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The map label for this gene is stc [H]

Identifier: 158424837

GI number: 158424837

Start: 3677756

End: 3679159

Strand: Direct

Name: stc [H]

Synonym: AZC_3213

Alternate gene names: 158424837

Gene position: 3677756-3679159 (Clockwise)

Preceding gene: 158424831

Following gene: 158424839

Centisome position: 68.49

GC content: 68.59

Gene sequence:

>1404_bases
ATGTCCCTCTCGGCCGAAGAGAGGCTTTCCGCCGCGCGCTCGCTCCTCCAGATGGTGGAGGAGATGATCGACGGCGCCAC
CATCGTCGACCATCGCTCCCGGGTCGTCTGGTTCAGCGCGGGCCAGCTCGCCCTTCTCGGCGGCGTCCGCCTGAGCGATG
TGGTCGGGCAGGATATCGAGCGCGTCATCCCCCACAGCCGCCTCCGGGAAGTGGTGGAGACGGGGCAGCCGCAGCCGCTG
GACATCATCCAGTATGGCGACACGTCGCTGCTGGTGACGCGCCTGCCGCTGCGGGACGAGACCGGCACGATCATCGGCGC
CTTTGCGTTCGCCCTGAAGAACAGCATCCCGCACCTGCGCCCCATTGCTGAGCGTGTCCACCAGTTGCAGTCCCGCCTCG
CCCGCATGGAGCAGGCGCTCTCCACCACACGCTCCCACCGCTACACCAGCGAACAGATTCTCGGAGCCAGCGCCGCCATG
CGGGAGGTGGGACGCCTGCTCCGCCGGGCCGCCGACGTGCGCTCCCCAGTGCTGCTGCTCGGCGAAACGGGCACCGGCAA
GGAGATGATTGCCCATGCGATCCATGCGGCCTCCGGCCGGGTGAACCGGCCTTTCGTCGCCATCAATGTTGCGGCCGTCC
CGGAAAACCTGCTTGAGGCCGAATTCTTCGGCGTCGCGCCGGGCGCCTTTACGGGGGCGGCCCGGCAGCCGCGGCCCGGC
AAGTTCCAGATCGCGCATGAGGGAACGCTGTTCCTCGACGAAATCGGCGACATGCCGCTTGCCCTGCAAGCCAAGCTGCT
CCGCGCCCTTCAGGACGGCGAGGTCGAACCCGTCGGCTCGAACCAGCTTGCCCGTGTCGATGTGCGCGTGATCGCCGCGA
CCAGCCGCCCGCTCGCGGACATGGTGCGGGCCGGCACCTTCCGGCAGGACCTCTATTACCGGCTGAACGTCCTCTCCATC
CGGCTCCCACCCCTGCGCGAACGCGCGGGCGACATCGAGCTGCTGGCCGGCAAGTTCAGTGAACGGATCGCCCAGAGCTT
TGCCGTGGCCTTCCGCCCCCTCTCCCGTGGCGCGCTCGATCTGCTCGAGGCCCACACCTGGCCCGGAAATGTCCGTGAAC
TCGCGAACGTCATCGAGCAGGCCTATGTGCGGAGCGAGAGCGACCGGATCGACGCCGCCGATATCGCCGCGGCGCTCGGG
ATCGAGGCCGAGCCATCGGCAGCCCAGACGCCGCCCTCCACGCGCCTCTCCGATGCGGTCGAGGACCTTGAACGCCGGAT
GATCACGGATGCGCTGCGCCGATGCGGCAACAGGCAGGCGGCTGCCCGCGCACTGGGAATTTCCCGCTCCAATCTCTACG
CCAAGATGCAGCGCCACGGCCTTGGAGAGAGCGGCACCGGGTGA

Upstream 100 bases:

>100_bases
GCCTCCGCGCGTTCATTTCCAACGCCTTCCCGTTGAACACGAGACGTTCTAGATTCTGACAGCTCCGTCCATATTCCGGA
CACTCCCGAAGGAGGCGCCG

Downstream 100 bases:

>100_bases
AGGGACAGCGCCTGCAGCTCGCAGGTAGCCTGAAGTCCGGAACGGCCGTACTTCATGCGCCCGCGGACAGCGCTCGCAGA
TAGCTGCGCCGCAGGTCGGC

Product: sigma-54 factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 467; Mature: 466

Protein sequence:

>467_residues
MSLSAEERLSAARSLLQMVEEMIDGATIVDHRSRVVWFSAGQLALLGGVRLSDVVGQDIERVIPHSRLREVVETGQPQPL
DIIQYGDTSLLVTRLPLRDETGTIIGAFAFALKNSIPHLRPIAERVHQLQSRLARMEQALSTTRSHRYTSEQILGASAAM
REVGRLLRRAADVRSPVLLLGETGTGKEMIAHAIHAASGRVNRPFVAINVAAVPENLLEAEFFGVAPGAFTGAARQPRPG
KFQIAHEGTLFLDEIGDMPLALQAKLLRALQDGEVEPVGSNQLARVDVRVIAATSRPLADMVRAGTFRQDLYYRLNVLSI
RLPPLRERAGDIELLAGKFSERIAQSFAVAFRPLSRGALDLLEAHTWPGNVRELANVIEQAYVRSESDRIDAADIAAALG
IEAEPSAAQTPPSTRLSDAVEDLERRMITDALRRCGNRQAAARALGISRSNLYAKMQRHGLGESGTG

Sequences:

>Translated_467_residues
MSLSAEERLSAARSLLQMVEEMIDGATIVDHRSRVVWFSAGQLALLGGVRLSDVVGQDIERVIPHSRLREVVETGQPQPL
DIIQYGDTSLLVTRLPLRDETGTIIGAFAFALKNSIPHLRPIAERVHQLQSRLARMEQALSTTRSHRYTSEQILGASAAM
REVGRLLRRAADVRSPVLLLGETGTGKEMIAHAIHAASGRVNRPFVAINVAAVPENLLEAEFFGVAPGAFTGAARQPRPG
KFQIAHEGTLFLDEIGDMPLALQAKLLRALQDGEVEPVGSNQLARVDVRVIAATSRPLADMVRAGTFRQDLYYRLNVLSI
RLPPLRERAGDIELLAGKFSERIAQSFAVAFRPLSRGALDLLEAHTWPGNVRELANVIEQAYVRSESDRIDAADIAAALG
IEAEPSAAQTPPSTRLSDAVEDLERRMITDALRRCGNRQAAARALGISRSNLYAKMQRHGLGESGTG
>Mature_466_residues
SLSAEERLSAARSLLQMVEEMIDGATIVDHRSRVVWFSAGQLALLGGVRLSDVVGQDIERVIPHSRLREVVETGQPQPLD
IIQYGDTSLLVTRLPLRDETGTIIGAFAFALKNSIPHLRPIAERVHQLQSRLARMEQALSTTRSHRYTSEQILGASAAMR
EVGRLLRRAADVRSPVLLLGETGTGKEMIAHAIHAASGRVNRPFVAINVAAVPENLLEAEFFGVAPGAFTGAARQPRPGK
FQIAHEGTLFLDEIGDMPLALQAKLLRALQDGEVEPVGSNQLARVDVRVIAATSRPLADMVRAGTFRQDLYYRLNVLSIR
LPPLRERAGDIELLAGKFSERIAQSFAVAFRPLSRGALDLLEAHTWPGNVRELANVIEQAYVRSESDRIDAADIAAALGI
EAEPSAAQTPPSTRLSDAVEDLERRMITDALRRCGNRQAAARALGISRSNLYAKMQRHGLGESGTG

Specific function: Unknown

COG id: COG3829

COG function: function code KT; Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 sigma-54 factor interaction domain [H]

Homologues:

Organism=Escherichia coli, GI1789233, Length=463, Percent_Identity=36.2850971922246, Blast_Score=265, Evalue=4e-72,
Organism=Escherichia coli, GI1788550, Length=364, Percent_Identity=43.6813186813187, Blast_Score=265, Evalue=5e-72,
Organism=Escherichia coli, GI1789087, Length=425, Percent_Identity=41.1764705882353, Blast_Score=251, Evalue=6e-68,
Organism=Escherichia coli, GI1790437, Length=336, Percent_Identity=44.9404761904762, Blast_Score=246, Evalue=3e-66,
Organism=Escherichia coli, GI87082117, Length=324, Percent_Identity=45.0617283950617, Blast_Score=231, Evalue=9e-62,
Organism=Escherichia coli, GI1790299, Length=333, Percent_Identity=41.7417417417417, Blast_Score=225, Evalue=5e-60,
Organism=Escherichia coli, GI87082152, Length=320, Percent_Identity=43.75, Blast_Score=225, Evalue=6e-60,
Organism=Escherichia coli, GI1788905, Length=286, Percent_Identity=46.8531468531469, Blast_Score=224, Evalue=8e-60,
Organism=Escherichia coli, GI1786524, Length=332, Percent_Identity=40.9638554216867, Blast_Score=215, Evalue=6e-57,
Organism=Escherichia coli, GI1787583, Length=313, Percent_Identity=36.4217252396166, Blast_Score=200, Evalue=1e-52,
Organism=Escherichia coli, GI87081872, Length=320, Percent_Identity=37.5, Blast_Score=194, Evalue=8e-51,
Organism=Escherichia coli, GI87081858, Length=296, Percent_Identity=35.472972972973, Blast_Score=152, Evalue=6e-38,
Organism=Escherichia coli, GI1789828, Length=238, Percent_Identity=36.1344537815126, Blast_Score=120, Evalue=2e-28,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR020441
- InterPro:   IPR009057
- InterPro:   IPR002197
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR013767
- InterPro:   IPR002078 [H]

Pfam domain/function: PF02954 HTH_8; PF00989 PAS; PF00158 Sigma54_activat [H]

EC number: NA

Molecular weight: Translated: 50873; Mature: 50742

Theoretical pI: Translated: 8.49; Mature: 8.49

Prosite motif: PS00675 SIGMA54_INTERACT_1 ; PS00676 SIGMA54_INTERACT_2 ; PS00688 SIGMA54_INTERACT_3 ; PS50045 SIGMA54_INTERACT_4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLSAEERLSAARSLLQMVEEMIDGATIVDHRSRVVWFSAGQLALLGGVRLSDVVGQDIE
CCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCEEEEEECCCEEEECCCHHHHHHHHHHH
RVIPHSRLREVVETGQPQPLDIIQYGDTSLLVTRLPLRDETGTIIGAFAFALKNSIPHLR
HHCCHHHHHHHHHCCCCCCEEEEEECCCEEEEEECCCCCCCCHHHHHHHHHHHCCCCCHH
PIAERVHQLQSRLARMEQALSTTRSHRYTSEQILGASAAMREVGRLLRRAADVRSPVLLL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
GETGTGKEMIAHAIHAASGRVNRPFVAINVAAVPENLLEAEFFGVAPGAFTGAARQPRPG
ECCCCCHHHHHHHHHHHCCCCCCCEEEEEEHHCCHHHHHHHHHCCCCCCCCCCCCCCCCC
KFQIAHEGTLFLDEIGDMPLALQAKLLRALQDGEVEPVGSNQLARVDVRVIAATSRPLAD
CEEEEECCCEEHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEEECCCCHHH
MVRAGTFRQDLYYRLNVLSIRLPPLRERAGDIELLAGKFSERIAQSFAVAFRPLSRGALD
HHHHCCHHHHHHHEEEEEEEECCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
LLEAHTWPGNVRELANVIEQAYVRSESDRIDAADIAAALGIEAEPSAAQTPPSTRLSDAV
HHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHH
EDLERRMITDALRRCGNRQAAARALGISRSNLYAKMQRHGLGESGTG
HHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
SLSAEERLSAARSLLQMVEEMIDGATIVDHRSRVVWFSAGQLALLGGVRLSDVVGQDIE
CCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCEEEEEECCCEEEECCCHHHHHHHHHHH
RVIPHSRLREVVETGQPQPLDIIQYGDTSLLVTRLPLRDETGTIIGAFAFALKNSIPHLR
HHCCHHHHHHHHHCCCCCCEEEEEECCCEEEEEECCCCCCCCHHHHHHHHHHHCCCCCHH
PIAERVHQLQSRLARMEQALSTTRSHRYTSEQILGASAAMREVGRLLRRAADVRSPVLLL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
GETGTGKEMIAHAIHAASGRVNRPFVAINVAAVPENLLEAEFFGVAPGAFTGAARQPRPG
ECCCCCHHHHHHHHHHHCCCCCCCEEEEEEHHCCHHHHHHHHHCCCCCCCCCCCCCCCCC
KFQIAHEGTLFLDEIGDMPLALQAKLLRALQDGEVEPVGSNQLARVDVRVIAATSRPLAD
CEEEEECCCEEHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEEECCCCHHH
MVRAGTFRQDLYYRLNVLSIRLPPLRERAGDIELLAGKFSERIAQSFAVAFRPLSRGALD
HHHHCCHHHHHHHEEEEEEEECCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
LLEAHTWPGNVRELANVIEQAYVRSESDRIDAADIAAALGIEAEPSAAQTPPSTRLSDAV
HHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHH
EDLERRMITDALRRCGNRQAAARALGISRSNLYAKMQRHGLGESGTG
HHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA