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The map label for this gene is yhcM [H]

Identifier: 158425641

GI number: 158425641

Start: 4585046

End: 4586188

Strand: Reverse

Name: yhcM [H]

Synonym: AZC_4017

Alternate gene names: 158425641

Gene position: 4586188-4585046 (Counterclockwise)

Preceding gene: 158425644

Following gene: 158425640

Centisome position: 85.41

GC content: 67.28

Gene sequence:

>1143_bases
ATGGTGGCCGCCGGGGAGATCCGCGAGGACGCCGCCCAGGCCGCTGTGGTGGATGCGCTCGCCCGCCTTGAACAGGCCCT
GAAGGACAGTTCGCTCGCCCGCAAGGGTTCGGCGCTCGGCTGGCTGTTCCACCGGCGCACCGTCACCGCGCCGCCCAAGG
GCCTCTACATCTATGGCCGGGTCGGGCGCGGCAAGACCATGCTCATGGACCTGTTCTTCGAGAGCATCAGCTTCGTCGCC
CGCCGCCGCTCGCACTTCCACGAGTTCATGGCCGACGTGCATGACCGCATCTACAAGGAGCGCGAGGGCCAGAAGAAGGG
CGAGCGCAAGACCGGCGATCCCATCGTGCCGGTGGCCGCCTCCATCGCCGCCGAGGCGAAGGTGCTGTGCTTCGACGAGT
TTCACGTCACCGACATCGCGGACGCCATGATCCTCGGCCGCCTGTTCCAGCACCTCTTCTCGGCCGGCGTGGTGCTGGTG
GCGACCTCCAACGTGGCGCCGAAGGACCTCTATGCCGGAGGCCTCAACCGGGCGCTGTTCCTGCCCTTCATCGACATGAT
CGTCCAGAAGACGGACGTGCTGGCGCTGGATGCCTCCACAGACTACCGGATGGAGAAGCTGGACGGTATCAAGGTCTGGC
ATGCCCCGCTGGGAACGGAGGCGGACGCGGCGGTGGAGGCGGCCTGGCTGCACCTGGCCGGTCCCGACGGCGGCGCGCCC
TACGAACTGCACATGAAGGGTCGCACCCTCGCGGTGCCCCGTGCCGGCGGCGGGGCGGCCCGCTTCACCTTCGCGGACCT
GTGCGAGCATCCGCTCGGCGCGTCCGACTATCTGCGGCTGGCGCACACCTTCCACACCCTTGTTGTGGAACACATTCCCG
TGCTCAATCCGGAGAAGCGGAACGAGGCCAAGCGCTTCATCACGCTGATCGACGCCCTCTACGACAACAACGTGAAGCTG
GTCGCCTCGGCGGACGCCGAGCCAGAGGGGCTTTATGTGGGGGCTGACGGAACGGAAGGGTTCGAGTTCGCCCGCACGGT
TTCGCGCCTGCACGAGATGCGCTCCAGCGACTATCTCGCGCAGCCGCACGGGCGGGGCGACTCCATTGCGAGCGGAGATG
CTACCGGATTGGTGGAAACCTGA

Upstream 100 bases:

>100_bases
CGCCAACCGGGCGAAAGCCGGGGCCTCAGGCCGGCGCGCGGAGGCCGGAGGTTCCATGGGCATCGAGAGCGGCACCCGCA
TTGCCACCCGTTACAAGGCC

Downstream 100 bases:

>100_bases
CCCTCGGTCCGCCGAAACCGTGGTTGGGCGCCTAAAGGGGTAGATGCGGCGTCTTGAACCCTTGTGCGGATGGGAGTAGT
CAAGCCCCGCTCGGCCTAAG

Product: AFG1-like ATPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 380; Mature: 380

Protein sequence:

>380_residues
MVAAGEIREDAAQAAVVDALARLEQALKDSSLARKGSALGWLFHRRTVTAPPKGLYIYGRVGRGKTMLMDLFFESISFVA
RRRSHFHEFMADVHDRIYKEREGQKKGERKTGDPIVPVAASIAAEAKVLCFDEFHVTDIADAMILGRLFQHLFSAGVVLV
ATSNVAPKDLYAGGLNRALFLPFIDMIVQKTDVLALDASTDYRMEKLDGIKVWHAPLGTEADAAVEAAWLHLAGPDGGAP
YELHMKGRTLAVPRAGGGAARFTFADLCEHPLGASDYLRLAHTFHTLVVEHIPVLNPEKRNEAKRFITLIDALYDNNVKL
VASADAEPEGLYVGADGTEGFEFARTVSRLHEMRSSDYLAQPHGRGDSIASGDATGLVET

Sequences:

>Translated_380_residues
MVAAGEIREDAAQAAVVDALARLEQALKDSSLARKGSALGWLFHRRTVTAPPKGLYIYGRVGRGKTMLMDLFFESISFVA
RRRSHFHEFMADVHDRIYKEREGQKKGERKTGDPIVPVAASIAAEAKVLCFDEFHVTDIADAMILGRLFQHLFSAGVVLV
ATSNVAPKDLYAGGLNRALFLPFIDMIVQKTDVLALDASTDYRMEKLDGIKVWHAPLGTEADAAVEAAWLHLAGPDGGAP
YELHMKGRTLAVPRAGGGAARFTFADLCEHPLGASDYLRLAHTFHTLVVEHIPVLNPEKRNEAKRFITLIDALYDNNVKL
VASADAEPEGLYVGADGTEGFEFARTVSRLHEMRSSDYLAQPHGRGDSIASGDATGLVET
>Mature_380_residues
MVAAGEIREDAAQAAVVDALARLEQALKDSSLARKGSALGWLFHRRTVTAPPKGLYIYGRVGRGKTMLMDLFFESISFVA
RRRSHFHEFMADVHDRIYKEREGQKKGERKTGDPIVPVAASIAAEAKVLCFDEFHVTDIADAMILGRLFQHLFSAGVVLV
ATSNVAPKDLYAGGLNRALFLPFIDMIVQKTDVLALDASTDYRMEKLDGIKVWHAPLGTEADAAVEAAWLHLAGPDGGAP
YELHMKGRTLAVPRAGGGAARFTFADLCEHPLGASDYLRLAHTFHTLVVEHIPVLNPEKRNEAKRFITLIDALYDNNVKL
VASADAEPEGLYVGADGTEGFEFARTVSRLHEMRSSDYLAQPHGRGDSIASGDATGLVET

Specific function: Unknown

COG id: COG1485

COG function: function code R; Predicted ATPase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AFG1 ATPase family [H]

Homologues:

Organism=Homo sapiens, GI21918872, Length=395, Percent_Identity=38.9873417721519, Blast_Score=276, Evalue=3e-74,
Organism=Escherichia coli, GI1789627, Length=371, Percent_Identity=39.622641509434, Blast_Score=246, Evalue=2e-66,
Organism=Caenorhabditis elegans, GI17505769, Length=407, Percent_Identity=36.3636363636364, Blast_Score=250, Evalue=1e-66,
Organism=Saccharomyces cerevisiae, GI6320783, Length=469, Percent_Identity=31.9829424307036, Blast_Score=209, Evalue=5e-55,
Organism=Drosophila melanogaster, GI20129913, Length=348, Percent_Identity=39.6551724137931, Blast_Score=243, Evalue=2e-64,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005654 [H]

Pfam domain/function: PF03969 AFG1_ATPase [H]

EC number: NA

Molecular weight: Translated: 41438; Mature: 41438

Theoretical pI: Translated: 6.46; Mature: 6.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVAAGEIREDAAQAAVVDALARLEQALKDSSLARKGSALGWLFHRRTVTAPPKGLYIYGR
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHEEHEECCEECCCCCCEEEEEE
VGRGKTMLMDLFFESISFVARRRSHFHEFMADVHDRIYKEREGQKKGERKTGDPIVPVAA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCCCCCHHHHH
SIAAEAKVLCFDEFHVTDIADAMILGRLFQHLFSAGVVLVATSNVAPKDLYAGGLNRALF
HHHHCCEEEEEECCCHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHCCCCHHHH
LPFIDMIVQKTDVLALDASTDYRMEKLDGIKVWHAPLGTEADAAVEAAWLHLAGPDGGAP
HHHHHHHHHHCCEEEEECCCCCHHHHCCCEEEEECCCCCCCHHHHHEEEEEEECCCCCCC
YELHMKGRTLAVPRAGGGAARFTFADLCEHPLGASDYLRLAHTFHTLVVEHIPVLNPEKR
EEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHH
NEAKRFITLIDALYDNNVKLVASADAEPEGLYVGADGTEGFEFARTVSRLHEMRSSDYLA
HHHHHHHHHHHHHHCCCEEEEEECCCCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCCC
QPHGRGDSIASGDATGLVET
CCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MVAAGEIREDAAQAAVVDALARLEQALKDSSLARKGSALGWLFHRRTVTAPPKGLYIYGR
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHEEHEECCEECCCCCCEEEEEE
VGRGKTMLMDLFFESISFVARRRSHFHEFMADVHDRIYKEREGQKKGERKTGDPIVPVAA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCCCCCHHHHH
SIAAEAKVLCFDEFHVTDIADAMILGRLFQHLFSAGVVLVATSNVAPKDLYAGGLNRALF
HHHHCCEEEEEECCCHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHCCCCHHHH
LPFIDMIVQKTDVLALDASTDYRMEKLDGIKVWHAPLGTEADAAVEAAWLHLAGPDGGAP
HHHHHHHHHHCCEEEEECCCCCHHHHCCCEEEEECCCCCCCHHHHHEEEEEEECCCCCCC
YELHMKGRTLAVPRAGGGAARFTFADLCEHPLGASDYLRLAHTFHTLVVEHIPVLNPEKR
EEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHH
NEAKRFITLIDALYDNNVKLVASADAEPEGLYVGADGTEGFEFARTVSRLHEMRSSDYLA
HHHHHHHHHHHHHHCCCEEEEEECCCCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCCC
QPHGRGDSIASGDATGLVET
CCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]