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The map label for this gene is secD [H]

Identifier: 158424518

GI number: 158424518

Start: 3305556

End: 3307163

Strand: Reverse

Name: secD [H]

Synonym: AZC_2894

Alternate gene names: 158424518

Gene position: 3307163-3305556 (Counterclockwise)

Preceding gene: 158424519

Following gene: 158424517

Centisome position: 61.59

GC content: 67.97

Gene sequence:

>1608_bases
ATGCTGCACTTCTCCAGGCTGAAGACGGCGCTGATCCTCCTGGTCACAGCGTTCGGAATCCTGTTCGCCGTCCCCAACCT
GCTGCCGGCATCGGTGCTTCAACACCTGCCGTCCTGGCTCGCCAACAGCCGTGTCACGCTCGGCCTCGACCTCCAGGGCG
GCAGCCACATCCTGCTGGAAGTGGATTCCGCTGCCGTGCGCAAGGAGCGTGCGGAACAGGTCCGCGACGACGTGCGACGC
GTGCTGCGGGATGCCAAGATCGGCTACACCGGCCTCGCCATCCGCGACACCACCATCCAGCTGCGCCTGCGTGATCCCAA
CGACACCCAGAACGCCCTGACCGAGCTGCGCAAGCTCGCGACTCCGGTGGTGAACGCCTTCCTCGGCGGGAATACGGGCG
AGAACGACATCACCGTTTCCTCCGGCGCCGACGGCCAGATCACCGTCTCGCTCACCGAAGCCGGCATCAATGCCCGCGTG
CGCTCCGCGGTGGACCAGTCCATCGAGATCATCCGCCGCCGTATCGACCAGCTCGGCACGGTGGAGCCGACCATCCAGCG
CCAGGGCGCCGACCGCATCCTGGTGCAGGTCCCCGGTCTGCAGGACCCCCAGCGCCTGAAGGCGCTGCTCGGCCAGACCG
CCAAGCTGTCGTTCCGCATGGTGGACCAGTCCATGTCGCCGCAGCAGGCGATGGAAGGCCGTCCGCCGCCGGAATCCGAA
GTGCTCCAGTCCGCCGAGGGCGCGCCCTATCTGGTGGAGAAGCAGGTGCGTGTGTCCGGTGAGGACCTCACCGACGCCCA
GCCGGGCTTCGACCAGAATTCCCGCCAGCCCATCGTCACCTTCCGCTTCAACAACAACGGTGCCAAGCGCTTCGCCGCCA
CCACGCAGGAAGCGGTGGGCCGGCCCTTCGCCATCGTGCTGGACAATCAGGTGATCTCCGCGCCGGTGATCCGCGAGCCC
ATCCTCGGCGGCTCGGGCCAGATTTCCGGCAACTTCACCGTCCAGCAGGCCAACGACCTCGCCATCCTGCTGCGCGCTGG
CGCGCTGCCGGCGCCGCTGAAGGTGGTGGAGGAGCGCACCGTGGGTCCGAGCCTCGGCCAGGATTCGATCCAGGCCGGCA
AGACCGCCGCTTATGTCGCCGCGGCTCTCGTCACGGTGTTCATGCTGGCGGTGTACGGCCTCTTCGGCGCCTTCGCGCTG
GTCGCGCTCGCCATCCACATCACCCTGATGTTCGCCCTCCAGTCGCTGCTGGGCGCCACGCTGACCCTGCCGGGCATCGC
GGGCGTGGTGCTGACCATCGGCATGGCCGTGGACTCGAACGTGGTGATCTTCGAGCGCATCCGCGACGAGGCACGCGAGG
GCCGTTCGGCCATCGCCGCCATCGACAAGGGCTTCTCCTTCGCGCTGGGCACCATCCTCGACGCGAACCTCACCTCGCTC
GCGACGGCGGTCATCCTGTTCCTGCTCGGCGGCTCCGGCCCCGTGCGCGGCTTCGCCGTCACCTATATCCTTGGCCTCCT
GACCACCGTCTTCACCGCCTACACGCTGACGCGCCTGATGATCGCGCTGTGGGTGAAGTGGCGGCGTCCGGCCAAGCTGC
CCATCTGA

Upstream 100 bases:

>100_bases
CTGCGCTCCCAGATTGCCGTGGTCCGTTCCAAGGGCGAGCCGGCCAAGGACGAGACGGCGGCCTGACGCCGCCGCCCCCC
GCCAGAACAAGACAGAGACG

Downstream 100 bases:

>100_bases
GAGTGCGCCGCCCATGCCTTTGATCAATTACCTCCCGGCGCATACCAACATCGGCTTCATGCGGCTGCGCCGCGTGACCT
TCCCGCTCTCCGCGCTGATG

Product: preprotein translocase subunit SecD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 535; Mature: 535

Protein sequence:

>535_residues
MLHFSRLKTALILLVTAFGILFAVPNLLPASVLQHLPSWLANSRVTLGLDLQGGSHILLEVDSAAVRKERAEQVRDDVRR
VLRDAKIGYTGLAIRDTTIQLRLRDPNDTQNALTELRKLATPVVNAFLGGNTGENDITVSSGADGQITVSLTEAGINARV
RSAVDQSIEIIRRRIDQLGTVEPTIQRQGADRILVQVPGLQDPQRLKALLGQTAKLSFRMVDQSMSPQQAMEGRPPPESE
VLQSAEGAPYLVEKQVRVSGEDLTDAQPGFDQNSRQPIVTFRFNNNGAKRFAATTQEAVGRPFAIVLDNQVISAPVIREP
ILGGSGQISGNFTVQQANDLAILLRAGALPAPLKVVEERTVGPSLGQDSIQAGKTAAYVAAALVTVFMLAVYGLFGAFAL
VALAIHITLMFALQSLLGATLTLPGIAGVVLTIGMAVDSNVVIFERIRDEAREGRSAIAAIDKGFSFALGTILDANLTSL
ATAVILFLLGGSGPVRGFAVTYILGLLTTVFTAYTLTRLMIALWVKWRRPAKLPI

Sequences:

>Translated_535_residues
MLHFSRLKTALILLVTAFGILFAVPNLLPASVLQHLPSWLANSRVTLGLDLQGGSHILLEVDSAAVRKERAEQVRDDVRR
VLRDAKIGYTGLAIRDTTIQLRLRDPNDTQNALTELRKLATPVVNAFLGGNTGENDITVSSGADGQITVSLTEAGINARV
RSAVDQSIEIIRRRIDQLGTVEPTIQRQGADRILVQVPGLQDPQRLKALLGQTAKLSFRMVDQSMSPQQAMEGRPPPESE
VLQSAEGAPYLVEKQVRVSGEDLTDAQPGFDQNSRQPIVTFRFNNNGAKRFAATTQEAVGRPFAIVLDNQVISAPVIREP
ILGGSGQISGNFTVQQANDLAILLRAGALPAPLKVVEERTVGPSLGQDSIQAGKTAAYVAAALVTVFMLAVYGLFGAFAL
VALAIHITLMFALQSLLGATLTLPGIAGVVLTIGMAVDSNVVIFERIRDEAREGRSAIAAIDKGFSFALGTILDANLTSL
ATAVILFLLGGSGPVRGFAVTYILGLLTTVFTAYTLTRLMIALWVKWRRPAKLPI
>Mature_535_residues
MLHFSRLKTALILLVTAFGILFAVPNLLPASVLQHLPSWLANSRVTLGLDLQGGSHILLEVDSAAVRKERAEQVRDDVRR
VLRDAKIGYTGLAIRDTTIQLRLRDPNDTQNALTELRKLATPVVNAFLGGNTGENDITVSSGADGQITVSLTEAGINARV
RSAVDQSIEIIRRRIDQLGTVEPTIQRQGADRILVQVPGLQDPQRLKALLGQTAKLSFRMVDQSMSPQQAMEGRPPPESE
VLQSAEGAPYLVEKQVRVSGEDLTDAQPGFDQNSRQPIVTFRFNNNGAKRFAATTQEAVGRPFAIVLDNQVISAPVIREP
ILGGSGQISGNFTVQQANDLAILLRAGALPAPLKVVEERTVGPSLGQDSIQAGKTAAYVAAALVTVFMLAVYGLFGAFAL
VALAIHITLMFALQSLLGATLTLPGIAGVVLTIGMAVDSNVVIFERIRDEAREGRSAIAAIDKGFSFALGTILDANLTSL
ATAVILFLLGGSGPVRGFAVTYILGLLTTVFTAYTLTRLMIALWVKWRRPAKLPI

Specific function: Involved in protein export [H]

COG id: COG0342

COG function: function code U; Preprotein translocase subunit SecD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786609, Length=534, Percent_Identity=37.0786516853933, Blast_Score=316, Evalue=2e-87,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001036
- InterPro:   IPR005791
- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 57371; Mature: 57371

Theoretical pI: Translated: 9.93; Mature: 9.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLHFSRLKTALILLVTAFGILFAVPNLLPASVLQHLPSWLANSRVTLGLDLQGGSHILLE
CCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEEECCCCEEEEE
VDSAAVRKERAEQVRDDVRRVLRDAKIGYTGLAIRDTTIQLRLRDPNDTQNALTELRKLA
ECHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEEEECCCCCHHHHHHHHHHHH
TPVVNAFLGGNTGENDITVSSGADGQITVSLTEAGINARVRSAVDQSIEIIRRRIDQLGT
HHHHHHHHCCCCCCCCEEEECCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCC
VEPTIQRQGADRILVQVPGLQDPQRLKALLGQTAKLSFRMVDQSMSPQQAMEGRPPPESE
CCHHHHHCCCCEEEEECCCCCCHHHHHHHHCCHHHHHHEECCCCCCHHHHHCCCCCCHHH
VLQSAEGAPYLVEKQVRVSGEDLTDAQPGFDQNSRQPIVTFRFNNNGAKRFAATTQEAVG
HHHCCCCCCEEEEHHHCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHCC
RPFAIVLDNQVISAPVIREPILGGSGQISGNFTVQQANDLAILLRAGALPAPLKVVEERT
CCEEEEECCCCCCCCHHHCCCCCCCCCCCCCEEEEECCCEEEEEECCCCCCCHHHHHHHC
VGPSLGQDSIQAGKTAAYVAAALVTVFMLAVYGLFGAFALVALAIHITLMFALQSLLGAT
CCCCCCCHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
LTLPGIAGVVLTIGMAVDSNVVIFERIRDEAREGRSAIAAIDKGFSFALGTILDANLTSL
HHCCHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCHHHHH
ATAVILFLLGGSGPVRGFAVTYILGLLTTVFTAYTLTRLMIALWVKWRRPAKLPI
HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MLHFSRLKTALILLVTAFGILFAVPNLLPASVLQHLPSWLANSRVTLGLDLQGGSHILLE
CCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEEECCCCEEEEE
VDSAAVRKERAEQVRDDVRRVLRDAKIGYTGLAIRDTTIQLRLRDPNDTQNALTELRKLA
ECHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEEEECCCCCHHHHHHHHHHHH
TPVVNAFLGGNTGENDITVSSGADGQITVSLTEAGINARVRSAVDQSIEIIRRRIDQLGT
HHHHHHHHCCCCCCCCEEEECCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCC
VEPTIQRQGADRILVQVPGLQDPQRLKALLGQTAKLSFRMVDQSMSPQQAMEGRPPPESE
CCHHHHHCCCCEEEEECCCCCCHHHHHHHHCCHHHHHHEECCCCCCHHHHHCCCCCCHHH
VLQSAEGAPYLVEKQVRVSGEDLTDAQPGFDQNSRQPIVTFRFNNNGAKRFAATTQEAVG
HHHCCCCCCEEEEHHHCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHCC
RPFAIVLDNQVISAPVIREPILGGSGQISGNFTVQQANDLAILLRAGALPAPLKVVEERT
CCEEEEECCCCCCCCHHHCCCCCCCCCCCCCEEEEECCCEEEEEECCCCCCCHHHHHHHC
VGPSLGQDSIQAGKTAAYVAAALVTVFMLAVYGLFGAFALVALAIHITLMFALQSLLGAT
CCCCCCCHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
LTLPGIAGVVLTIGMAVDSNVVIFERIRDEAREGRSAIAAIDKGFSFALGTILDANLTSL
HHCCHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCHHHHH
ATAVILFLLGGSGPVRGFAVTYILGLLTTVFTAYTLTRLMIALWVKWRRPAKLPI
HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA