| Definition | Azorhizobium caulinodans ORS 571, complete genome. |
|---|---|
| Accession | NC_009937 |
| Length | 5,369,772 |
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The map label for this gene is 158425090
Identifier: 158425090
GI number: 158425090
Start: 3981841
End: 3984180
Strand: Direct
Name: 158425090
Synonym: AZC_3466
Alternate gene names: NA
Gene position: 3981841-3984180 (Clockwise)
Preceding gene: 158425080
Following gene: 158425093
Centisome position: 74.15
GC content: 69.1
Gene sequence:
>2340_bases TTGCCGCAGGCCGCCCTCCGCCCGCGCCAGACAAGCCTCAAGCAAGTGACAGGGCCGACAAGTGCCCACTGGAACCATCC GGGCGGAACGGCCCGGCGCGCCGTGAGCATGGAGGGGAACATGGGCAAGGGTCAGCGGGCGGCATTCGGCCAGCCCGACG GCGGACGTCTGAAGTCCGCCAAGGATGCGCTGCGCGCCGGCACCCTGCATCAGGCCGGCGACCACAAGGGCGCCGCCCAG CTCTATGCCGCCTCTCTGAAGCGCGACCCGAAGAACCCCATCGTCCAGCACATGTATGCGCTGTGCCTGCGCCAGATCGG CCGCATCCCGGAAGCGGTCGCGGCGCTGCGCATCTCCACCGCGCTCGATCCCCGGAACGTGGAGGCGCTCGCGGACTACG GCAGCCTGCTGCTCCAGATGGGCGACCGTGCCGCCGCCCGCGAGGCGTTCGAGAAGGCGCTGGCGCTGCGCCCGAACCAC CCGGTAGCGAAAGCCGGCATCGCCCGCCTCTCGGCCGTGGACGGCTCCCTCGACGACCTGCTGCGCACGGTGGCGGAACA GCCCGGCAACGGGCAGGCCGCGCTCGCGCTCGGCTGCGCCATCATTTCGAGCGGCGGAGAGCCGGACGACGCGGCCAAGG TCTGGGTCGAGGCCGTGCAGCGCGGCGCGCTCACGCCCGAGGACATCGGCATCGAGGGCGTGAACGCCTATCGCGGCGGA CGCGACCGCGAAGCCCTCGCCCTGCTCAAGATCGCCGCCACGCTGAAGCCGACGGTGGCCGCGCTCCACGCCAATCTCGG CATGATCCTGCTGGAGAAGCGGCGGCACGCCGAGGCCATGGAGGCGCTGGGCGAAGCGCTGAAGGTGGACCCGAACCACG TGGGCGCGCTGCTGAACCTCGGCAGCGTCTGCCTCGACCGGAAGGCCTATCCCGAGGCCCTCGCCTATCTGAACCGCGTC CTGAAGATCGAGCCCGACAATGTGGTGGCGCGCCTCGGCGCGGCCAACGCCTCGCGGCAGATCTGCCAGTGGCGCAATGT GGAGCAGGAAGAAGCGGCCATCGCAAAGCTGCTGGCCCAGAGCGCGACCCGCACCGGCCCCTTCCTTCTCCTGTCCTCGC ACATGACGCCGAAGGACCACCTGCGCGCCGCCCGCGTATGGGCGCAGGGCGTGCGCGTGGAGCGCGACGACAAGCTGCCG CCGGCGCCGCCCGCCGATCCGTCCCGGCGCATCCGCATCGGCTATCTGTCCAACGACTATTACAATCACGCCACCACCTT CCTGGCGGTGGAGATGTTCGAGCGGCACGACCGCGAGAAGTTCGAGATCTTCGCTTATTCGCATAGCCCCGACGACAAGT CGGACATGCGCCGGCGCGTGGTTTCCGCCTTCGACCATTTCGTGGAAATCGAGCGCATGAGCAATCCGGAGGCGGCGCGC CGCATCCGGGCGGACGGCATCGACATCCTCGTCGATCTCAAGGGCTACACCCAGGGCGCCAGGTCCGAGATCATGGCCCT GCGGCCCGCGCCGGTCCAGGTGAACTTCCTCGGCTATCCCGGCAGCATGGGCGCCGACTTCATAGACTATGTGGTGGGCG ACCGCTTCGTGACCCCGCTGTCCGCCGCGGCCGACTATGACGAGAAGATCGTCCAGCTGCCCCACTGCTACCAGCCCAAC GACCGGCATCGTCGCATCTCGGAAACCCTGCCGAGCCGCGCGGCCTGCGGGCTGCCGGAGAGCGGCTTCGTCTTCTGCTG CTTCAACAACACCTACAAGATCACGCCCGCGGTCTTCTCGGTCTGGATGCGGCTGCTGGACGAGGTGCCCGACTCGGTGC TGTGGCTCTATGAGGCCAATGCGGCGGCGCGCGACAACCTCGCCTATGAGGCCGCGAAGTTCGGCATCGAGCCCGACCGC ATCATCTTCGCGCCCAATGCCCTGCTGGCGGATCATCTGGCGCGGCATGCGCACGCCGACCTGTTCCTCGACACCCTGCC CTACAATGCCCACACCACGGCCAGCGATGCGCTCTGGGCCGGTGTGCCGATCGTCACCTGCGCGGGCGAGACCTTCGCGG CGCGCGTCGCCGCAAGCCTGCTCGACGCCGTGGGCATGCCGGAACTGATCACCACGTCGCTAGCTGACTATGAGGCCCTG GCGCTGGCGCTCGCCCGCGATCCGGAGCGGCTTGCCGGCCTCAAGGCCCGCCTCGTCGAAGCCCGCGCGACGGCACCCTT GTTCGATTCCGAGAAATTCACCCGCGATATCGAGGCCGCCTACCAGCGCATGCACGCGCTGCGCAGCGCCGGCAAGGTGC CGGAACCGATCGTGGTGTGA
Upstream 100 bases:
>100_bases CGCCGTTCACCCTCTGATCCGTTCTTCCGCCGCTTCCTGCGCCGGTGATGGTCCGTTCATAGCCGAGCGCCCCCCGCGCC GCCACGATTCGGCGCCCACA
Downstream 100 bases:
>100_bases GCGGGGACCACTCGTTTCGCGTCGAAAGCCCAAACGAAGAGGGCGTGGTGATCGGAAGATCACCGCGCCCTTTGTGTCTC CGGACCGCGATACGCCGTTA
Product: TPR repeat-containing protein
Products: NA
Alternate protein names: O-Linked N-Acetylglucosamine Transferase; Tetratricopeptide TPR_2 Repeat Protein; TPR Domain-Containing Protein; SPINDLY Family O-Linked N-Acetylglucosamine Transferase; Tetratricopeptide TPR_1 Repeat-Containing Protein; Methyltransferase Type; TPR Repeat Protein; TPR Domain Protein; FkbM Family Methyltransferase; Tetratricopeptide Repeat-Containing Protein; SPY Protein; Glycosyltransferase TPR Domain Protein; Glycosyl Transferase Family Protein; Tetratricopeptide Repeat Domain Protein; Tpr Repeat-Containing Protein; Porphyrin Biosynthesis Protein; Transferase; Tetratricopeptide Repeat Family Protein; Sulfotransferase; TPR Domain/SEC-C Motif Domain Protein; TPR Repeat; O-Linked N-Acetylglucosamine TransferaNDLY Family; Tetratricopeptide Repeat Protein; O-Linked Acetylglucosamine Transferase; Glycosyltransferase TPR Domain-Containing Protein; Methyltransferase Regulatory Domain; Tetratricopeptide Domain Protein; TPR Repeat Domain-Containing Protein; TPR Repeat-Containing Glycosyl Transferase; O-Linked GLCNAC Transferase; Glycosyl Transferase TPR Repeat Protein
Number of amino acids: Translated: 779; Mature: 778
Protein sequence:
>779_residues MPQAALRPRQTSLKQVTGPTSAHWNHPGGTARRAVSMEGNMGKGQRAAFGQPDGGRLKSAKDALRAGTLHQAGDHKGAAQ LYAASLKRDPKNPIVQHMYALCLRQIGRIPEAVAALRISTALDPRNVEALADYGSLLLQMGDRAAAREAFEKALALRPNH PVAKAGIARLSAVDGSLDDLLRTVAEQPGNGQAALALGCAIISSGGEPDDAAKVWVEAVQRGALTPEDIGIEGVNAYRGG RDREALALLKIAATLKPTVAALHANLGMILLEKRRHAEAMEALGEALKVDPNHVGALLNLGSVCLDRKAYPEALAYLNRV LKIEPDNVVARLGAANASRQICQWRNVEQEEAAIAKLLAQSATRTGPFLLLSSHMTPKDHLRAARVWAQGVRVERDDKLP PAPPADPSRRIRIGYLSNDYYNHATTFLAVEMFERHDREKFEIFAYSHSPDDKSDMRRRVVSAFDHFVEIERMSNPEAAR RIRADGIDILVDLKGYTQGARSEIMALRPAPVQVNFLGYPGSMGADFIDYVVGDRFVTPLSAAADYDEKIVQLPHCYQPN DRHRRISETLPSRAACGLPESGFVFCCFNNTYKITPAVFSVWMRLLDEVPDSVLWLYEANAAARDNLAYEAAKFGIEPDR IIFAPNALLADHLARHAHADLFLDTLPYNAHTTASDALWAGVPIVTCAGETFAARVAASLLDAVGMPELITTSLADYEAL ALALARDPERLAGLKARLVEARATAPLFDSEKFTRDIEAAYQRMHALRSAGKVPEPIVV
Sequences:
>Translated_779_residues MPQAALRPRQTSLKQVTGPTSAHWNHPGGTARRAVSMEGNMGKGQRAAFGQPDGGRLKSAKDALRAGTLHQAGDHKGAAQ LYAASLKRDPKNPIVQHMYALCLRQIGRIPEAVAALRISTALDPRNVEALADYGSLLLQMGDRAAAREAFEKALALRPNH PVAKAGIARLSAVDGSLDDLLRTVAEQPGNGQAALALGCAIISSGGEPDDAAKVWVEAVQRGALTPEDIGIEGVNAYRGG RDREALALLKIAATLKPTVAALHANLGMILLEKRRHAEAMEALGEALKVDPNHVGALLNLGSVCLDRKAYPEALAYLNRV LKIEPDNVVARLGAANASRQICQWRNVEQEEAAIAKLLAQSATRTGPFLLLSSHMTPKDHLRAARVWAQGVRVERDDKLP PAPPADPSRRIRIGYLSNDYYNHATTFLAVEMFERHDREKFEIFAYSHSPDDKSDMRRRVVSAFDHFVEIERMSNPEAAR RIRADGIDILVDLKGYTQGARSEIMALRPAPVQVNFLGYPGSMGADFIDYVVGDRFVTPLSAAADYDEKIVQLPHCYQPN DRHRRISETLPSRAACGLPESGFVFCCFNNTYKITPAVFSVWMRLLDEVPDSVLWLYEANAAARDNLAYEAAKFGIEPDR IIFAPNALLADHLARHAHADLFLDTLPYNAHTTASDALWAGVPIVTCAGETFAARVAASLLDAVGMPELITTSLADYEAL ALALARDPERLAGLKARLVEARATAPLFDSEKFTRDIEAAYQRMHALRSAGKVPEPIVV >Mature_778_residues PQAALRPRQTSLKQVTGPTSAHWNHPGGTARRAVSMEGNMGKGQRAAFGQPDGGRLKSAKDALRAGTLHQAGDHKGAAQL YAASLKRDPKNPIVQHMYALCLRQIGRIPEAVAALRISTALDPRNVEALADYGSLLLQMGDRAAAREAFEKALALRPNHP VAKAGIARLSAVDGSLDDLLRTVAEQPGNGQAALALGCAIISSGGEPDDAAKVWVEAVQRGALTPEDIGIEGVNAYRGGR DREALALLKIAATLKPTVAALHANLGMILLEKRRHAEAMEALGEALKVDPNHVGALLNLGSVCLDRKAYPEALAYLNRVL KIEPDNVVARLGAANASRQICQWRNVEQEEAAIAKLLAQSATRTGPFLLLSSHMTPKDHLRAARVWAQGVRVERDDKLPP APPADPSRRIRIGYLSNDYYNHATTFLAVEMFERHDREKFEIFAYSHSPDDKSDMRRRVVSAFDHFVEIERMSNPEAARR IRADGIDILVDLKGYTQGARSEIMALRPAPVQVNFLGYPGSMGADFIDYVVGDRFVTPLSAAADYDEKIVQLPHCYQPND RHRRISETLPSRAACGLPESGFVFCCFNNTYKITPAVFSVWMRLLDEVPDSVLWLYEANAAARDNLAYEAAKFGIEPDRI IFAPNALLADHLARHAHADLFLDTLPYNAHTTASDALWAGVPIVTCAGETFAARVAASLLDAVGMPELITTSLADYEALA LALARDPERLAGLKARLVEARATAPLFDSEKFTRDIEAAYQRMHALRSAGKVPEPIVV
Specific function: Unknown
COG id: COG3914
COG function: function code O; Predicted O-linked N-acetylglucosamine transferase, SPINDLY family
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI32307148, Length=604, Percent_Identity=27.9801324503311, Blast_Score=216, Evalue=6e-56, Organism=Homo sapiens, GI32307150, Length=604, Percent_Identity=27.9801324503311, Blast_Score=216, Evalue=7e-56, Organism=Caenorhabditis elegans, GI115532690, Length=535, Percent_Identity=26.5420560747664, Blast_Score=187, Evalue=1e-47, Organism=Caenorhabditis elegans, GI115532692, Length=535, Percent_Identity=26.5420560747664, Blast_Score=187, Evalue=1e-47, Organism=Drosophila melanogaster, GI17647755, Length=531, Percent_Identity=29.5668549905838, Blast_Score=206, Evalue=3e-53, Organism=Drosophila melanogaster, GI24585827, Length=531, Percent_Identity=29.5668549905838, Blast_Score=206, Evalue=3e-53, Organism=Drosophila melanogaster, GI24585829, Length=531, Percent_Identity=29.5668549905838, Blast_Score=206, Evalue=3e-53,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 84794; Mature: 84662
Theoretical pI: Translated: 7.51; Mature: 7.51
Prosite motif: PS50005 TPR L=RR ; PS50293 TPR_REGION
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPQAALRPRQTSLKQVTGPTSAHWNHPGGTARRAVSMEGNMGKGQRAAFGQPDGGRLKSA CCCCCCCCCHHHHHHHCCCCCCCCCCCCCHHHEEEEECCCCCCCCCCCCCCCCCCCCHHH KDALRAGTLHQAGDHKGAAQLYAASLKRDPKNPIVQHMYALCLRQIGRIPEAVAALRIST HHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHH ALDPRNVEALADYGSLLLQMGDRAAAREAFEKALALRPNHPVAKAGIARLSAVDGSLDDL CCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHH LRTVAEQPGNGQAALALGCAIISSGGEPDDAAKVWVEAVQRGALTPEDIGIEGVNAYRGG HHHHHCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHCCCCCCHHHCCC RDREALALLKIAATLKPTVAALHANLGMILLEKRRHAEAMEALGEALKVDPNHVGALLNL CCHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH GSVCLDRKAYPEALAYLNRVLKIEPDNVVARLGAANASRQICQWRNVEQEEAAIAKLLAQ HHHHHCCCCCHHHHHHHHHHEEECCCHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHH SATRTGPFLLLSSHMTPKDHLRAARVWAQGVRVERDDKLPPAPPADPSRRIRIGYLSNDY HCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEECCCC YNHATTFLAVEMFERHDREKFEIFAYSHSPDDKSDMRRRVVSAFDHFVEIERMSNPEAAR HHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHH RIRADGIDILVDLKGYTQGARSEIMALRPAPVQVNFLGYPGSMGADFIDYVVGDRFVTPL HHHCCCCEEEEEECCCCCCCHHHEEEECCCCEEEEEECCCCCCCHHHHHHHHCCHHCCCH SAAADYDEKIVQLPHCYQPNDRHRRISETLPSRAACGLPESGFVFCCFNNTYKITPAVFS HHHCCHHHHHHCCCCCCCCCHHHHHHHHHCCCHHCCCCCCCCEEEEEECCCEEECHHHHH VWMRLLDEVPDSVLWLYEANAAARDNLAYEAAKFGIEPDRIIFAPNALLADHLARHAHAD HHHHHHHHCCCCEEEEEECCCCHHCCHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHH LFLDTLPYNAHTTASDALWAGVPIVTCAGETFAARVAASLLDAVGMPELITTSLADYEAL HEEECCCCCCCCCCCCHHHCCCCEEEECCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH ALALARDPERLAGLKARLVEARATAPLFDSEKFTRDIEAAYQRMHALRSAGKVPEPIVV HHHHHCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCC >Mature Secondary Structure PQAALRPRQTSLKQVTGPTSAHWNHPGGTARRAVSMEGNMGKGQRAAFGQPDGGRLKSA CCCCCCCCHHHHHHHCCCCCCCCCCCCCHHHEEEEECCCCCCCCCCCCCCCCCCCCHHH KDALRAGTLHQAGDHKGAAQLYAASLKRDPKNPIVQHMYALCLRQIGRIPEAVAALRIST HHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHH ALDPRNVEALADYGSLLLQMGDRAAAREAFEKALALRPNHPVAKAGIARLSAVDGSLDDL CCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHH LRTVAEQPGNGQAALALGCAIISSGGEPDDAAKVWVEAVQRGALTPEDIGIEGVNAYRGG HHHHHCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHCCCCCCHHHCCC RDREALALLKIAATLKPTVAALHANLGMILLEKRRHAEAMEALGEALKVDPNHVGALLNL CCHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH GSVCLDRKAYPEALAYLNRVLKIEPDNVVARLGAANASRQICQWRNVEQEEAAIAKLLAQ HHHHHCCCCCHHHHHHHHHHEEECCCHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHH SATRTGPFLLLSSHMTPKDHLRAARVWAQGVRVERDDKLPPAPPADPSRRIRIGYLSNDY HCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEECCCC YNHATTFLAVEMFERHDREKFEIFAYSHSPDDKSDMRRRVVSAFDHFVEIERMSNPEAAR HHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHH RIRADGIDILVDLKGYTQGARSEIMALRPAPVQVNFLGYPGSMGADFIDYVVGDRFVTPL HHHCCCCEEEEEECCCCCCCHHHEEEECCCCEEEEEECCCCCCCHHHHHHHHCCHHCCCH SAAADYDEKIVQLPHCYQPNDRHRRISETLPSRAACGLPESGFVFCCFNNTYKITPAVFS HHHCCHHHHHHCCCCCCCCCHHHHHHHHHCCCHHCCCCCCCCEEEEEECCCEEECHHHHH VWMRLLDEVPDSVLWLYEANAAARDNLAYEAAKFGIEPDRIIFAPNALLADHLARHAHAD HHHHHHHHCCCCEEEEEECCCCHHCCHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHH LFLDTLPYNAHTTASDALWAGVPIVTCAGETFAARVAASLLDAVGMPELITTSLADYEAL HEEECCCCCCCCCCCCHHHCCCCEEEECCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH ALALARDPERLAGLKARLVEARATAPLFDSEKFTRDIEAAYQRMHALRSAGKVPEPIVV HHHHHCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA