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The map label for this gene is nodU

Identifier: 158425438

GI number: 158425438

Start: 4367692

End: 4369374

Strand: Reverse

Name: nodU

Synonym: AZC_3814

Alternate gene names: 158425438

Gene position: 4369374-4367692 (Counterclockwise)

Preceding gene: 158425439

Following gene: 158425437

Centisome position: 81.37

GC content: 55.02

Gene sequence:

>1683_bases
ATGAAGCGGTGCGGTTTGAAGTTGACCCACGACGGTGGAGTTGCGGTGTTGGATGGGCGCGATCTCGTGGCCTGCATCGA
GATGGAAAAGCTGACAAACAATGAGCGATATAGAAGAATTGAACATACCGACGAAATTGCTTTGGCTTTGCATCGATCCG
GCTTTCAACCATCAGACATCGACGAGTACATCATCGATGGATGGGATGGCGAGGTTGATGCATGGGTGGAGTTACTCGGC
GCGGCGGGACGCGTCCAGCTTAAGGTTGCCCCGTACGTGGAAAAGGAGCCGGATCGCGCAAACGAATTCACGCAAGGGTT
CGGTTTGAACATACTTGGGCGAGACTATACGTACAAAAGCGCACCTCATGTAATGGGTCATATCGCGTCGGTATATTGCA
CAAGCCCGTTCGCGATTTTCAAACAAAAGGCGCTCTGCTTGGTGTGGGATGGTAGTATTTGGCCGCGACTGTACGAGATT
TCGGACGGAGGGATTAGGTTTATTAATACGCTGTTCCCCATGATCGGCCATGCCTACGCCTGCGCCGGCCACCATTTTGG
ACCCTATAAGAATGCGGACAGAACCAGTTGGAAGCTCGATCTAGCCGGCAAACTGATGTCGTACATGAGTACAGGGACTG
TAGATAGCCGAATCACGGCTGCCATACAGACGAGCTATCAAAATAACCTCGCGGGACACTCGCCCAATGCGTTATCCTAC
CGTAGGATGTCTGCGAATACTAGCGTCGCCCTGATACAGACCCATCGATTCTTCGAAGAGATAGGTGTTCTAGTCGCCGG
CGCGCCGGAGCACGATATTCTGGCCACATTTCATTATTTCGTGGAGCGTCTTTTGATCGAAACGCTCCGGCATGAGCTTG
CTCGTGCGGGGCGCAACATGTCGCGCAACTTGTGCATATCGGGGGGGTGCGGCTTAAACATCAAATGGAACAGCGCGCTT
AGATCCAGCGGCCTGTTCAGAGATGTTTGGGTTTCACCCTTCCCAAATGATAGCGGATCTGCCATCGGGGCGGCGTGCAG
CGCACTTGTCGCGAACGACGGCCTAGTTCCCATTAACTGGTCCGTATTCAGCGGGCCCCATCTGGTGAAGTCAACGCCAG
ATGCCAATTGGCGCGGATCTGCATGCGAGCTTTCAGAACTCGCGGCCTTGTTGGCGGACGGCGAGCCGGTCGTATTTCTG
GCTGGCCGCGCCGAGCTGGGGCCTAGGGCGCTCGGCGCTCGGAGTATCCTAGCCCCTGCATCCGATCGCTCGATGAAAGA
CCGGCTCAATGCCGCGAAGCAGAGAGAATACTTTCGCCCAGTGGCTCCAATATGCCTAGAAGATCGTGCGCCTGAGATCT
TTGAACCGGGATCGAACGATCGCTACATGTTGTACGATCACAAGGTTCGTGAAGGCTGGCGCGATAGGGTGCCGGCCATT
ATGCACCTTGATGGCTCGGCGCGAGTGCAAACCATCGCGCGTACGTCGGCGCATCCGGTGGCGAAGCTACTCGTAGAATA
CGAGAAACTTACGAATATCCCCTTGCTCTGCAATACAAGTGCGAATGCGCTCGGTCGGGGCTTTTTCCCAGACGTTGCGT
CAGCCTGCACTTGGGGAAGGATCGCGAAAGTTTGGGCGGAAAACGTCCTATGGAGCAATGATGTTGATGCGCGAATCCCC
TGA

Upstream 100 bases:

>100_bases
ACGGCGCATCAACGGTGGACTGCCGGGGCAGGATTGTGTCATCGCGAAACTCACCCGACGTTGAGCAAGGCAATCTCTAA
CAAGGACCAGGGGCCGGACG

Downstream 100 bases:

>100_bases
CGATAGGCACTATACCGTCTCAGCGACGGGGGTCTGGAAGAAAAGGGGCGGCATCGACGTCCTAAGAGGACTCGACATGT
ATGTCAGGAGAGGGGAGAGA

Product: nodulation protein U

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 560; Mature: 560

Protein sequence:

>560_residues
MKRCGLKLTHDGGVAVLDGRDLVACIEMEKLTNNERYRRIEHTDEIALALHRSGFQPSDIDEYIIDGWDGEVDAWVELLG
AAGRVQLKVAPYVEKEPDRANEFTQGFGLNILGRDYTYKSAPHVMGHIASVYCTSPFAIFKQKALCLVWDGSIWPRLYEI
SDGGIRFINTLFPMIGHAYACAGHHFGPYKNADRTSWKLDLAGKLMSYMSTGTVDSRITAAIQTSYQNNLAGHSPNALSY
RRMSANTSVALIQTHRFFEEIGVLVAGAPEHDILATFHYFVERLLIETLRHELARAGRNMSRNLCISGGCGLNIKWNSAL
RSSGLFRDVWVSPFPNDSGSAIGAACSALVANDGLVPINWSVFSGPHLVKSTPDANWRGSACELSELAALLADGEPVVFL
AGRAELGPRALGARSILAPASDRSMKDRLNAAKQREYFRPVAPICLEDRAPEIFEPGSNDRYMLYDHKVREGWRDRVPAI
MHLDGSARVQTIARTSAHPVAKLLVEYEKLTNIPLLCNTSANALGRGFFPDVASACTWGRIAKVWAENVLWSNDVDARIP

Sequences:

>Translated_560_residues
MKRCGLKLTHDGGVAVLDGRDLVACIEMEKLTNNERYRRIEHTDEIALALHRSGFQPSDIDEYIIDGWDGEVDAWVELLG
AAGRVQLKVAPYVEKEPDRANEFTQGFGLNILGRDYTYKSAPHVMGHIASVYCTSPFAIFKQKALCLVWDGSIWPRLYEI
SDGGIRFINTLFPMIGHAYACAGHHFGPYKNADRTSWKLDLAGKLMSYMSTGTVDSRITAAIQTSYQNNLAGHSPNALSY
RRMSANTSVALIQTHRFFEEIGVLVAGAPEHDILATFHYFVERLLIETLRHELARAGRNMSRNLCISGGCGLNIKWNSAL
RSSGLFRDVWVSPFPNDSGSAIGAACSALVANDGLVPINWSVFSGPHLVKSTPDANWRGSACELSELAALLADGEPVVFL
AGRAELGPRALGARSILAPASDRSMKDRLNAAKQREYFRPVAPICLEDRAPEIFEPGSNDRYMLYDHKVREGWRDRVPAI
MHLDGSARVQTIARTSAHPVAKLLVEYEKLTNIPLLCNTSANALGRGFFPDVASACTWGRIAKVWAENVLWSNDVDARIP
>Mature_560_residues
MKRCGLKLTHDGGVAVLDGRDLVACIEMEKLTNNERYRRIEHTDEIALALHRSGFQPSDIDEYIIDGWDGEVDAWVELLG
AAGRVQLKVAPYVEKEPDRANEFTQGFGLNILGRDYTYKSAPHVMGHIASVYCTSPFAIFKQKALCLVWDGSIWPRLYEI
SDGGIRFINTLFPMIGHAYACAGHHFGPYKNADRTSWKLDLAGKLMSYMSTGTVDSRITAAIQTSYQNNLAGHSPNALSY
RRMSANTSVALIQTHRFFEEIGVLVAGAPEHDILATFHYFVERLLIETLRHELARAGRNMSRNLCISGGCGLNIKWNSAL
RSSGLFRDVWVSPFPNDSGSAIGAACSALVANDGLVPINWSVFSGPHLVKSTPDANWRGSACELSELAALLADGEPVVFL
AGRAELGPRALGARSILAPASDRSMKDRLNAAKQREYFRPVAPICLEDRAPEIFEPGSNDRYMLYDHKVREGWRDRVPAI
MHLDGSARVQTIARTSAHPVAKLLVEYEKLTNIPLLCNTSANALGRGFFPDVASACTWGRIAKVWAENVLWSNDVDARIP

Specific function: Involved in 6-O-carbamoylation of Nod-factors

COG id: COG2192

COG function: function code O; Predicted carbamoyl transferase, NodU family

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the NodU/CmcH family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NODU_AZOC5 (Q07759)

Other databases:

- EMBL:   L18897
- EMBL:   AP009384
- PIR:   S35006
- RefSeq:   YP_001526730.1
- ProteinModelPortal:   Q07759
- GeneID:   5691401
- GenomeReviews:   AP009384_GR
- KEGG:   azc:AZC_3814
- HOGENOM:   HBG334847
- OMA:   PNDSGSA
- ProtClustDB:   CLSK893865
- BioCyc:   ACAU438753:AZC_3814-MONOMER
- GO:   GO:0009877
- InterPro:   IPR003696

Pfam domain/function: PF02543 CmcH_NodU

EC number: NA

Molecular weight: Translated: 61832; Mature: 61832

Theoretical pI: Translated: 7.23; Mature: 7.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRCGLKLTHDGGVAVLDGRDLVACIEMEKLTNNERYRRIEHTDEIALALHRSGFQPSDI
CCCCCCEEECCCCEEEECCCCEEEEEEHHHHCCCHHHHHHCCHHHHHHHHHHCCCCCCCC
DEYIIDGWDGEVDAWVELLGAAGRVQLKVAPYVEKEPDRANEFTQGFGLNILGRDYTYKS
HHHHHCCCCCCHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHCCCCEEECCCCCCCC
APHVMGHIASVYCTSPFAIFKQKALCLVWDGSIWPRLYEISDGGIRFINTLFPMIGHAYA
CCHHHHHHHHHHCCCCHHHHCCCCEEEEECCCCCCEEEEECCCCHHHHHHHHHHHHHHHH
CAGHHFGPYKNADRTSWKLDLAGKLMSYMSTGTVDSRITAAIQTSYQNNLAGHSPNALSY
HCCCCCCCCCCCCCCEEEEHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCEE
RRMSANTSVALIQTHRFFEEIGVLVAGAPEHDILATFHYFVERLLIETLRHELARAGRNM
EEECCCCCEEEEHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
SRNLCISGGCGLNIKWNSALRSSGLFRDVWVSPFPNDSGSAIGAACSALVANDGLVPINW
CCCEEEECCCCEEEEECHHHHHCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCEEEEEE
SVFSGPHLVKSTPDANWRGSACELSELAALLADGEPVVFLAGRAELGPRALGARSILAPA
EEECCCEEECCCCCCCCCCCCCCHHHHHHHHCCCCEEEEEECCCCCCCHHCCCCHHCCCC
SDRSMKDRLNAAKQREYFRPVAPICLEDRAPEIFEPGSNDRYMLYDHKVREGWRDRVPAI
CCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCEEEEECHHHHHHHHCCCEE
MHLDGSARVQTIARTSAHPVAKLLVEYEKLTNIPLLCNTSANALGRGFFPDVASACTWGR
EEECCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEECCCCCHHCCCCCHHHHHHHHHHH
IAKVWAENVLWSNDVDARIP
HHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MKRCGLKLTHDGGVAVLDGRDLVACIEMEKLTNNERYRRIEHTDEIALALHRSGFQPSDI
CCCCCCEEECCCCEEEECCCCEEEEEEHHHHCCCHHHHHHCCHHHHHHHHHHCCCCCCCC
DEYIIDGWDGEVDAWVELLGAAGRVQLKVAPYVEKEPDRANEFTQGFGLNILGRDYTYKS
HHHHHCCCCCCHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHCCCCEEECCCCCCCC
APHVMGHIASVYCTSPFAIFKQKALCLVWDGSIWPRLYEISDGGIRFINTLFPMIGHAYA
CCHHHHHHHHHHCCCCHHHHCCCCEEEEECCCCCCEEEEECCCCHHHHHHHHHHHHHHHH
CAGHHFGPYKNADRTSWKLDLAGKLMSYMSTGTVDSRITAAIQTSYQNNLAGHSPNALSY
HCCCCCCCCCCCCCCEEEEHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCEE
RRMSANTSVALIQTHRFFEEIGVLVAGAPEHDILATFHYFVERLLIETLRHELARAGRNM
EEECCCCCEEEEHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
SRNLCISGGCGLNIKWNSALRSSGLFRDVWVSPFPNDSGSAIGAACSALVANDGLVPINW
CCCEEEECCCCEEEEECHHHHHCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCEEEEEE
SVFSGPHLVKSTPDANWRGSACELSELAALLADGEPVVFLAGRAELGPRALGARSILAPA
EEECCCEEECCCCCCCCCCCCCCHHHHHHHHCCCCEEEEEECCCCCCCHHCCCCHHCCCC
SDRSMKDRLNAAKQREYFRPVAPICLEDRAPEIFEPGSNDRYMLYDHKVREGWRDRVPAI
CCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCEEEEECHHHHHHHHCCCEE
MHLDGSARVQTIARTSAHPVAKLLVEYEKLTNIPLLCNTSANALGRGFFPDVASACTWGR
EEECCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEECCCCCHHCCCCCHHHHHHHHHHH
IAKVWAENVLWSNDVDARIP
HHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8412659; 2615763