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The map label for this gene is trbB [H]

Identifier: 158425482

GI number: 158425482

Start: 4410399

End: 4411370

Strand: Direct

Name: trbB [H]

Synonym: AZC_3858

Alternate gene names: 158425482

Gene position: 4410399-4411370 (Clockwise)

Preceding gene: 158425481

Following gene: 158425483

Centisome position: 82.13

GC content: 69.24

Gene sequence:

>972_bases
ATGGCGGCAGCACATCATCATCAGGGTTTTGCCCGCGGCGCGCGGATGCTGCGCACGGCGATGGGTCCGGCGATCGCCCG
GCACCTGGAAGACCCGTCCGTCGTCGAGGTGATGCTGAACCCGGATGGGCGGCTGTGGATCGACCGGCTCTCGGAAGGGT
TGGGCGACACAGGCGAGAAGCTGTCGCCCGCTGACGGTGAACGCATCGTTCGCCTCGTCGCGCACCATGTCGGCGCGGAG
GTTCACGCTGGCGCCCCGCGCGTTTCGGCCGAGCTGCCCGAGACAGAAGAACGGTTCGAGGGCCTGCTGCCGCCGGTCGT
CACGGCACCTACTTTCGCCATCCGCAAGCCCGCCGTCGCGGTCTTCACGCTCGAGGACTATGTCCGCGCCGGGATCATGT
CCGACGGACAAGCCGGCGCGCTGCGCCAGGGTGTGGCCTCTCGCGCCAACATTCTCGTCGCGGGCGGCACCTCGACGGGC
AAGACCACGCTGACCAACGCGCTGCTCGCCGAGGTCGCTAAGACAGAAGATCGGGTCGTTCTCATCGAGGATACGCGCGA
GCTGCAATGCGCGGCGCCGAACCTCGTCGCCCTGCGCACCAAGGACGGCGTCGCCTCGCTGTCCGAGCTCGTCCGCTCAG
CGCTGCGCCTGCGGCCCGACCGCATCCCCATTGGCGAGGTGCGCGGCGCAGAGGCGCTCGACCTGCTCAAGGCGTGGGGC
ACCGGCCATCCCGGCGGCATCGGCACCATCCATGCCGGCAGTGCTATCGGCGCGCTGCGCCGGATGGAGCAACTCATTCA
GGAAGCCGTCGTCACCGTCCCGCGCGCGCTGATCGCCGAGACCATCAATCTCGTGGCCGTGCTCTCGGGGCGCGGCAAGG
CGCGCCGGCTCACCGAACTCGCTCGTGTCGAGGGCCTCGGCCCTGATGGCGACTACCGCGTCACCCCTGTCCTTACCGGA
GATCCCTCATGA

Upstream 100 bases:

>100_bases
CGACGCGAAGGGAAACCTGTTGAACCGGCCCAATATCGGGCTCTTTTAATCATCCCCACCCGGGATGAGATCGTCATGAC
CCCGGCACGTCGGGGAGCAT

Downstream 100 bases:

>100_bases
TCCCATCGCTCCATCGCGCACGCAGCGCCGCCCGACTGGCCCTGTCTGCCACCTGTATCAGCCTGATGGCCACGGCCAGC
GCTCATGCCTCCGGTTCCTC

Product: conjugal transfer protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 323; Mature: 322

Protein sequence:

>323_residues
MAAAHHHQGFARGARMLRTAMGPAIARHLEDPSVVEVMLNPDGRLWIDRLSEGLGDTGEKLSPADGERIVRLVAHHVGAE
VHAGAPRVSAELPETEERFEGLLPPVVTAPTFAIRKPAVAVFTLEDYVRAGIMSDGQAGALRQGVASRANILVAGGTSTG
KTTLTNALLAEVAKTEDRVVLIEDTRELQCAAPNLVALRTKDGVASLSELVRSALRLRPDRIPIGEVRGAEALDLLKAWG
TGHPGGIGTIHAGSAIGALRRMEQLIQEAVVTVPRALIAETINLVAVLSGRGKARRLTELARVEGLGPDGDYRVTPVLTG
DPS

Sequences:

>Translated_323_residues
MAAAHHHQGFARGARMLRTAMGPAIARHLEDPSVVEVMLNPDGRLWIDRLSEGLGDTGEKLSPADGERIVRLVAHHVGAE
VHAGAPRVSAELPETEERFEGLLPPVVTAPTFAIRKPAVAVFTLEDYVRAGIMSDGQAGALRQGVASRANILVAGGTSTG
KTTLTNALLAEVAKTEDRVVLIEDTRELQCAAPNLVALRTKDGVASLSELVRSALRLRPDRIPIGEVRGAEALDLLKAWG
TGHPGGIGTIHAGSAIGALRRMEQLIQEAVVTVPRALIAETINLVAVLSGRGKARRLTELARVEGLGPDGDYRVTPVLTG
DPS
>Mature_322_residues
AAAHHHQGFARGARMLRTAMGPAIARHLEDPSVVEVMLNPDGRLWIDRLSEGLGDTGEKLSPADGERIVRLVAHHVGAEV
HAGAPRVSAELPETEERFEGLLPPVVTAPTFAIRKPAVAVFTLEDYVRAGIMSDGQAGALRQGVASRANILVAGGTSTGK
TTLTNALLAEVAKTEDRVVLIEDTRELQCAAPNLVALRTKDGVASLSELVRSALRLRPDRIPIGEVRGAEALDLLKAWGT
GHPGGIGTIHAGSAIGALRRMEQLIQEAVVTVPRALIAETINLVAVLSGRGKARRLTELARVEGLGPDGDYRVTPVLTGD
PS

Specific function: Unknown

COG id: COG4962

COG function: function code U; Flp pilus assembly protein, ATPase CpaF

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP E family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014149
- InterPro:   IPR001482 [H]

Pfam domain/function: PF00437 GSPII_E [H]

EC number: NA

Molecular weight: Translated: 34107; Mature: 33975

Theoretical pI: Translated: 7.04; Mature: 7.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAAAHHHQGFARGARMLRTAMGPAIARHLEDPSVVEVMLNPDGRLWIDRLSEGLGDTGEK
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHCCCCCCCC
LSPADGERIVRLVAHHVGAEVHAGAPRVSAELPETEERFEGLLPPVVTAPTFAIRKPAVA
CCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHCCCCCHHCCCCHHHCCCCEE
VFTLEDYVRAGIMSDGQAGALRQGVASRANILVAGGTSTGKTTLTNALLAEVAKTEDRVV
EEEHHHHHHHCCCCCCCHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHCCCCCEE
LIEDTRELQCAAPNLVALRTKDGVASLSELVRSALRLRPDRIPIGEVRGAEALDLLKAWG
EEECCCCCEECCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHC
TGHPGGIGTIHAGSAIGALRRMEQLIQEAVVTVPRALIAETINLVAVLSGRGKARRLTEL
CCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHH
ARVEGLGPDGDYRVTPVLTGDPS
HHHCCCCCCCCEEEEEEECCCCC
>Mature Secondary Structure 
AAAHHHQGFARGARMLRTAMGPAIARHLEDPSVVEVMLNPDGRLWIDRLSEGLGDTGEK
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHCCCCCCCC
LSPADGERIVRLVAHHVGAEVHAGAPRVSAELPETEERFEGLLPPVVTAPTFAIRKPAVA
CCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHCCCCCHHCCCCHHHCCCCEE
VFTLEDYVRAGIMSDGQAGALRQGVASRANILVAGGTSTGKTTLTNALLAEVAKTEDRVV
EEEHHHHHHHCCCCCCCHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHCCCCCEE
LIEDTRELQCAAPNLVALRTKDGVASLSELVRSALRLRPDRIPIGEVRGAEALDLLKAWG
EEECCCCCEECCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHC
TGHPGGIGTIHAGSAIGALRRMEQLIQEAVVTVPRALIAETINLVAVLSGRGKARRLTEL
CCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHH
ARVEGLGPDGDYRVTPVLTGDPS
HHHCCCCCCCCEEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]