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The map label for this gene is yddU [C]

Identifier: 158425526

GI number: 158425526

Start: 4454530

End: 4455876

Strand: Direct

Name: yddU [C]

Synonym: AZC_3902

Alternate gene names: 158425526

Gene position: 4454530-4455876 (Clockwise)

Preceding gene: 158425525

Following gene: 158425532

Centisome position: 82.96

GC content: 63.92

Gene sequence:

>1347_bases
ATGAAACGCAATTCCGTCTTTGACTGGTCTCCGGAACAGCGCCGGCACAGACGGGTTCGCTCCCTCCTGCTTTTCGGAAG
TGGCGTGTTCGTGGCGCTGGGCGGCGGTTGGAGCGTCTTTTACGGGCTGCACGGGCACTGGGTCATGATGGCGGTCCATC
TGGCGCTGAGTGCCCTCGCCATCCCCGCGCTTGCCCTGATATTCCTCGATCATGCCCGCGCGGCCGCCATCTTCATCGCC
CACGCGCTTCTGCCCTTCGTCACGTGGCTTTGCCTGATCGATGCCCCGCTCGGGGACATTCAGAGATCAACGCATCTTTT
CCTGCTGCCCATTGGGGTGGGGATCTTCTTCATCTTCTCGCAGGAGCGGGCCTATCTGAGATATTTCCTCCCCTGCCTCT
ACTTCGTGCTGTTCATCGTCTTCCAGTGTTCGGATATGGGCGTCAGCCATCCCGACCTGATGGCGCCCGAGCGCGTTCGA
TACGTCGGCATGTGGGTCAACGCCATAACGGCGGTGATCGCGCTCGGTGTCGTGCTGACCTTGATGCAGGTGGACATGGC
CTCCTACCACCAACTCGAAGGCGAGATGCGGCGCGCCCTCGCCCGGGGGGACTTCCGCCTGCATTACCAGCCGCAAGTCG
ACCCGTCCCGCCGGATCCTCGGGGCGGAGGCGCTCCTGAGGTGGTTCAATCCCGACCATGGCATCATTCCACCCGCAAAG
TTCATCACGCTGGCCGAGGAAACGGGCCTCATCGTGCCTCTGGGCGACTGGGTCCTCAGAACCGCCTGCGCGCAACTGGC
GCTGTGGGCCGAGATCCCCGCGACCCGCGACCTCACGATCTCGGTCAACGTCAGCGCGTCGCAGTTCCGCCAGCCCGATT
TCGTGCCGCGGGTGAGAGAGATCCTCGCCCACACCGGAGCCGATCCCTCCCGGCTCAAGCTCGAGCTGACCGAAAGCCTC
TTCGTGCGCGACCCGGACGTGGCCGCCGAAAAGATGAGCGCCCTGCGGGACGTCGGCCTGCGCTGGTCCCTGGACGATTT
CGGCACCGGCTACTCCTCGCTGCACATGCTGAGGAACCTGCCGGTGGACGAGATCAAGATCGACAAGACCTTCGTCAGCA
GGATGGCGTCCGAGGAACAGGACCGCGCCATTGTCCGCCTGCTGATCGACATGTGCAGCACGCTGGGCCTGTTTCTCGTG
GCTGAGGGCGTCGAGACCGAGGAGCAATATCGGCTCCTTCAGGCATGGGGCTGCGACGGCTTCCAGGGCTATCTCTTCGG
CAAGGCCATGCCCGTCTTCCAGTTCAGCAGGCTCGCAGAGGCGGCATCGGCCGCCTCCACGAACTAG

Upstream 100 bases:

>100_bases
GGACGAATAGAATCCGGATCACATCTGCTCCCCCTCCAGCCGTGGCCAAGGCGCCACCTGCCCGCACCTGGCGGAAATTC
CCCTGCAAACGGCCGAGACC

Downstream 100 bases:

>100_bases
AGTCGGCGCCGCCTCAAGCCGTCACGCCGCTTCGAGCGCCAGCGCGATGCCCTGGCCGCCGCCGATGCACAGGGTGACCA
CGCCGCGCTTCACGCCGTCA

Product: cylclic diguanylate phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 448; Mature: 448

Protein sequence:

>448_residues
MKRNSVFDWSPEQRRHRRVRSLLLFGSGVFVALGGGWSVFYGLHGHWVMMAVHLALSALAIPALALIFLDHARAAAIFIA
HALLPFVTWLCLIDAPLGDIQRSTHLFLLPIGVGIFFIFSQERAYLRYFLPCLYFVLFIVFQCSDMGVSHPDLMAPERVR
YVGMWVNAITAVIALGVVLTLMQVDMASYHQLEGEMRRALARGDFRLHYQPQVDPSRRILGAEALLRWFNPDHGIIPPAK
FITLAEETGLIVPLGDWVLRTACAQLALWAEIPATRDLTISVNVSASQFRQPDFVPRVREILAHTGADPSRLKLELTESL
FVRDPDVAAEKMSALRDVGLRWSLDDFGTGYSSLHMLRNLPVDEIKIDKTFVSRMASEEQDRAIVRLLIDMCSTLGLFLV
AEGVETEEQYRLLQAWGCDGFQGYLFGKAMPVFQFSRLAEAASAASTN

Sequences:

>Translated_448_residues
MKRNSVFDWSPEQRRHRRVRSLLLFGSGVFVALGGGWSVFYGLHGHWVMMAVHLALSALAIPALALIFLDHARAAAIFIA
HALLPFVTWLCLIDAPLGDIQRSTHLFLLPIGVGIFFIFSQERAYLRYFLPCLYFVLFIVFQCSDMGVSHPDLMAPERVR
YVGMWVNAITAVIALGVVLTLMQVDMASYHQLEGEMRRALARGDFRLHYQPQVDPSRRILGAEALLRWFNPDHGIIPPAK
FITLAEETGLIVPLGDWVLRTACAQLALWAEIPATRDLTISVNVSASQFRQPDFVPRVREILAHTGADPSRLKLELTESL
FVRDPDVAAEKMSALRDVGLRWSLDDFGTGYSSLHMLRNLPVDEIKIDKTFVSRMASEEQDRAIVRLLIDMCSTLGLFLV
AEGVETEEQYRLLQAWGCDGFQGYLFGKAMPVFQFSRLAEAASAASTN
>Mature_448_residues
MKRNSVFDWSPEQRRHRRVRSLLLFGSGVFVALGGGWSVFYGLHGHWVMMAVHLALSALAIPALALIFLDHARAAAIFIA
HALLPFVTWLCLIDAPLGDIQRSTHLFLLPIGVGIFFIFSQERAYLRYFLPCLYFVLFIVFQCSDMGVSHPDLMAPERVR
YVGMWVNAITAVIALGVVLTLMQVDMASYHQLEGEMRRALARGDFRLHYQPQVDPSRRILGAEALLRWFNPDHGIIPPAK
FITLAEETGLIVPLGDWVLRTACAQLALWAEIPATRDLTISVNVSASQFRQPDFVPRVREILAHTGADPSRLKLELTESL
FVRDPDVAAEKMSALRDVGLRWSLDDFGTGYSSLHMLRNLPVDEIKIDKTFVSRMASEEQDRAIVRLLIDMCSTLGLFLV
AEGVETEEQYRLLQAWGCDGFQGYLFGKAMPVFQFSRLAEAASAASTN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI87081921, Length=241, Percent_Identity=40.6639004149378, Blast_Score=179, Evalue=4e-46,
Organism=Escherichia coli, GI1787541, Length=249, Percent_Identity=35.7429718875502, Blast_Score=170, Evalue=1e-43,
Organism=Escherichia coli, GI1790496, Length=245, Percent_Identity=37.5510204081633, Blast_Score=164, Evalue=1e-41,
Organism=Escherichia coli, GI1787055, Length=238, Percent_Identity=37.3949579831933, Blast_Score=150, Evalue=2e-37,
Organism=Escherichia coli, GI87081743, Length=284, Percent_Identity=34.8591549295775, Blast_Score=149, Evalue=3e-37,
Organism=Escherichia coli, GI226510982, Length=254, Percent_Identity=38.1889763779528, Blast_Score=146, Evalue=2e-36,
Organism=Escherichia coli, GI87081845, Length=248, Percent_Identity=35.0806451612903, Blast_Score=135, Evalue=5e-33,
Organism=Escherichia coli, GI1786507, Length=238, Percent_Identity=35.7142857142857, Blast_Score=131, Evalue=8e-32,
Organism=Escherichia coli, GI87081980, Length=245, Percent_Identity=35.1020408163265, Blast_Score=130, Evalue=1e-31,
Organism=Escherichia coli, GI1788502, Length=265, Percent_Identity=31.3207547169811, Blast_Score=125, Evalue=8e-30,
Organism=Escherichia coli, GI1788849, Length=300, Percent_Identity=29.6666666666667, Blast_Score=112, Evalue=6e-26,
Organism=Escherichia coli, GI87082096, Length=241, Percent_Identity=30.7053941908714, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI1787410, Length=223, Percent_Identity=28.6995515695067, Blast_Score=80, Evalue=3e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 50266; Mature: 50266

Theoretical pI: Translated: 6.84; Mature: 6.84

Prosite motif: PS50883 EAL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRNSVFDWSPEQRRHRRVRSLLLFGSGVFVALGGGWSVFYGLHGHWVMMAVHLALSALA
CCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCEEECCCCHHHHHHHHHHHHHHHH
IPALALIFLDHARAAAIFIAHALLPFVTWLCLIDAPLGDIQRSTHLFLLPIGVGIFFIFS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCEEEEEEHHHHEEEEEC
QERAYLRYFLPCLYFVLFIVFQCSDMGVSHPDLMAPERVRYVGMWVNAITAVIALGVVLT
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
LMQVDMASYHQLEGEMRRALARGDFRLHYQPQVDPSRRILGAEALLRWFNPDHGIIPPAK
HHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCHH
FITLAEETGLIVPLGDWVLRTACAQLALWAEIPATRDLTISVNVSASQFRQPDFVPRVRE
HEEEECCCCEEEECHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCHHHCCCCCCHHHHHH
ILAHTGADPSRLKLELTESLFVRDPDVAAEKMSALRDVGLRWSLDDFGTGYSSLHMLRNL
HHHHCCCCHHHEEEEEHHHHHCCCCCHHHHHHHHHHHCCCEECCHHHCCCHHHHHHHHCC
PVDEIKIDKTFVSRMASEEQDRAIVRLLIDMCSTLGLFLVAEGVETEEQYRLLQAWGCDG
CCCCEEHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCC
FQGYLFGKAMPVFQFSRLAEAASAASTN
CCHHHHHCCCHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MKRNSVFDWSPEQRRHRRVRSLLLFGSGVFVALGGGWSVFYGLHGHWVMMAVHLALSALA
CCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCEEECCCCHHHHHHHHHHHHHHHH
IPALALIFLDHARAAAIFIAHALLPFVTWLCLIDAPLGDIQRSTHLFLLPIGVGIFFIFS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCEEEEEEHHHHEEEEEC
QERAYLRYFLPCLYFVLFIVFQCSDMGVSHPDLMAPERVRYVGMWVNAITAVIALGVVLT
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
LMQVDMASYHQLEGEMRRALARGDFRLHYQPQVDPSRRILGAEALLRWFNPDHGIIPPAK
HHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCHH
FITLAEETGLIVPLGDWVLRTACAQLALWAEIPATRDLTISVNVSASQFRQPDFVPRVRE
HEEEECCCCEEEECHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCHHHCCCCCCHHHHHH
ILAHTGADPSRLKLELTESLFVRDPDVAAEKMSALRDVGLRWSLDDFGTGYSSLHMLRNL
HHHHCCCCHHHEEEEEHHHHHCCCCCHHHHHHHHHHHCCCEECCHHHCCCHHHHHHHHCC
PVDEIKIDKTFVSRMASEEQDRAIVRLLIDMCSTLGLFLVAEGVETEEQYRLLQAWGCDG
CCCCEEHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCC
FQGYLFGKAMPVFQFSRLAEAASAASTN
CCHHHHHCCCHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]