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The map label for this gene is pvdS [C]

Identifier: 158424866

GI number: 158424866

Start: 3738826

End: 3739473

Strand: Direct

Name: pvdS [C]

Synonym: AZC_3242

Alternate gene names: 158424866

Gene position: 3738826-3739473 (Clockwise)

Preceding gene: 158424865

Following gene: 158424870

Centisome position: 69.63

GC content: 67.59

Gene sequence:

>648_bases
GTGGAGCCTTCGATGTCGACGAAGCCAAAGGACTTGGCTGCGAACGAACTGGTGCGCACCATGATCTGCAACCGCGCCCT
GCTGCTCGGCATTGCGACACGGGTTTTGTCCTCCCGCGAGCTTGCCGAGGACGTCGTGCAGGACGCGGCCCTGCGGGCCT
GCTCCATGGCCAGCCCGGAGATGGGTTCGCCGTTGCGCCTGTCCTGCTGCATGGTTCGCAACCTTGCCATAGACCGGCTG
AGGCGGGGCCAGCTCGAACGCCGCCATCTGGCGCCCGAGACCGAAGCCGAGAGCGTGACGTCTCCCCTTGATGACCCATT
CGGTTCCGTCGCGTGCCGCCAGATCGTCGCTCATGTCCTGCGCGCGCTAGAGGAACTGCCGCGGCGGACTCGATATGCCT
TTCTCCAGCACCGGCTTCACGACGTCCCGCAGAAAGAGATTGCGGCGGCGCTGGGCGTTTCCACGACGCTCGTGAACTTC
ATGATCCGCGATGCCACCGCCCATTGCCGGGCCTACCTGGCTTCGGGCGCCGTGGAGCCCCTGCCCTTCCGGCTGCCAGC
CCCCGCCGGCACCCGGGACGGCAGGAACGGGGCAAAGCCCGCCCCGGTCCGTCTCTCTCTCAAGATCGACCGGCGGACGG
CCGCCTGA

Upstream 100 bases:

>100_bases
ACGGCGTTTATCAACGCCGCCGGCAGCCCTTCGTGCAGGCCCCAGAGCCGCTCCCCGCTGACGGCCAGGAGACCATCAGG
ACACCATTTCATACTCAACC

Downstream 100 bases:

>100_bases
GGGCGGGAGCGCCGCCAGCCGTGGGCCGATCAGCGACGCGCGCCATGGAGCGCCTGCTCGATATCGGCCCAGATCAGCGT
CTCATCCTCCATGCCGGCGC

Product: sigma factor

Products: NA

Alternate protein names: Extracytoplasmic-Function Sigma-70 Factor PvdS; ECF Subfamily RNA Polymerase Sigma-24 Factor; RNA Polymerase Sigma-24 Subunit ECF Subfamily; RNA Polymerase Sigma Factor Sigma-70 Family; RNA Polymerase Sigma Factor; Sigma Factor; Sigma-; FecI-Like Sigma-; RNA Polymerase Sigma-70 Family Protein; Ferric Regulator Sigma-24 Subunit; RNA Polymerase Sigma Factor Protein; Transcriptional Regulator Xre Family; ECF Subfamily RNA Polymerase Sigma Factor

Number of amino acids: Translated: 215; Mature: 215

Protein sequence:

>215_residues
MEPSMSTKPKDLAANELVRTMICNRALLLGIATRVLSSRELAEDVVQDAALRACSMASPEMGSPLRLSCCMVRNLAIDRL
RRGQLERRHLAPETEAESVTSPLDDPFGSVACRQIVAHVLRALEELPRRTRYAFLQHRLHDVPQKEIAAALGVSTTLVNF
MIRDATAHCRAYLASGAVEPLPFRLPAPAGTRDGRNGAKPAPVRLSLKIDRRTAA

Sequences:

>Translated_215_residues
MEPSMSTKPKDLAANELVRTMICNRALLLGIATRVLSSRELAEDVVQDAALRACSMASPEMGSPLRLSCCMVRNLAIDRL
RRGQLERRHLAPETEAESVTSPLDDPFGSVACRQIVAHVLRALEELPRRTRYAFLQHRLHDVPQKEIAAALGVSTTLVNF
MIRDATAHCRAYLASGAVEPLPFRLPAPAGTRDGRNGAKPAPVRLSLKIDRRTAA
>Mature_215_residues
MEPSMSTKPKDLAANELVRTMICNRALLLGIATRVLSSRELAEDVVQDAALRACSMASPEMGSPLRLSCCMVRNLAIDRL
RRGQLERRHLAPETEAESVTSPLDDPFGSVACRQIVAHVLRALEELPRRTRYAFLQHRLHDVPQKEIAAALGVSTTLVNF
MIRDATAHCRAYLASGAVEPLPFRLPAPAGTRDGRNGAKPAPVRLSLKIDRRTAA

Specific function: Sigma Factors Are Initiation Factors That Promote The Attachment Of RNA Polymerase To Specific Initiation Sites And Are Then Released. This Sigma Factor Regulates The Fec Genes For Iron Dicitrate Transport (Probable). [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23568; Mature: 23568

Theoretical pI: Translated: 9.86; Mature: 9.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
6.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEPSMSTKPKDLAANELVRTMICNRALLLGIATRVLSSRELAEDVVQDAALRACSMASPE
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
MGSPLRLSCCMVRNLAIDRLRRGQLERRHLAPETEAESVTSPLDDPFGSVACRQIVAHVL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHH
RALEELPRRTRYAFLQHRLHDVPQKEIAAALGVSTTLVNFMIRDATAHCRAYLASGAVEP
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
LPFRLPAPAGTRDGRNGAKPAPVRLSLKIDRRTAA
CCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCC
>Mature Secondary Structure
MEPSMSTKPKDLAANELVRTMICNRALLLGIATRVLSSRELAEDVVQDAALRACSMASPE
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
MGSPLRLSCCMVRNLAIDRLRRGQLERRHLAPETEAESVTSPLDDPFGSVACRQIVAHVL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHH
RALEELPRRTRYAFLQHRLHDVPQKEIAAALGVSTTLVNFMIRDATAHCRAYLASGAVEP
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
LPFRLPAPAGTRDGRNGAKPAPVRLSLKIDRRTAA
CCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA