| Definition | Azorhizobium caulinodans ORS 571, complete genome. |
|---|---|
| Accession | NC_009937 |
| Length | 5,369,772 |
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The map label for this gene is pyk [H]
Identifier: 158425115
GI number: 158425115
Start: 4008227
End: 4009702
Strand: Direct
Name: pyk [H]
Synonym: AZC_3491
Alternate gene names: 158425115
Gene position: 4008227-4009702 (Clockwise)
Preceding gene: 158425114
Following gene: 158425116
Centisome position: 74.64
GC content: 67.89
Gene sequence:
>1476_bases ATGCCGCTGAAGCGCAACCGCGCCACGAAAATCATCGCCACCGTGGGCCCGGCCTCCAACACGCCGGAGAAGCTCAAGGC CCTCTTCCTGGCCGGTGTCGATGTGTTCCGGCTCAATTTCAGCCATGGGACGCAGGCCGACCATGGCATCGTTCTCGGCC ATATCCGCCGCCTTGAAGCCGAGATCGGCCGCCCCATCGGCGTCATCGCCGATCTTCAGGGCCCGAAGCTGCGCGTCGGC CGCTTCACCGAGGGTGCCATCACCTTCACCCCCGGCAAGCGCCTGCGCTTCGACGCAGATGTCGCGACCATGGGCGATGC CGACCGCGTGCCCATTCCCCACCCCGACATCATCGAAGCCCTGACCATCGGCAGCACCGTCCTGTGCGACGACGGCAAGG TGCGCCTGAAGGTGGTGGGCAAGGGCGACGGCTGGCTCGACGCGGAAGTGGTCAGCGGCACGCGCCTGTCCAACAACAAG GGCTTCAACATCCCCGACGTGGTGCTGCCGCTCTCCCCTCTGACGGAGAAGGACCGCGCCGACCTCGCCTTCGCCGTGGA GCAGGGCGTGGAGTGGATCGCTCTGTCCTTCGTGCAGCGCCCGGAAGACATCCACGAGGCACGCGACCTCATCAAGGGCC GCGCTGCCGTGATGCTGAAGATGGAGAAGCCGGCGGCCGTCGAGCATCTGGAAGAGCTTGTGGAGCTTTCCGATGCCATC ATGGTGGCGCGCGGCGATCTCGGCGTGGAACTCTCGCTGCCCGAACTGCCCGCCCTCCAGAAGCGTATGATTACGGAATC CCGCAGACAGGGTCGCCCGGTGATCGTGGCGACCCAGATGCTGGAGAGCATGATCTCCGCCCCCGTGCCCACCCGCGCGG AGGTCTCCGACGTCGCCACCGCCGTCTATGAGGGCGCGGACTGCGTGATGCTCTCCGCCGAGAGCGCGGCGGGCCAGTAT CCCGTGGAAGCGGTCTCCTTCATGGACGAAATCATCCGCCACGTGGAGCGCGACCCCGGCTACCGGCAGGTGCTGGATGC GACGCAGGCGGAATGGGGCAAGACCATCGGCGATGCCATGACCAAGGCCGCCTACCAGACGGCGCTCGCCGTCGATGCCG CCGCCATCGTCGCCTATACGCTCTCCGGCACCACGGGCCTGCGCGCCGCACGCGAGCGCCCGCCCATGCCCATCCTCGGC ATCACAACCCGCGCCGACACCGCCCGCCGGCTCGCCCTCTCTTATGGCGTGCATGCGGTGAATGTGGGCGAGGACATCCA TTCCTTCGGCGAGATGGTGGACCGCGCGGTGCAGGTGGCCGTGGAGCAGCAGCTGGCCGCGCCCGGCGATCGGCTCGCGA TCACGGCCGGCGTGCCCTTCGCCAAGCCCGGCACCACGAACATCCTGCGGGTCACCACCATCGGGGATACCGACCCGCCG TCGAAGTTCGACACGGACGGTGCGACCGCAACCTGA
Upstream 100 bases:
>100_bases GGGCCATGGCGGTGACGCACCTGCGTCACCGCGCCTTTGTATCAAGTGCGATCAGGACAAAGGCGGCACGGCAGATGTCG CCCAATCGGGGGAGACATCC
Downstream 100 bases:
>100_bases AGCACGCAGGCGCCAGCGCACGCCCGCCCTGGTCGATAAAGCCGGCCCCTCGCGCCGCCTGACGTAAGGGCGATGCGACC ATTTGCTGACCTCTTCAGGG
Product: pyruvate kinase
Products: NA
Alternate protein names: PK [H]
Number of amino acids: Translated: 491; Mature: 490
Protein sequence:
>491_residues MPLKRNRATKIIATVGPASNTPEKLKALFLAGVDVFRLNFSHGTQADHGIVLGHIRRLEAEIGRPIGVIADLQGPKLRVG RFTEGAITFTPGKRLRFDADVATMGDADRVPIPHPDIIEALTIGSTVLCDDGKVRLKVVGKGDGWLDAEVVSGTRLSNNK GFNIPDVVLPLSPLTEKDRADLAFAVEQGVEWIALSFVQRPEDIHEARDLIKGRAAVMLKMEKPAAVEHLEELVELSDAI MVARGDLGVELSLPELPALQKRMITESRRQGRPVIVATQMLESMISAPVPTRAEVSDVATAVYEGADCVMLSAESAAGQY PVEAVSFMDEIIRHVERDPGYRQVLDATQAEWGKTIGDAMTKAAYQTALAVDAAAIVAYTLSGTTGLRAARERPPMPILG ITTRADTARRLALSYGVHAVNVGEDIHSFGEMVDRAVQVAVEQQLAAPGDRLAITAGVPFAKPGTTNILRVTTIGDTDPP SKFDTDGATAT
Sequences:
>Translated_491_residues MPLKRNRATKIIATVGPASNTPEKLKALFLAGVDVFRLNFSHGTQADHGIVLGHIRRLEAEIGRPIGVIADLQGPKLRVG RFTEGAITFTPGKRLRFDADVATMGDADRVPIPHPDIIEALTIGSTVLCDDGKVRLKVVGKGDGWLDAEVVSGTRLSNNK GFNIPDVVLPLSPLTEKDRADLAFAVEQGVEWIALSFVQRPEDIHEARDLIKGRAAVMLKMEKPAAVEHLEELVELSDAI MVARGDLGVELSLPELPALQKRMITESRRQGRPVIVATQMLESMISAPVPTRAEVSDVATAVYEGADCVMLSAESAAGQY PVEAVSFMDEIIRHVERDPGYRQVLDATQAEWGKTIGDAMTKAAYQTALAVDAAAIVAYTLSGTTGLRAARERPPMPILG ITTRADTARRLALSYGVHAVNVGEDIHSFGEMVDRAVQVAVEQQLAAPGDRLAITAGVPFAKPGTTNILRVTTIGDTDPP SKFDTDGATAT >Mature_490_residues PLKRNRATKIIATVGPASNTPEKLKALFLAGVDVFRLNFSHGTQADHGIVLGHIRRLEAEIGRPIGVIADLQGPKLRVGR FTEGAITFTPGKRLRFDADVATMGDADRVPIPHPDIIEALTIGSTVLCDDGKVRLKVVGKGDGWLDAEVVSGTRLSNNKG FNIPDVVLPLSPLTEKDRADLAFAVEQGVEWIALSFVQRPEDIHEARDLIKGRAAVMLKMEKPAAVEHLEELVELSDAIM VARGDLGVELSLPELPALQKRMITESRRQGRPVIVATQMLESMISAPVPTRAEVSDVATAVYEGADCVMLSAESAAGQYP VEAVSFMDEIIRHVERDPGYRQVLDATQAEWGKTIGDAMTKAAYQTALAVDAAAIVAYTLSGTTGLRAARERPPMPILGI TTRADTARRLALSYGVHAVNVGEDIHSFGEMVDRAVQVAVEQQLAAPGDRLAITAGVPFAKPGTTNILRVTTIGDTDPPS KFDTDGATAT
Specific function: Glycolysis; final step. [C]
COG id: COG0469
COG function: function code G; Pyruvate kinase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the pyruvate kinase family [H]
Homologues:
Organism=Homo sapiens, GI33286422, Length=492, Percent_Identity=36.1788617886179, Blast_Score=280, Evalue=2e-75, Organism=Homo sapiens, GI33286420, Length=492, Percent_Identity=36.1788617886179, Blast_Score=280, Evalue=2e-75, Organism=Homo sapiens, GI33286418, Length=492, Percent_Identity=36.1788617886179, Blast_Score=275, Evalue=1e-73, Organism=Homo sapiens, GI32967597, Length=491, Percent_Identity=36.0488798370672, Blast_Score=270, Evalue=3e-72, Organism=Homo sapiens, GI10835121, Length=491, Percent_Identity=36.0488798370672, Blast_Score=270, Evalue=3e-72, Organism=Homo sapiens, GI310128732, Length=288, Percent_Identity=36.4583333333333, Blast_Score=174, Evalue=2e-43, Organism=Homo sapiens, GI310128730, Length=288, Percent_Identity=36.4583333333333, Blast_Score=174, Evalue=2e-43, Organism=Homo sapiens, GI310128736, Length=236, Percent_Identity=33.8983050847458, Blast_Score=131, Evalue=2e-30, Organism=Homo sapiens, GI310128734, Length=236, Percent_Identity=33.8983050847458, Blast_Score=131, Evalue=2e-30, Organism=Homo sapiens, GI310128738, Length=215, Percent_Identity=31.6279069767442, Blast_Score=108, Evalue=9e-24, Organism=Escherichia coli, GI1787965, Length=471, Percent_Identity=35.6687898089172, Blast_Score=288, Evalue=5e-79, Organism=Escherichia coli, GI1788160, Length=481, Percent_Identity=36.7983367983368, Blast_Score=280, Evalue=1e-76, Organism=Caenorhabditis elegans, GI17544584, Length=484, Percent_Identity=33.4710743801653, Blast_Score=254, Evalue=5e-68, Organism=Caenorhabditis elegans, GI71984406, Length=484, Percent_Identity=34.7107438016529, Blast_Score=249, Evalue=2e-66, Organism=Caenorhabditis elegans, GI17506829, Length=484, Percent_Identity=34.7107438016529, Blast_Score=249, Evalue=3e-66, Organism=Caenorhabditis elegans, GI71984413, Length=484, Percent_Identity=34.7107438016529, Blast_Score=249, Evalue=3e-66, Organism=Caenorhabditis elegans, GI17506831, Length=484, Percent_Identity=34.7107438016529, Blast_Score=248, Evalue=4e-66, Organism=Saccharomyces cerevisiae, GI6319279, Length=485, Percent_Identity=33.8144329896907, Blast_Score=254, Evalue=2e-68, Organism=Saccharomyces cerevisiae, GI6324923, Length=495, Percent_Identity=34.3434343434343, Blast_Score=253, Evalue=5e-68, Organism=Drosophila melanogaster, GI24648964, Length=493, Percent_Identity=33.2657200811359, Blast_Score=256, Evalue=2e-68, Organism=Drosophila melanogaster, GI28571814, Length=493, Percent_Identity=33.2657200811359, Blast_Score=256, Evalue=2e-68, Organism=Drosophila melanogaster, GI24581235, Length=424, Percent_Identity=31.1320754716981, Blast_Score=229, Evalue=5e-60, Organism=Drosophila melanogaster, GI24648966, Length=409, Percent_Identity=32.7628361858191, Blast_Score=205, Evalue=7e-53, Organism=Drosophila melanogaster, GI24646914, Length=265, Percent_Identity=33.5849056603774, Blast_Score=147, Evalue=2e-35,
Paralogues:
None
Copy number: 500 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 124 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001697 - InterPro: IPR015813 - InterPro: IPR011037 - InterPro: IPR015794 - InterPro: IPR018209 - InterPro: IPR015793 - InterPro: IPR015795 - InterPro: IPR015806 [H]
Pfam domain/function: PF00224 PK; PF02887 PK_C [H]
EC number: =2.7.1.40 [H]
Molecular weight: Translated: 52633; Mature: 52502
Theoretical pI: Translated: 5.38; Mature: 5.38
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPLKRNRATKIIATVGPASNTPEKLKALFLAGVDVFRLNFSHGTQADHGIVLGHIRRLEA CCCCCCCCEEEEEEECCCCCCHHHHHHHHHHCCEEEEEECCCCCCCCCCCHHHHHHHHHH EIGRPIGVIADLQGPKLRVGRFTEGAITFTPGKRLRFDADVATMGDADRVPIPHPDIIEA HHCCCEEEEEECCCCCEEECEEECCEEEECCCCCEEECCCEEECCCCCCCCCCCCHHHHH LTIGSTVLCDDGKVRLKVVGKGDGWLDAEVVSGTRLSNNKGFNIPDVVLPLSPLTEKDRA HHCCCEEEECCCCEEEEEEECCCCCEEEEEECCEEECCCCCCCCCCEEECCCCCCCCCCH DLAFAVEQGVEWIALSFVQRPEDIHEARDLIKGRAAVMLKMEKPAAVEHLEELVELSDAI HHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHHE MVARGDLGVELSLPELPALQKRMITESRRQGRPVIVATQMLESMISAPVPTRAEVSDVAT EEEECCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEHHHHHHHHHCCCCCCCCHHHHHHH AVYEGADCVMLSAESAAGQYPVEAVSFMDEIIRHVERDPGYRQVLDATQAEWGKTIGDAM HHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH TKAAYQTALAVDAAAIVAYTLSGTTGLRAARERPPMPILGITTRADTARRLALSYGVHAV HHHHHHHHHHHHHHEEEEEEECCCCHHHHHHCCCCCCEEEEECCCHHHHHHHHHHCEEEE NVGEDIHSFGEMVDRAVQVAVEQQLAAPGDRLAITAGVPFAKPGTTNILRVTTIGDTDPP ECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCEEEEEECCCCCCC SKFDTDGATAT CCCCCCCCCCC >Mature Secondary Structure PLKRNRATKIIATVGPASNTPEKLKALFLAGVDVFRLNFSHGTQADHGIVLGHIRRLEA CCCCCCCEEEEEEECCCCCCHHHHHHHHHHCCEEEEEECCCCCCCCCCCHHHHHHHHHH EIGRPIGVIADLQGPKLRVGRFTEGAITFTPGKRLRFDADVATMGDADRVPIPHPDIIEA HHCCCEEEEEECCCCCEEECEEECCEEEECCCCCEEECCCEEECCCCCCCCCCCCHHHHH LTIGSTVLCDDGKVRLKVVGKGDGWLDAEVVSGTRLSNNKGFNIPDVVLPLSPLTEKDRA HHCCCEEEECCCCEEEEEEECCCCCEEEEEECCEEECCCCCCCCCCEEECCCCCCCCCCH DLAFAVEQGVEWIALSFVQRPEDIHEARDLIKGRAAVMLKMEKPAAVEHLEELVELSDAI HHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHHE MVARGDLGVELSLPELPALQKRMITESRRQGRPVIVATQMLESMISAPVPTRAEVSDVAT EEEECCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEHHHHHHHHHCCCCCCCCHHHHHHH AVYEGADCVMLSAESAAGQYPVEAVSFMDEIIRHVERDPGYRQVLDATQAEWGKTIGDAM HHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH TKAAYQTALAVDAAAIVAYTLSGTTGLRAARERPPMPILGITTRADTARRLALSYGVHAV HHHHHHHHHHHHHHEEEEEEECCCCHHHHHHCCCCCCEEEEECCCHHHHHHHHHHCEEEE NVGEDIHSFGEMVDRAVQVAVEQQLAAPGDRLAITAGVPFAKPGTTNILRVTTIGDTDPP ECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCEEEEEECCCCCCC SKFDTDGATAT CCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA