| Definition | Azorhizobium caulinodans ORS 571, complete genome. |
|---|---|
| Accession | NC_009937 |
| Length | 5,369,772 |
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The map label for this gene is linX [H]
Identifier: 158425522
GI number: 158425522
Start: 4450461
End: 4451252
Strand: Reverse
Name: linX [H]
Synonym: AZC_3898
Alternate gene names: 158425522
Gene position: 4451252-4450461 (Counterclockwise)
Preceding gene: 158425523
Following gene: 158425521
Centisome position: 82.89
GC content: 69.19
Gene sequence:
>792_bases ATGGATCTCAAGCTCAAGGATCGCGTGGCGATCATCACCGGCCCCGCCAAGGGCATGGGCGCCGCCATCACCCGCGCGTT CGCCGAGGAGGGCTGCAAGCTGGTGCTGATCGGCCGCGACACCGCCGCCATCGCCCCCATCGCCGACGAGGTGCGCGCCC GGCGCGCCGAGGCCATCGTGCTGCCGTGCGACCTTACCGATGCCGCCGCCTGCGAGACGGCGACCGCGCGGGCGCTGGAC GCCTTCGGCACCGTGGACATCCTCGTCAATGTGGCCGGCGGCTCGGGCCCCATCGGCAAGACGGGTGTGGAGACGACGCC GGAGGAGTTCGACGAGATCGTCACGCTCAACATGAACGGCTGCTTCCACACCATGCGCGCCGTCCTGCCGACCATGATTG CCCGGCGCTACGGCAAGATCGTCAATGTGGGCGGCACCTTCGGCATGCGTGGGCGGGCGGGCCGCATGGCCTACTCGGCC TCCAAATGGGGCCTGCGCGGCATCACCAAGAGCTTCGCACTGGAGGTCGGGCCGCACAACATCAACGTGAACTGCGTCGA GCCCGGCATGGTCGACGGTCCGCGCTTCCGCGACAAGGTCTGCGCCGACATGGCCAGGAAGCTCGACATCACGCTGGAGG AGGCGATGGCCCGCCACGCGGCCGACTATGCGCTGCGCCGCGTGACCACCGACGAGGACGTGGCCAATGCCTGCCTGTTC CTCGCCAGCGACGTTTCCCGCCAGCTCACCGGCATCGACATGCCGGTCGATGGCGGCTGGGCCATGCTCTGA
Upstream 100 bases:
>100_bases GCCCCCGGTCGCCGACCTGCCGAAGAAACTGTTCTGAGCACCGGCAAGCCTTCGCGCCGCTCCTCAAGGGAGCGGCGCCC AACAAGAACGGACATCCAAA
Downstream 100 bases:
>100_bases GGAGGGCGACATGAGCGAACCTGCGGATCTGGTCATCCACGGCGGTCGGATCGTCTCGCCGGAGACGGTCCTGGAGGCCT CCATTGCCGTGCGCGGCGGC
Product: short-chain dehydrogenase
Products: 3-oxoacyl-[acyl-carrier protein]; NADPH; H+
Alternate protein names: 2,5-DDOL dehydrogenase [H]
Number of amino acids: Translated: 263; Mature: 263
Protein sequence:
>263_residues MDLKLKDRVAIITGPAKGMGAAITRAFAEEGCKLVLIGRDTAAIAPIADEVRARRAEAIVLPCDLTDAAACETATARALD AFGTVDILVNVAGGSGPIGKTGVETTPEEFDEIVTLNMNGCFHTMRAVLPTMIARRYGKIVNVGGTFGMRGRAGRMAYSA SKWGLRGITKSFALEVGPHNINVNCVEPGMVDGPRFRDKVCADMARKLDITLEEAMARHAADYALRRVTTDEDVANACLF LASDVSRQLTGIDMPVDGGWAML
Sequences:
>Translated_263_residues MDLKLKDRVAIITGPAKGMGAAITRAFAEEGCKLVLIGRDTAAIAPIADEVRARRAEAIVLPCDLTDAAACETATARALD AFGTVDILVNVAGGSGPIGKTGVETTPEEFDEIVTLNMNGCFHTMRAVLPTMIARRYGKIVNVGGTFGMRGRAGRMAYSA SKWGLRGITKSFALEVGPHNINVNCVEPGMVDGPRFRDKVCADMARKLDITLEEAMARHAADYALRRVTTDEDVANACLF LASDVSRQLTGIDMPVDGGWAML >Mature_263_residues MDLKLKDRVAIITGPAKGMGAAITRAFAEEGCKLVLIGRDTAAIAPIADEVRARRAEAIVLPCDLTDAAACETATARALD AFGTVDILVNVAGGSGPIGKTGVETTPEEFDEIVTLNMNGCFHTMRAVLPTMIARRYGKIVNVGGTFGMRGRAGRMAYSA SKWGLRGITKSFALEVGPHNINVNCVEPGMVDGPRFRDKVCADMARKLDITLEEAMARHAADYALRRVTTDEDVANACLF LASDVSRQLTGIDMPVDGGWAML
Specific function: Catalyzes the degradation of 2,5-dichloro-2,5- cyclohexadiene-1,4-diol (2,5-DDOL) into 2,5-dichlorohydroquinone (2,5-DCHQ). LinX appears not to be involved in gamma-HCH degradation pathway [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI40254992, Length=259, Percent_Identity=30.5019305019305, Blast_Score=102, Evalue=4e-22, Organism=Homo sapiens, GI10190704, Length=260, Percent_Identity=28.4615384615385, Blast_Score=100, Evalue=2e-21, Organism=Homo sapiens, GI7705925, Length=269, Percent_Identity=33.0855018587361, Blast_Score=98, Evalue=9e-21, Organism=Homo sapiens, GI19923817, Length=264, Percent_Identity=26.5151515151515, Blast_Score=97, Evalue=2e-20, Organism=Homo sapiens, GI20149619, Length=208, Percent_Identity=32.6923076923077, Blast_Score=96, Evalue=5e-20, Organism=Homo sapiens, GI32483357, Length=255, Percent_Identity=28.6274509803922, Blast_Score=94, Evalue=1e-19, Organism=Homo sapiens, GI5031737, Length=256, Percent_Identity=28.125, Blast_Score=94, Evalue=2e-19, Organism=Homo sapiens, GI4504505, Length=195, Percent_Identity=30.7692307692308, Blast_Score=93, Evalue=2e-19, Organism=Homo sapiens, GI66933014, Length=264, Percent_Identity=30.3030303030303, Blast_Score=92, Evalue=4e-19, Organism=Homo sapiens, GI59889578, Length=235, Percent_Identity=27.6595744680851, Blast_Score=91, Evalue=9e-19, Organism=Homo sapiens, GI7706318, Length=212, Percent_Identity=28.7735849056604, Blast_Score=90, Evalue=2e-18, Organism=Homo sapiens, GI4503817, Length=196, Percent_Identity=29.5918367346939, Blast_Score=90, Evalue=3e-18, Organism=Homo sapiens, GI33667109, Length=188, Percent_Identity=30.8510638297872, Blast_Score=86, Evalue=3e-17, Organism=Homo sapiens, GI4758504, Length=220, Percent_Identity=30.4545454545455, Blast_Score=83, Evalue=3e-16, Organism=Homo sapiens, GI126723750, Length=257, Percent_Identity=26.0700389105058, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI157739938, Length=196, Percent_Identity=29.5918367346939, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI15277342, Length=269, Percent_Identity=27.1375464684015, Blast_Score=76, Evalue=2e-14, Organism=Homo sapiens, GI126723191, Length=203, Percent_Identity=27.0935960591133, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI83715985, Length=187, Percent_Identity=31.0160427807487, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI109715829, Length=249, Percent_Identity=26.1044176706827, Blast_Score=69, Evalue=5e-12, Organism=Homo sapiens, GI7657478, Length=191, Percent_Identity=29.8429319371728, Blast_Score=65, Evalue=5e-11, Organism=Escherichia coli, GI1787335, Length=263, Percent_Identity=31.1787072243346, Blast_Score=120, Evalue=7e-29, Organism=Escherichia coli, GI87082100, Length=265, Percent_Identity=33.9622641509434, Blast_Score=117, Evalue=6e-28, Organism=Escherichia coli, GI1789208, Length=259, Percent_Identity=29.7297297297297, Blast_Score=99, Evalue=3e-22, Organism=Escherichia coli, GI87082160, Length=265, Percent_Identity=29.0566037735849, Blast_Score=93, Evalue=2e-20, Organism=Escherichia coli, GI1787905, Length=258, Percent_Identity=27.906976744186, Blast_Score=93, Evalue=2e-20, Organism=Escherichia coli, GI1787820, Length=238, Percent_Identity=28.1512605042017, Blast_Score=91, Evalue=9e-20, Organism=Escherichia coli, GI1786812, Length=271, Percent_Identity=30.2583025830258, Blast_Score=87, Evalue=1e-18, Organism=Escherichia coli, GI1789057, Length=264, Percent_Identity=28.030303030303, Blast_Score=86, Evalue=2e-18, Organism=Escherichia coli, GI1790717, Length=260, Percent_Identity=25.3846153846154, Blast_Score=79, Evalue=3e-16, Organism=Escherichia coli, GI1787526, Length=188, Percent_Identity=26.063829787234, Blast_Score=74, Evalue=9e-15, Organism=Escherichia coli, GI1788459, Length=259, Percent_Identity=26.2548262548263, Blast_Score=72, Evalue=4e-14, Organism=Escherichia coli, GI2367365, Length=261, Percent_Identity=27.5862068965517, Blast_Score=65, Evalue=3e-12, Organism=Escherichia coli, GI1789378, Length=258, Percent_Identity=23.6434108527132, Blast_Score=64, Evalue=1e-11, Organism=Caenorhabditis elegans, GI25147288, Length=266, Percent_Identity=30.4511278195489, Blast_Score=112, Evalue=1e-25, Organism=Caenorhabditis elegans, GI71994600, Length=261, Percent_Identity=30.2681992337165, Blast_Score=101, Evalue=4e-22, Organism=Caenorhabditis elegans, GI17562910, Length=270, Percent_Identity=30.3703703703704, Blast_Score=101, Evalue=4e-22, Organism=Caenorhabditis elegans, GI71994604, Length=260, Percent_Identity=30.3846153846154, Blast_Score=100, Evalue=1e-21, Organism=Caenorhabditis elegans, GI17555706, Length=266, Percent_Identity=30.0751879699248, Blast_Score=97, Evalue=1e-20, Organism=Caenorhabditis elegans, GI17560332, Length=277, Percent_Identity=29.6028880866426, Blast_Score=92, Evalue=4e-19, Organism=Caenorhabditis elegans, GI17551412, Length=273, Percent_Identity=27.4725274725275, Blast_Score=91, Evalue=5e-19, Organism=Caenorhabditis elegans, GI17562904, Length=269, Percent_Identity=26.3940520446097, Blast_Score=91, Evalue=6e-19, Organism=Caenorhabditis elegans, GI17544670, Length=268, Percent_Identity=31.3432835820896, Blast_Score=88, Evalue=4e-18, Organism=Caenorhabditis elegans, GI17560676, Length=255, Percent_Identity=26.2745098039216, Blast_Score=85, Evalue=3e-17, Organism=Caenorhabditis elegans, GI17538480, Length=276, Percent_Identity=25.7246376811594, Blast_Score=85, Evalue=3e-17, Organism=Caenorhabditis elegans, GI17559104, Length=269, Percent_Identity=26.7657992565056, Blast_Score=84, Evalue=6e-17, Organism=Caenorhabditis elegans, GI115534694, Length=263, Percent_Identity=26.9961977186312, Blast_Score=83, Evalue=2e-16, Organism=Caenorhabditis elegans, GI17568967, Length=197, Percent_Identity=28.4263959390863, Blast_Score=82, Evalue=3e-16, Organism=Caenorhabditis elegans, GI72000259, Length=265, Percent_Identity=26.0377358490566, Blast_Score=81, Evalue=7e-16, Organism=Caenorhabditis elegans, GI17538486, Length=197, Percent_Identity=28.9340101522843, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI193204405, Length=204, Percent_Identity=30.8823529411765, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI17508895, Length=172, Percent_Identity=26.7441860465116, Blast_Score=77, Evalue=1e-14, Organism=Caenorhabditis elegans, GI71997099, Length=252, Percent_Identity=26.5873015873016, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI17560220, Length=267, Percent_Identity=26.9662921348315, Blast_Score=75, Evalue=3e-14, Organism=Caenorhabditis elegans, GI17562906, Length=275, Percent_Identity=28, Blast_Score=75, Evalue=4e-14, Organism=Caenorhabditis elegans, GI17531453, Length=268, Percent_Identity=27.2388059701493, Blast_Score=74, Evalue=5e-14, Organism=Caenorhabditis elegans, GI17562908, Length=194, Percent_Identity=28.8659793814433, Blast_Score=74, Evalue=5e-14, Organism=Caenorhabditis elegans, GI17565030, Length=199, Percent_Identity=30.1507537688442, Blast_Score=74, Evalue=8e-14, Organism=Caenorhabditis elegans, GI71982365, Length=197, Percent_Identity=27.9187817258883, Blast_Score=73, Evalue=1e-13, Organism=Caenorhabditis elegans, GI17560150, Length=271, Percent_Identity=24.7232472324723, Blast_Score=73, Evalue=1e-13, Organism=Caenorhabditis elegans, GI17561402, Length=257, Percent_Identity=23.7354085603113, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI193203117, Length=198, Percent_Identity=29.7979797979798, Blast_Score=71, Evalue=5e-13, Organism=Caenorhabditis elegans, GI17564282, Length=193, Percent_Identity=25.9067357512953, Blast_Score=70, Evalue=2e-12, Organism=Caenorhabditis elegans, GI193203115, Length=196, Percent_Identity=29.0816326530612, Blast_Score=69, Evalue=4e-12, Organism=Caenorhabditis elegans, GI17508651, Length=253, Percent_Identity=24.1106719367589, Blast_Score=67, Evalue=8e-12, Organism=Caenorhabditis elegans, GI17538182, Length=199, Percent_Identity=25.6281407035176, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17562990, Length=194, Percent_Identity=25.7731958762887, Blast_Score=65, Evalue=3e-11, Organism=Caenorhabditis elegans, GI17563726, Length=262, Percent_Identity=24.0458015267176, Blast_Score=65, Evalue=5e-11, Organism=Saccharomyces cerevisiae, GI6322861, Length=196, Percent_Identity=31.1224489795918, Blast_Score=99, Evalue=6e-22, Organism=Saccharomyces cerevisiae, GI6324126, Length=263, Percent_Identity=26.2357414448669, Blast_Score=96, Evalue=7e-21, Organism=Saccharomyces cerevisiae, GI6323882, Length=197, Percent_Identity=27.9187817258883, Blast_Score=67, Evalue=4e-12, Organism=Drosophila melanogaster, GI23397609, Length=261, Percent_Identity=34.4827586206897, Blast_Score=132, Evalue=3e-31, Organism=Drosophila melanogaster, GI24644339, Length=261, Percent_Identity=32.9501915708812, Blast_Score=120, Evalue=1e-27, Organism=Drosophila melanogaster, GI28571526, Length=264, Percent_Identity=33.3333333333333, Blast_Score=113, Evalue=1e-25, Organism=Drosophila melanogaster, GI21357041, Length=262, Percent_Identity=32.0610687022901, Blast_Score=113, Evalue=2e-25, Organism=Drosophila melanogaster, GI21358495, Length=193, Percent_Identity=30.5699481865285, Blast_Score=95, Evalue=4e-20, Organism=Drosophila melanogaster, GI24639444, Length=261, Percent_Identity=29.5019157088123, Blast_Score=94, Evalue=7e-20, Organism=Drosophila melanogaster, GI18859837, Length=196, Percent_Identity=31.1224489795918, Blast_Score=86, Evalue=2e-17, Organism=Drosophila melanogaster, GI21355319, Length=256, Percent_Identity=25.78125, Blast_Score=84, Evalue=1e-16, Organism=Drosophila melanogaster, GI24644337, Length=264, Percent_Identity=29.1666666666667, Blast_Score=81, Evalue=7e-16, Organism=Drosophila melanogaster, GI24643142, Length=260, Percent_Identity=28.0769230769231, Blast_Score=81, Evalue=8e-16, Organism=Drosophila melanogaster, GI24584748, Length=202, Percent_Identity=28.2178217821782, Blast_Score=79, Evalue=4e-15, Organism=Drosophila melanogaster, GI24584744, Length=191, Percent_Identity=28.7958115183246, Blast_Score=78, Evalue=5e-15, Organism=Drosophila melanogaster, GI28574402, Length=191, Percent_Identity=28.7958115183246, Blast_Score=78, Evalue=5e-15, Organism=Drosophila melanogaster, GI161076933, Length=202, Percent_Identity=28.2178217821782, Blast_Score=78, Evalue=5e-15, Organism=Drosophila melanogaster, GI17737361, Length=201, Percent_Identity=27.363184079602, Blast_Score=76, Evalue=3e-14, Organism=Drosophila melanogaster, GI21355631, Length=180, Percent_Identity=29.4444444444444, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI24640442, Length=195, Percent_Identity=27.6923076923077, Blast_Score=65, Evalue=4e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.1.1.100
Molecular weight: Translated: 28004; Mature: 28004
Theoretical pI: Translated: 6.28; Mature: 6.28
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.7 %Cys (Translated Protein) 4.6 %Met (Translated Protein) 7.2 %Cys+Met (Translated Protein) 2.7 %Cys (Mature Protein) 4.6 %Met (Mature Protein) 7.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDLKLKDRVAIITGPAKGMGAAITRAFAEEGCKLVLIGRDTAAIAPIADEVRARRAEAIV CCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEEECCCCEECCCHHHHHHHCCCEEE LPCDLTDAAACETATARALDAFGTVDILVNVAGGSGPIGKTGVETTPEEFDEIVTLNMNG EECCCCCHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCCCCCCCCHHHHHCEEEEECCH CFHTMRAVLPTMIARRYGKIVNVGGTFGMRGRAGRMAYSASKWGLRGITKSFALEVGPHN HHHHHHHHHHHHHHHHHCCEEECCCCCCCCCCCCCEEECCCCCCHHHHHHHHEEEECCCE INVNCVEPGMVDGPRFRDKVCADMARKLDITLEEAMARHAADYALRRVTTDEDVANACLF EEEEEECCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH LASDVSRQLTGIDMPVDGGWAML HHHHHHHHHHCCCCCCCCCEECC >Mature Secondary Structure MDLKLKDRVAIITGPAKGMGAAITRAFAEEGCKLVLIGRDTAAIAPIADEVRARRAEAIV CCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEEECCCCEECCCHHHHHHHCCCEEE LPCDLTDAAACETATARALDAFGTVDILVNVAGGSGPIGKTGVETTPEEFDEIVTLNMNG EECCCCCHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCCCCCCCCHHHHHCEEEEECCH CFHTMRAVLPTMIARRYGKIVNVGGTFGMRGRAGRMAYSASKWGLRGITKSFALEVGPHN HHHHHHHHHHHHHHHHHCCEEECCCCCCCCCCCCCEEECCCCCCHHHHHHHHEEEECCCE INVNCVEPGMVDGPRFRDKVCADMARKLDITLEEAMARHAADYALRRVTTDEDVANACLF EEEEEECCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH LASDVSRQLTGIDMPVDGGWAML HHHHHHHHHHCCCCCCCCCEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NADPH [C]
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: (3R)-3-hydroxyacyl-[acyl-carrier protein]; NADP+
Specific reaction: (3R)-3-hydroxyacyl-[acyl-carrier protein] + NADP+ = 3-oxoacyl-[acyl-carrier protein] + NADPH + H+
General reaction: Redox reaction [C]
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7515041; 12450824 [H]