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The map label for this gene is glxA [H]

Identifier: 158425418

GI number: 158425418

Start: 4348995

End: 4350041

Strand: Reverse

Name: glxA [H]

Synonym: AZC_3794

Alternate gene names: 158425418

Gene position: 4350041-4348995 (Counterclockwise)

Preceding gene: 158425419

Following gene: 158425417

Centisome position: 81.01

GC content: 64.66

Gene sequence:

>1047_bases
ATGCGGATTGCAATACTCGCCCCGCCGGGCGTGCAGTCGCTGGATGTGGTTGGTCCTGCGGAGGTCTTCTGGGAAGCCGC
CCGCCGCATCGGCGATCCGGGCGCCTATGACGTTCAGGTCATCTCCACCGGGGCCCCGTCCATCGGTGGCACCGGGCAGT
TGCGCTTCCTCGCCGATCGCTCGATCTTCGATCCAGACGAACCGATCGATACATTGCTGGTGGCTGGTGATCCCTCGTTT
CAGGACATCGATCCGAACGTCATTGGCTGGCTGCGCCGCCGCGTGCCGACCGTGCGGCGCTACGGATCCATCTGTACGGG
CGCATTCCTGCTCGCCGCCGCAGGGCTGCTGCAGAACAGGCGCGTGACCACCCATTGGGAGTGCGCTGAACGGTTCTGCC
GGCAATTCCCTGACATTGAGGTGGATACCGACGCCATCTACTTGCGCGATGGACCTTTGATCACCGCCGCCGGTGTCACG
GCGGGCATCGACCTCGCCCTGGCACTAGTGGAGGAGGATCACGGGCGGCACATCGCCATGATCACCGCACGCTATATGGT
GGTGTTCCTGCGCCGGCCTGGTGGGCAGTCCCAGTTCAGTGCGCATCTGGTCGGCCAGATGGCTGAGACCTCTGTGATCC
AGAAGGCGCAGGCATACATCCTCGCGAATATAGCGCATTCATTGTCGGTGGATAACGTGGCTCACGCGGTCGGTATGAGT
GCGCGCAACTTCGCCCGCGTGTTTCGCCGCGACGTGGGGATGACGCCGGCCGATTTCGTCGCTGTGGCGCGGATTGACGC
CGCCCGCCGGCTGCTCGAGGACACCACCCAGCCCTTGCAGCGCATCGCCGCCAGTTGCGGCTTCGCGGACATGAACACGA
TGCGCCGCCTCTTCGCCAAGACGATCGGCGTGACCCCGGCGGCCTATCGCAGCCGTTTCCATAACGTGAACCAAACGAAT
GCGCAGCCGGCGAGTGGGCGCGCGGCTCGACCTGCCCTCGCACCTCACGCGAGGGGGCTCGCCAATGTATCCATTGCCTC
AGGATGA

Upstream 100 bases:

>100_bases
GCCTGGTTGAGCCGCGCGGGACTAGGTCCAAATCATGCTACCGTATCGGGCTCGCTCGACGCGGTAGCTGCATCCGCGTC
TGTCGGTTGGAGGGAACGAC

Downstream 100 bases:

>100_bases
CTGCTATAGCTCATCAGGAAGCAGCCTAGGTGTTTGATCCCGGACTTTGATGGTGCAGTCTTTTCGCAGGAATGGAAGGA
TGCGCTATGGGCCAGGTTCT

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 348; Mature: 348

Protein sequence:

>348_residues
MRIAILAPPGVQSLDVVGPAEVFWEAARRIGDPGAYDVQVISTGAPSIGGTGQLRFLADRSIFDPDEPIDTLLVAGDPSF
QDIDPNVIGWLRRRVPTVRRYGSICTGAFLLAAAGLLQNRRVTTHWECAERFCRQFPDIEVDTDAIYLRDGPLITAAGVT
AGIDLALALVEEDHGRHIAMITARYMVVFLRRPGGQSQFSAHLVGQMAETSVIQKAQAYILANIAHSLSVDNVAHAVGMS
ARNFARVFRRDVGMTPADFVAVARIDAARRLLEDTTQPLQRIAASCGFADMNTMRRLFAKTIGVTPAAYRSRFHNVNQTN
AQPASGRAARPALAPHARGLANVSIASG

Sequences:

>Translated_348_residues
MRIAILAPPGVQSLDVVGPAEVFWEAARRIGDPGAYDVQVISTGAPSIGGTGQLRFLADRSIFDPDEPIDTLLVAGDPSF
QDIDPNVIGWLRRRVPTVRRYGSICTGAFLLAAAGLLQNRRVTTHWECAERFCRQFPDIEVDTDAIYLRDGPLITAAGVT
AGIDLALALVEEDHGRHIAMITARYMVVFLRRPGGQSQFSAHLVGQMAETSVIQKAQAYILANIAHSLSVDNVAHAVGMS
ARNFARVFRRDVGMTPADFVAVARIDAARRLLEDTTQPLQRIAASCGFADMNTMRRLFAKTIGVTPAAYRSRFHNVNQTN
AQPASGRAARPALAPHARGLANVSIASG
>Mature_348_residues
MRIAILAPPGVQSLDVVGPAEVFWEAARRIGDPGAYDVQVISTGAPSIGGTGQLRFLADRSIFDPDEPIDTLLVAGDPSF
QDIDPNVIGWLRRRVPTVRRYGSICTGAFLLAAAGLLQNRRVTTHWECAERFCRQFPDIEVDTDAIYLRDGPLITAAGVT
AGIDLALALVEEDHGRHIAMITARYMVVFLRRPGGQSQFSAHLVGQMAETSVIQKAQAYILANIAHSLSVDNVAHAVGMS
ARNFARVFRRDVGMTPADFVAVARIDAARRLLEDTTQPLQRIAASCGFADMNTMRRLFAKTIGVTPAAYRSRFHNVNQTN
AQPASGRAARPALAPHARGLANVSIASG

Specific function: Regulatory Protein For The Xylbafghr Operon. [C]

COG id: COG4977

COG function: function code K; Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR002818 [H]

Pfam domain/function: PF01965 DJ-1_PfpI; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 37579; Mature: 37579

Theoretical pI: Translated: 8.94; Mature: 8.94

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRIAILAPPGVQSLDVVGPAEVFWEAARRIGDPGAYDVQVISTGAPSIGGTGQLRFLADR
CEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCEEEEEECC
SIFDPDEPIDTLLVAGDPSFQDIDPNVIGWLRRRVPTVRRYGSICTGAFLLAAAGLLQNR
CCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
RVTTHWECAERFCRQFPDIEVDTDAIYLRDGPLITAAGVTAGIDLALALVEEDHGRHIAM
CCCCHHHHHHHHHHHCCCCEECCCEEEEECCCEEEECCCHHHHHHHEEEEECCCCCEEEH
ITARYMVVFLRRPGGQSQFSAHLVGQMAETSVIQKAQAYILANIAHSLSVDNVAHAVGMS
HHHHHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCC
ARNFARVFRRDVGMTPADFVAVARIDAARRLLEDTTQPLQRIAASCGFADMNTMRRLFAK
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
TIGVTPAAYRSRFHNVNQTNAQPASGRAARPALAPHARGLANVSIASG
HHCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCC
>Mature Secondary Structure
MRIAILAPPGVQSLDVVGPAEVFWEAARRIGDPGAYDVQVISTGAPSIGGTGQLRFLADR
CEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCEEEEEECC
SIFDPDEPIDTLLVAGDPSFQDIDPNVIGWLRRRVPTVRRYGSICTGAFLLAAAGLLQNR
CCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
RVTTHWECAERFCRQFPDIEVDTDAIYLRDGPLITAAGVTAGIDLALALVEEDHGRHIAM
CCCCHHHHHHHHHHHCCCCEECCCEEEEECCCEEEECCCHHHHHHHEEEEECCCCCEEEH
ITARYMVVFLRRPGGQSQFSAHLVGQMAETSVIQKAQAYILANIAHSLSVDNVAHAVGMS
HHHHHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCC
ARNFARVFRRDVGMTPADFVAVARIDAARRLLEDTTQPLQRIAASCGFADMNTMRRLFAK
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
TIGVTPAAYRSRFHNVNQTNAQPASGRAARPALAPHARGLANVSIASG
HHCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11481430 [H]