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The map label for this gene is yagA [C]

Identifier: 158424886

GI number: 158424886

Start: 3764377

End: 3765210

Strand: Reverse

Name: yagA [C]

Synonym: AZC_3262

Alternate gene names: 158424886

Gene position: 3765210-3764377 (Counterclockwise)

Preceding gene: 158424887

Following gene: 158424880

Centisome position: 70.12

GC content: 64.87

Gene sequence:

>834_bases
GTGGCCAAGCTCGGCGTATCGGAGCGGCTCGCGTGCCGGGTTCTGGGGCAGCATCGATCCACGCAACGCAAGGTGCCAGT
GGGCCGTGCCGATGAGGCGGGCCTGACCGCGGACATCATCGAACTGGCCACCCGATACGGTCGCTATGGCTATCGGCGGA
TCACGGCATTGCTGCAGGCGTCCGGCTGGGTGGTGAACGTGAAGCGGGTCGAGCGGATCTGGCGGCGGGAGGGGCTCAAA
GTGCCAAGCAAGCAACCGAAGAAGGGGCGCCTGTGGTTCAACGGCGGGTCCTGCCTGCGGCTGCGGCCGGAGCATCCCAA
CCATGTGTGGTCCTATAACTTCGTCGAGGATCGCACCCACAACGGGCGGAAGTTCCGCATGCTGAACGTGATCGACGAGT
TCACACGGGAGTGCCTGGCCATCCGCATTGACCGCAAGCTGAACTCGACCGCGGTCATCGACGTGCTGACGGACCTGTTC
GTGCTGCGGGGCGTGCCCAGCCATATCCGTTCCGACAATGGCCCGGAGTTCATCGCCAAGGCGGTGCGGGACTGGATCAC
GGCCGTCGGGGCCAGGACGGCCTTCATCGCGCCCGGCTCGCCGTGGGAGAATGGCTATTGCGAGAGCTTCAACTCCAAGC
TCCGGGATGAACTGCTCGACGGTGAGATCTTCTACAGCCTGGCCGAGGCGAGGATCGTCATCGAGGACTGGCGCCGGCAC
TACAACACCGAGCGGCCACACTCCGCGCTCGGCTACAAGCCTCCGGCACCGGCCGTTATCGTGCCGCAGGTGCCGCCAAC
ATCAAATGCGCCCAACAGGCCCACAATGCATTAG

Upstream 100 bases:

>100_bases
AGGCGGTTTCGGACCTGACGCTGGAGAAGCTGATCCTGAAGGAAGCCGCGTCGGGAAACTTCTAAGCCCCGCCCGTCGCC
GTCGCTGCATCGCGCACGTC

Downstream 100 bases:

>100_bases
ACACAAGCCGGACCACTCAATAGGGGCAGGTCACGGGTGACGGCGACCAGCGACGGCGGCAAGCTGGCTTGCAGCGTCGC
GATCTCGGCATTGATTGCCG

Product: integrase

Products: NA

Alternate protein names: ORF1 [H]

Number of amino acids: Translated: 277; Mature: 276

Protein sequence:

>277_residues
MAKLGVSERLACRVLGQHRSTQRKVPVGRADEAGLTADIIELATRYGRYGYRRITALLQASGWVVNVKRVERIWRREGLK
VPSKQPKKGRLWFNGGSCLRLRPEHPNHVWSYNFVEDRTHNGRKFRMLNVIDEFTRECLAIRIDRKLNSTAVIDVLTDLF
VLRGVPSHIRSDNGPEFIAKAVRDWITAVGARTAFIAPGSPWENGYCESFNSKLRDELLDGEIFYSLAEARIVIEDWRRH
YNTERPHSALGYKPPAPAVIVPQVPPTSNAPNRPTMH

Sequences:

>Translated_277_residues
MAKLGVSERLACRVLGQHRSTQRKVPVGRADEAGLTADIIELATRYGRYGYRRITALLQASGWVVNVKRVERIWRREGLK
VPSKQPKKGRLWFNGGSCLRLRPEHPNHVWSYNFVEDRTHNGRKFRMLNVIDEFTRECLAIRIDRKLNSTAVIDVLTDLF
VLRGVPSHIRSDNGPEFIAKAVRDWITAVGARTAFIAPGSPWENGYCESFNSKLRDELLDGEIFYSLAEARIVIEDWRRH
YNTERPHSALGYKPPAPAVIVPQVPPTSNAPNRPTMH
>Mature_276_residues
AKLGVSERLACRVLGQHRSTQRKVPVGRADEAGLTADIIELATRYGRYGYRRITALLQASGWVVNVKRVERIWRREGLKV
PSKQPKKGRLWFNGGSCLRLRPEHPNHVWSYNFVEDRTHNGRKFRMLNVIDEFTRECLAIRIDRKLNSTAVIDVLTDLFV
LRGVPSHIRSDNGPEFIAKAVRDWITAVGARTAFIAPGSPWENGYCESFNSKLRDELLDGEIFYSLAEARIVIEDWRRHY
NTERPHSALGYKPPAPAVIVPQVPPTSNAPNRPTMH

Specific function: Unknown

COG id: COG2801

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

Organism=Homo sapiens, GI310129419, Length=183, Percent_Identity=24.5901639344262, Blast_Score=68, Evalue=1e-11,
Organism=Escherichia coli, GI1786462, Length=247, Percent_Identity=26.7206477732794, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1790724, Length=232, Percent_Identity=29.3103448275862, Blast_Score=67, Evalue=9e-13,
Organism=Escherichia coli, GI1789424, Length=232, Percent_Identity=29.3103448275862, Blast_Score=67, Evalue=9e-13,
Organism=Escherichia coli, GI1789224, Length=232, Percent_Identity=29.3103448275862, Blast_Score=67, Evalue=9e-13,
Organism=Escherichia coli, GI1788305, Length=232, Percent_Identity=29.3103448275862, Blast_Score=67, Evalue=9e-13,
Organism=Escherichia coli, GI1787669, Length=232, Percent_Identity=29.3103448275862, Blast_Score=67, Evalue=9e-13,
Organism=Escherichia coli, GI1786558, Length=232, Percent_Identity=29.3103448275862, Blast_Score=67, Evalue=9e-13,
Organism=Escherichia coli, GI1789981, Length=207, Percent_Identity=24.1545893719807, Blast_Score=65, Evalue=6e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001584
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 31589; Mature: 31457

Theoretical pI: Translated: 10.50; Mature: 10.50

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKLGVSERLACRVLGQHRSTQRKVPVGRADEAGLTADIIELATRYGRYGYRRITALLQA
CCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHH
SGWVVNVKRVERIWRREGLKVPSKQPKKGRLWFNGGSCLRLRPEHPNHVWSYNFVEDRTH
CCCEEEHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCEEEECCCCCCCEEEECCHHCCCC
NGRKFRMLNVIDEFTRECLAIRIDRKLNSTAVIDVLTDLFVLRGVPSHIRSDNGPEFIAK
CCCEEEHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHCCCCCHHHHHH
AVRDWITAVGARTAFIAPGSPWENGYCESFNSKLRDELLDGEIFYSLAEARIVIEDWRRH
HHHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
YNTERPHSALGYKPPAPAVIVPQVPPTSNAPNRPTMH
CCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCC
>Mature Secondary Structure 
AKLGVSERLACRVLGQHRSTQRKVPVGRADEAGLTADIIELATRYGRYGYRRITALLQA
CCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHH
SGWVVNVKRVERIWRREGLKVPSKQPKKGRLWFNGGSCLRLRPEHPNHVWSYNFVEDRTH
CCCEEEHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCEEEECCCCCCCEEEECCHHCCCC
NGRKFRMLNVIDEFTRECLAIRIDRKLNSTAVIDVLTDLFVLRGVPSHIRSDNGPEFIAK
CCCEEEHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHCCCCCHHHHHH
AVRDWITAVGARTAFIAPGSPWENGYCESFNSKLRDELLDGEIFYSLAEARIVIEDWRRH
HHHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
YNTERPHSALGYKPPAPAVIVPQVPPTSNAPNRPTMH
CCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1718819 [H]