| Definition | Azorhizobium caulinodans ORS 571, complete genome. |
|---|---|
| Accession | NC_009937 |
| Length | 5,369,772 |
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The map label for this gene is afuC [C]
Identifier: 158425379
GI number: 158425379
Start: 4309319
End: 4310182
Strand: Direct
Name: afuC [C]
Synonym: AZC_3755
Alternate gene names: 158425379
Gene position: 4309319-4310182 (Clockwise)
Preceding gene: 158425372
Following gene: 158425380
Centisome position: 80.25
GC content: 71.06
Gene sequence:
>864_bases ATGACTCTAAGAACGCTGCAATGCCAGCATCCGCAGGTGCTTGCGCGCCATCGGCGCGCTCTTGCCGGCGCGCCAAAAGG CTGCCATTCCGCGGGCACGCAACAGGACGGCAACATGGCGGAAACCGCAGGCGGGCGGAAAGATGGCGAAGGACGCGGCG GCATCGTGCTGCGGGACGTCTGGCTCGACCGGGGCGGCAGCCCGCTGTTCCGCGGCCTCTCGCTTGATCTGCCGGAGCGG CGCATCGGCCTCGTCGGCTCGAACGGCTCCGGCAAGAGCAGCCTGCTGCGTCTGCTGAACGGGCTGCTCGTGCCGGATCG CGGCCGCCTGACCGTGGCCGGGCTCGATGCCGCCCGCGACCGCCGCGACCTGCCCACCCGCGTCGGCTTCGTCTTCCAGA ATGTGGATCACCAGATCCTGTTTCCCACCGTGGGCGAGGAGATCGCCTTCGGTCTCGTGGAGCACGGCCTTGATCGCAAG GCGGCCCGCGCGGAGGCGGAGCGCCTGCTGGCGGCCCATGGCTGCGCCGGATGGGCGGGGCGGGCCGTGGACGCACTCTC CGAGGGCCAGAAGCAGCTCGTCTGCATCCTCGCGGCACTCGCCCCCGATCCGGCCATCCTCGTCATGGACGAGCCGCTCG CCAGCCTCGACCTCGCCAACCGGCGGGCGCTCCTCGCCCGGATCGAACGGTTGCCGCAGCAGGTCCTGATGGCGAGCCAT GACCTCGACCTCATCGCCGGCTTCGACCGCATCCTCTGGCTGGAGGCCGGCGCGGTGAAGGCAGACGGGCCGCCCGATGC CGTGCTGCCGGCCTATCGCGCCCATGAGGAGACGCGGGCGCGGACGCTCGGGGACCTGTCATGA
Upstream 100 bases:
>100_bases TTCCAACGCTTGCCCTGCCGCAACGAAAAATGACACCGAAGCGCCACATTTGAGACATGCTAATCTGGCCATTATTTGTT TGTAATAAATAAAAACTGTA
Downstream 100 bases:
>100_bases TCTCCGGCTACCTGCCCGGCCGCTCGCCGCTGCATCGCCTGCCGGCAGGGTGGAAGCTCGCGGGGCTCGCCGGATTGAGC GTGCTGCTGCTTCCCGCCCA
Product: ABC transporter ATPase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 287; Mature: 286
Protein sequence:
>287_residues MTLRTLQCQHPQVLARHRRALAGAPKGCHSAGTQQDGNMAETAGGRKDGEGRGGIVLRDVWLDRGGSPLFRGLSLDLPER RIGLVGSNGSGKSSLLRLLNGLLVPDRGRLTVAGLDAARDRRDLPTRVGFVFQNVDHQILFPTVGEEIAFGLVEHGLDRK AARAEAERLLAAHGCAGWAGRAVDALSEGQKQLVCILAALAPDPAILVMDEPLASLDLANRRALLARIERLPQQVLMASH DLDLIAGFDRILWLEAGAVKADGPPDAVLPAYRAHEETRARTLGDLS
Sequences:
>Translated_287_residues MTLRTLQCQHPQVLARHRRALAGAPKGCHSAGTQQDGNMAETAGGRKDGEGRGGIVLRDVWLDRGGSPLFRGLSLDLPER RIGLVGSNGSGKSSLLRLLNGLLVPDRGRLTVAGLDAARDRRDLPTRVGFVFQNVDHQILFPTVGEEIAFGLVEHGLDRK AARAEAERLLAAHGCAGWAGRAVDALSEGQKQLVCILAALAPDPAILVMDEPLASLDLANRRALLARIERLPQQVLMASH DLDLIAGFDRILWLEAGAVKADGPPDAVLPAYRAHEETRARTLGDLS >Mature_286_residues TLRTLQCQHPQVLARHRRALAGAPKGCHSAGTQQDGNMAETAGGRKDGEGRGGIVLRDVWLDRGGSPLFRGLSLDLPERR IGLVGSNGSGKSSLLRLLNGLLVPDRGRLTVAGLDAARDRRDLPTRVGFVFQNVDHQILFPTVGEEIAFGLVEHGLDRKA ARAEAERLLAAHGCAGWAGRAVDALSEGQKQLVCILAALAPDPAILVMDEPLASLDLANRRALLARIERLPQQVLMASHD LDLIAGFDRILWLEAGAVKADGPPDAVLPAYRAHEETRARTLGDLS
Specific function: Probably part of an ABC transporter complex. Responsible for energy coupling to the transport system [H]
COG id: COG1122
COG function: function code P; ABC-type cobalt transport system, ATPase component
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI27436953, Length=227, Percent_Identity=30.3964757709251, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI116734710, Length=179, Percent_Identity=31.2849162011173, Blast_Score=76, Evalue=4e-14, Organism=Homo sapiens, GI105990541, Length=212, Percent_Identity=28.7735849056604, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI255708477, Length=235, Percent_Identity=28.0851063829787, Blast_Score=72, Evalue=4e-13, Organism=Homo sapiens, GI9665248, Length=207, Percent_Identity=30.9178743961353, Blast_Score=72, Evalue=5e-13, Organism=Homo sapiens, GI153792144, Length=225, Percent_Identity=28, Blast_Score=72, Evalue=7e-13, Organism=Homo sapiens, GI4505771, Length=242, Percent_Identity=29.3388429752066, Blast_Score=70, Evalue=3e-12, Organism=Homo sapiens, GI9961252, Length=242, Percent_Identity=29.3388429752066, Blast_Score=69, Evalue=5e-12, Organism=Homo sapiens, GI171184400, Length=215, Percent_Identity=30.6976744186047, Blast_Score=69, Evalue=5e-12, Organism=Homo sapiens, GI27881501, Length=220, Percent_Identity=27.7272727272727, Blast_Score=69, Evalue=7e-12, Organism=Homo sapiens, GI30795238, Length=220, Percent_Identity=27.7272727272727, Blast_Score=69, Evalue=7e-12, Organism=Homo sapiens, GI42741659, Length=214, Percent_Identity=28.5046728971963, Blast_Score=68, Evalue=9e-12, Organism=Homo sapiens, GI9955963, Length=201, Percent_Identity=28.8557213930348, Blast_Score=68, Evalue=1e-11, Organism=Homo sapiens, GI9961250, Length=233, Percent_Identity=28.3261802575107, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI42490749, Length=213, Percent_Identity=27.2300469483568, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI45446740, Length=201, Percent_Identity=27.363184079602, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI47078218, Length=201, Percent_Identity=27.363184079602, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI21536378, Length=230, Percent_Identity=26.9565217391304, Blast_Score=65, Evalue=5e-11, Organism=Escherichia coli, GI87081709, Length=223, Percent_Identity=31.390134529148, Blast_Score=98, Evalue=7e-22, Organism=Escherichia coli, GI1788761, Length=229, Percent_Identity=34.9344978165939, Blast_Score=91, Evalue=9e-20, Organism=Escherichia coli, GI1788225, Length=234, Percent_Identity=32.0512820512821, Blast_Score=91, Evalue=1e-19, Organism=Escherichia coli, GI1787029, Length=236, Percent_Identity=30.5084745762712, Blast_Score=86, Evalue=2e-18, Organism=Escherichia coli, GI1789032, Length=226, Percent_Identity=32.7433628318584, Blast_Score=86, Evalue=2e-18, Organism=Escherichia coli, GI87081782, Length=201, Percent_Identity=30.8457711442786, Blast_Score=84, Evalue=1e-17, Organism=Escherichia coli, GI48994943, Length=211, Percent_Identity=31.2796208530806, Blast_Score=84, Evalue=1e-17, Organism=Escherichia coli, GI1786872, Length=198, Percent_Identity=32.3232323232323, Blast_Score=83, Evalue=2e-17, Organism=Escherichia coli, GI1789672, Length=245, Percent_Identity=30.6122448979592, Blast_Score=79, Evalue=3e-16, Organism=Escherichia coli, GI1787089, Length=208, Percent_Identity=32.6923076923077, Blast_Score=79, Evalue=4e-16, Organism=Escherichia coli, GI1786563, Length=195, Percent_Identity=32.3076923076923, Blast_Score=78, Evalue=5e-16, Organism=Escherichia coli, GI1790467, Length=221, Percent_Identity=30.316742081448, Blast_Score=78, Evalue=8e-16, Organism=Escherichia coli, GI1786345, Length=233, Percent_Identity=31.7596566523605, Blast_Score=78, Evalue=8e-16, Organism=Escherichia coli, GI1789873, Length=191, Percent_Identity=32.9842931937173, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI1787792, Length=232, Percent_Identity=28.8793103448276, Blast_Score=76, Evalue=3e-15, Organism=Escherichia coli, GI1787143, Length=273, Percent_Identity=27.4725274725275, Blast_Score=74, Evalue=9e-15, Organism=Escherichia coli, GI87081791, Length=207, Percent_Identity=31.4009661835749, Blast_Score=74, Evalue=2e-14, Organism=Escherichia coli, GI1787712, Length=199, Percent_Identity=29.6482412060301, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI1788450, Length=219, Percent_Identity=31.0502283105023, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI1786803, Length=224, Percent_Identity=28.5714285714286, Blast_Score=72, Evalue=3e-14, Organism=Escherichia coli, GI1786319, Length=183, Percent_Identity=27.8688524590164, Blast_Score=72, Evalue=6e-14, Organism=Escherichia coli, GI1788165, Length=221, Percent_Identity=30.316742081448, Blast_Score=71, Evalue=9e-14, Organism=Escherichia coli, GI1787370, Length=240, Percent_Identity=27.0833333333333, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI1786981, Length=198, Percent_Identity=35.8585858585859, Blast_Score=68, Evalue=8e-13, Organism=Escherichia coli, GI1786398, Length=190, Percent_Identity=28.9473684210526, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI1786253, Length=172, Percent_Identity=33.1395348837209, Blast_Score=67, Evalue=2e-12, Organism=Escherichia coli, GI1788644, Length=208, Percent_Identity=29.8076923076923, Blast_Score=66, Evalue=3e-12, Organism=Escherichia coli, GI87081834, Length=190, Percent_Identity=31.5789473684211, Blast_Score=66, Evalue=3e-12, Organism=Escherichia coli, GI1787105, Length=205, Percent_Identity=28.780487804878, Blast_Score=66, Evalue=3e-12, Organism=Escherichia coli, GI1790190, Length=179, Percent_Identity=29.608938547486, Blast_Score=65, Evalue=4e-12, Organism=Escherichia coli, GI87082267, Length=216, Percent_Identity=30.5555555555556, Blast_Score=65, Evalue=5e-12, Organism=Escherichia coli, GI1789962, Length=226, Percent_Identity=28.7610619469027, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI1787164, Length=197, Percent_Identity=36.0406091370558, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI1789891, Length=191, Percent_Identity=30.8900523560209, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI1790544, Length=210, Percent_Identity=28.5714285714286, Blast_Score=63, Evalue=2e-11, Organism=Escherichia coli, GI145693107, Length=237, Percent_Identity=29.957805907173, Blast_Score=62, Evalue=3e-11, Organism=Escherichia coli, GI48995001, Length=223, Percent_Identity=27.3542600896861, Blast_Score=61, Evalue=7e-11, Organism=Caenorhabditis elegans, GI193208177, Length=223, Percent_Identity=31.8385650224215, Blast_Score=77, Evalue=9e-15, Organism=Caenorhabditis elegans, GI193202349, Length=234, Percent_Identity=29.0598290598291, Blast_Score=77, Evalue=9e-15, Organism=Caenorhabditis elegans, GI71984940, Length=239, Percent_Identity=30.1255230125523, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI17565938, Length=254, Percent_Identity=29.5275590551181, Blast_Score=75, Evalue=5e-14, Organism=Caenorhabditis elegans, GI17559834, Length=204, Percent_Identity=32.3529411764706, Blast_Score=73, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17541710, Length=265, Percent_Identity=27.1698113207547, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI193209708, Length=232, Percent_Identity=27.5862068965517, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI115533608, Length=183, Percent_Identity=27.3224043715847, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI115534520, Length=264, Percent_Identity=26.8939393939394, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17567269, Length=226, Percent_Identity=29.646017699115, Blast_Score=69, Evalue=4e-12, Organism=Caenorhabditis elegans, GI17558664, Length=234, Percent_Identity=26.4957264957265, Blast_Score=68, Evalue=6e-12, Organism=Caenorhabditis elegans, GI17567265, Length=223, Percent_Identity=26.9058295964126, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI115535101, Length=241, Percent_Identity=28.6307053941909, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI71992285, Length=221, Percent_Identity=28.0542986425339, Blast_Score=66, Evalue=3e-11, Organism=Caenorhabditis elegans, GI71983523, Length=209, Percent_Identity=26.7942583732057, Blast_Score=65, Evalue=4e-11, Organism=Caenorhabditis elegans, GI71983516, Length=209, Percent_Identity=26.7942583732057, Blast_Score=65, Evalue=4e-11, Organism=Caenorhabditis elegans, GI71983510, Length=209, Percent_Identity=26.7942583732057, Blast_Score=65, Evalue=4e-11, Organism=Saccharomyces cerevisiae, GI6321121, Length=196, Percent_Identity=31.6326530612245, Blast_Score=69, Evalue=8e-13, Organism=Drosophila melanogaster, GI281363262, Length=255, Percent_Identity=27.843137254902, Blast_Score=75, Evalue=5e-14, Organism=Drosophila melanogaster, GI24653245, Length=255, Percent_Identity=27.843137254902, Blast_Score=75, Evalue=7e-14, Organism=Drosophila melanogaster, GI28573573, Length=164, Percent_Identity=31.7073170731707, Blast_Score=74, Evalue=9e-14, Organism=Drosophila melanogaster, GI28573571, Length=164, Percent_Identity=31.7073170731707, Blast_Score=74, Evalue=9e-14, Organism=Drosophila melanogaster, GI24643674, Length=238, Percent_Identity=28.5714285714286, Blast_Score=72, Evalue=4e-13, Organism=Drosophila melanogaster, GI221474134, Length=229, Percent_Identity=31.0043668122271, Blast_Score=72, Evalue=5e-13, Organism=Drosophila melanogaster, GI17136662, Length=230, Percent_Identity=25.6521739130435, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI24666836, Length=190, Percent_Identity=31.0526315789474, Blast_Score=65, Evalue=5e-11, Organism=Drosophila melanogaster, GI85726357, Length=197, Percent_Identity=30.9644670050761, Blast_Score=64, Evalue=9e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: 3.6.3.30 [C]
Molecular weight: Translated: 30754; Mature: 30623
Theoretical pI: Translated: 8.03; Mature: 8.03
Prosite motif: PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTLRTLQCQHPQVLARHRRALAGAPKGCHSAGTQQDGNMAETAGGRKDGEGRGGIVLRDV CCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCEEEEEE WLDRGGSPLFRGLSLDLPERRIGLVGSNGSGKSSLLRLLNGLLVPDRGRLTVAGLDAARD ECCCCCCHHHCCCCCCCCHHHEEEEECCCCCHHHHHHHHHCCCCCCCCCEEEEECCHHHH RRDLPTRVGFVFQNVDHQILFPTVGEEIAFGLVEHGLDRKAARAEAERLLAAHGCAGWAG HHCCCHHHHHHHHCCCCEEECCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHH RAVDALSEGQKQLVCILAALAPDPAILVMDEPLASLDLANRRALLARIERLPQQVLMASH HHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC DLDLIAGFDRILWLEAGAVKADGPPDAVLPAYRAHEETRARTLGDLS CHHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCC >Mature Secondary Structure TLRTLQCQHPQVLARHRRALAGAPKGCHSAGTQQDGNMAETAGGRKDGEGRGGIVLRDV CCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCEEEEEE WLDRGGSPLFRGLSLDLPERRIGLVGSNGSGKSSLLRLLNGLLVPDRGRLTVAGLDAARD ECCCCCCHHHCCCCCCCCHHHEEEEECCCCCHHHHHHHHHCCCCCCCCCEEEEECCHHHH RRDLPTRVGFVFQNVDHQILFPTVGEEIAFGLVEHGLDRKAARAEAERLLAAHGCAGWAG HHCCCHHHHHHHHCCCCEEECCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHH RAVDALSEGQKQLVCILAALAPDPAILVMDEPLASLDLANRRALLARIERLPQQVLMASH HHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC DLDLIAGFDRILWLEAGAVKADGPPDAVLPAYRAHEETRARTLGDLS CHHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 14528314 [H]