCCHHHHHEEEECCCCCCCCEEEEEEECCC
STSSIGFDLGYNTAGGLFGRFSFLERNLVGTGKLLNAGVQVSKNTTSYYGGITAPHFLDR
CCCCCEEECCCCCCCCHHHHHHHHHHCCCCCCHHECCCEEEECCCCEECCCCCCCHHHCC
DLSLGVNTFRNYTGRGASVLNTTDQSYKLHSIGVKTSLGYEIKEDLGHEIDYLIKRDILS
CHHCCHHHHHCCCCCCCEEEECCCCCEEEEEECCCCCCCCHHHHHCCCHHHHHHHHHHHC
APTPSSSIFLKEQMGRFITSAIGHTITYDQTDNKIVPKNGYLVSGTQEFAGVGGNNKYIK
CCCCCCCEEEHHHHHHHHHHHHCCEEEECCCCCEEECCCCEEEECCHHHHCCCCCCCEEE
HEVDGKYYKSFIHNKLTLKLSASGGNITGLGGKIIRISDRFNLGDYSLRGFANGGVGPRE
EECCHHHHHHHHCCEEEEEEECCCCCEEECCCEEEEEECCCCCCCEEEEEECCCCCCCHH
KVTNEGLGGERYYKFSTELNFPTPIPEEFNLTGTVFMDLGSVGGVGLNKKQYQTPNGFYN
HHCCCCCCCCEEEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCC
DTSLRASIGFGFIWVTRFAPIRMDWGFPIKKKKYDDTQHFHLRFSTHL
CCCEEEECCCCEEEEEECCEEEECCCCCCCCCCCCCCEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10710307 [H]