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The map label for this gene is yqxC [H]

Identifier: 158424732

GI number: 158424732

Start: 3559965

End: 3560789

Strand: Reverse

Name: yqxC [H]

Synonym: AZC_3108

Alternate gene names: 158424732

Gene position: 3560789-3559965 (Counterclockwise)

Preceding gene: 158424735

Following gene: 158424731

Centisome position: 66.31

GC content: 68.48

Gene sequence:

>825_bases
GTGAAGATCCTTTGGCATCAATCCCGTGCGACCGCGCCTCCGTGGCGTCCGCGGGAGCTTTTCGGCAGGGCTTTTGGAAA
AGAAGGGGCCGGTATGGCCGCGCGGGCGCGCATCGACAAGCTGCTGGTGGAGCGCGGGCTGTTCGACAGCCGGGCGCGGG
CGCAGGCGGCTGTCCTTGCGGGGCAGGTGAGCGTCAATGGCGCGGTTGCGAAGAAGCCGGGACAGGAAGTGGACGAGGAT
GCGCAGATCGAGGCGCGCGATCTCCATCCTTATGTGTCGCGCGGCGGACTGAAGCTCGAAGCCGGGCTCGATGCGTTCGG
CTTCGAGGTGAAAGGCAAGCGGGCACTGGATGTTGGCTCCTCCACCGGAGGCTTTACCGACGTGCTGCTCACGCGCGGCG
CCGCCAGCGTCGTGGCCGTGGACGTGGGGCATGACCAGTTCCACCCGCGCCTGCGCGGACGCCCGGAGGTGCGCCTGTTC
GAGGGCACGGACATCCGTCGCCTTGAGCCTGCGCAGGTGGGTGAGCCGGTGGACCTGATCGTCTCCGATGTGAGCTTCAT
CTCGCTGGCGCTGGTGCTGCCGCCAGCGCTCGCCTTCGCGGCAGAGCAGGCCGCCCTCGTGGCGCTGGTGAAGCCTCAGT
TCGAAGCCGGCCCCGCGCATGTGAGGAAGGGCGTGGTGAAGGACGCCGCCATTCATGAGGCGGTCTGTGCCCGTGTGCGA
GGCGAAGTCGAGGGCCTCGGCTGGCGCGTGCTGGGCCTCGCGCCGTCGCCCATCGAGGGCGGGGACGGCAATCGGGAATT
TCTTTTGGGTGCGGTGCGACCGTGA

Upstream 100 bases:

>100_bases
TGATCCTGGTTGAAACGTCTCCGCAGCCTAAAAGGCTCCGCCGCGCGGTTCCGTTTGCCTTGCCCCCGGCCGATCGCATA
TCACGGGCCCGGCCTCGGGT

Downstream 100 bases:

>100_bases
GCGAGATGGAAGTGGAAGTCCTGCGCGTCGGCGCGCAGGGAGATGGGCTCGCGGCCGGCGGCCTGTTCGTGCCTTATGGC
CTGCCGGGGGAGATCATCGC

Product: hemolysin A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 274; Mature: 274

Protein sequence:

>274_residues
MKILWHQSRATAPPWRPRELFGRAFGKEGAGMAARARIDKLLVERGLFDSRARAQAAVLAGQVSVNGAVAKKPGQEVDED
AQIEARDLHPYVSRGGLKLEAGLDAFGFEVKGKRALDVGSSTGGFTDVLLTRGAASVVAVDVGHDQFHPRLRGRPEVRLF
EGTDIRRLEPAQVGEPVDLIVSDVSFISLALVLPPALAFAAEQAALVALVKPQFEAGPAHVRKGVVKDAAIHEAVCARVR
GEVEGLGWRVLGLAPSPIEGGDGNREFLLGAVRP

Sequences:

>Translated_274_residues
MKILWHQSRATAPPWRPRELFGRAFGKEGAGMAARARIDKLLVERGLFDSRARAQAAVLAGQVSVNGAVAKKPGQEVDED
AQIEARDLHPYVSRGGLKLEAGLDAFGFEVKGKRALDVGSSTGGFTDVLLTRGAASVVAVDVGHDQFHPRLRGRPEVRLF
EGTDIRRLEPAQVGEPVDLIVSDVSFISLALVLPPALAFAAEQAALVALVKPQFEAGPAHVRKGVVKDAAIHEAVCARVR
GEVEGLGWRVLGLAPSPIEGGDGNREFLLGAVRP
>Mature_274_residues
MKILWHQSRATAPPWRPRELFGRAFGKEGAGMAARARIDKLLVERGLFDSRARAQAAVLAGQVSVNGAVAKKPGQEVDED
AQIEARDLHPYVSRGGLKLEAGLDAFGFEVKGKRALDVGSSTGGFTDVLLTRGAASVVAVDVGHDQFHPRLRGRPEVRLF
EGTDIRRLEPAQVGEPVDLIVSDVSFISLALVLPPALAFAAEQAALVALVKPQFEAGPAHVRKGVVKDAAIHEAVCARVR
GEVEGLGWRVLGLAPSPIEGGDGNREFLLGAVRP

Specific function: Unknown

COG id: COG1189

COG function: function code J; Predicted rRNA methylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004538
- InterPro:   IPR002877
- InterPro:   IPR002942 [H]

Pfam domain/function: PF01728 FtsJ; PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 29176; Mature: 29176

Theoretical pI: Translated: 9.19; Mature: 9.19

Prosite motif: PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKILWHQSRATAPPWRPRELFGRAFGKEGAGMAARARIDKLLVERGLFDSRARAQAAVLA
CCEEEECCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHE
GQVSVNGAVAKKPGQEVDEDAQIEARDLHPYVSRGGLKLEAGLDAFGFEVKGKRALDVGS
EEEEECCCCCCCCCCCCCCCCCEEHHHCCHHHHCCCEEEECCCCEECEEECCCEEEECCC
STGGFTDVLLTRGAASVVAVDVGHDQFHPRLRGRPEVRLFEGTDIRRLEPAQVGEPVDLI
CCCCHHHHHHHCCCCEEEEEECCCHHCCCCCCCCCCEEEECCCCCCCCCHHHCCCCHHHH
VSDVSFISLALVLPPALAFAAEQAALVALVKPQFEAGPAHVRKGVVKDAAIHEAVCARVR
HHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
GEVEGLGWRVLGLAPSPIEGGDGNREFLLGAVRP
CCCCCCCEEEEECCCCCCCCCCCCCEEEEEECCC
>Mature Secondary Structure
MKILWHQSRATAPPWRPRELFGRAFGKEGAGMAARARIDKLLVERGLFDSRARAQAAVLA
CCEEEECCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHE
GQVSVNGAVAKKPGQEVDEDAQIEARDLHPYVSRGGLKLEAGLDAFGFEVKGKRALDVGS
EEEEECCCCCCCCCCCCCCCCCEEHHHCCHHHHCCCEEEECCCCEECEEECCCEEEECCC
STGGFTDVLLTRGAASVVAVDVGHDQFHPRLRGRPEVRLFEGTDIRRLEPAQVGEPVDLI
CCCCHHHHHHHCCCCEEEEEECCCHHCCCCCCCCCCEEEECCCCCCCCCHHHCCCCHHHH
VSDVSFISLALVLPPALAFAAEQAALVALVKPQFEAGPAHVRKGVVKDAAIHEAVCARVR
HHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
GEVEGLGWRVLGLAPSPIEGGDGNREFLLGAVRP
CCCCCCCEEEEECCCCCCCCCCCCCEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377; 2507400 [H]