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The map label for this gene is secF [H]

Identifier: 158424517

GI number: 158424517

Start: 3304577

End: 3305542

Strand: Reverse

Name: secF [H]

Synonym: AZC_2893

Alternate gene names: 158424517

Gene position: 3305542-3304577 (Counterclockwise)

Preceding gene: 158424518

Following gene: 158424516

Centisome position: 61.56

GC content: 65.84

Gene sequence:

>966_bases
ATGCCTTTGATCAATTACCTCCCGGCGCATACCAACATCGGCTTCATGCGGCTGCGCCGCGTGACCTTCCCGCTCTCCGC
GCTGATGACGCTTCTGGCGGTGGCGATGTTCGTCACCGTCGGCTTCAACCTCGGCATCGACTTCCGGGGCGGCACGCTCA
TCGAGGCCCAGTCGTCCCAGCAGGCCGCCGATCTCAGCGTGCTGCGCGAGCAGCTCACCGACAGCGATCTCGGCGATGTG
CAGATCCAGGAATTCGGCTCGGCCCGCGACGTGCTGATCCGCGTCGGGCGGGTGGGCGCCGACGACGCCGGCCAGCAGGC
CATCGTGGACAAGGTGCGTACCGCGCTCGGCCAGGACTTCACCGTCCGCCGCGTGGAGACCGTCGGCCCGAGCGTGTCGT
CCGAGCTGGTCCGCCAGTCCATCCTCGCGCTGGTGCTCGGCGCGGTGGTGGTTCTGATCTATCTGTGGTTCCGCTTCGAG
TGGCAGTTCGCCGTCGGCGCGCTGGTGACCACGGCGCACGACATCTTCGTCACGCTGCTGATCTATTCGGCGCTGGGGAT
CGATTTCGACCTGACGTCGATTGCCGCCATCCTCACCATCATGGGCTATTCGCTCAACGATACGGTGGTGGTGTACGACC
GCATCCGCGAGATGCTGCGCCGCTACAAGAAGATCCCGCTGCCCGAGCTGCTGGACATTGCGGTGAACGCGACCTTCTCG
CGTACCATCATCGTCTCGCTCACCACCTTCCTCGCCACCATGGCGCTCTATCTCTTCGGCGGCGAGGTGCTGCGCGGCTT
CTCGCTGGCCATGGCCGTGGGCGTCATCATCGGCACCTATTCCACCATCTTCGTGGCCGCGCCCATCCTCATCCATCTCG
GCCTGCGCTCGTCCACCGTGGTGGGCAAGGAGGCTGCGGAAGAGGGCGGGGAGAGCAAGGACGCCTCGCGTCCCGCCAAG
GCCTGA

Upstream 100 bases:

>100_bases
ACCACCGTCTTCACCGCCTACACGCTGACGCGCCTGATGATCGCGCTGTGGGTGAAGTGGCGGCGTCCGGCCAAGCTGCC
CATCTGAGAGTGCGCCGCCC

Downstream 100 bases:

>100_bases
GGAGGCGCGCGGCATGGCCGATCCCGACGGTTCGCCCTTCCTGCCCCGGCAGGTGCCGATCGACGGCTACGGCCCGCGCT
TCTTCCACTTCCACAACATG

Product: SecF protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 321; Mature: 320

Protein sequence:

>321_residues
MPLINYLPAHTNIGFMRLRRVTFPLSALMTLLAVAMFVTVGFNLGIDFRGGTLIEAQSSQQAADLSVLREQLTDSDLGDV
QIQEFGSARDVLIRVGRVGADDAGQQAIVDKVRTALGQDFTVRRVETVGPSVSSELVRQSILALVLGAVVVLIYLWFRFE
WQFAVGALVTTAHDIFVTLLIYSALGIDFDLTSIAAILTIMGYSLNDTVVVYDRIREMLRRYKKIPLPELLDIAVNATFS
RTIIVSLTTFLATMALYLFGGEVLRGFSLAMAVGVIIGTYSTIFVAAPILIHLGLRSSTVVGKEAAEEGGESKDASRPAK
A

Sequences:

>Translated_321_residues
MPLINYLPAHTNIGFMRLRRVTFPLSALMTLLAVAMFVTVGFNLGIDFRGGTLIEAQSSQQAADLSVLREQLTDSDLGDV
QIQEFGSARDVLIRVGRVGADDAGQQAIVDKVRTALGQDFTVRRVETVGPSVSSELVRQSILALVLGAVVVLIYLWFRFE
WQFAVGALVTTAHDIFVTLLIYSALGIDFDLTSIAAILTIMGYSLNDTVVVYDRIREMLRRYKKIPLPELLDIAVNATFS
RTIIVSLTTFLATMALYLFGGEVLRGFSLAMAVGVIIGTYSTIFVAAPILIHLGLRSSTVVGKEAAEEGGESKDASRPAK
A
>Mature_320_residues
PLINYLPAHTNIGFMRLRRVTFPLSALMTLLAVAMFVTVGFNLGIDFRGGTLIEAQSSQQAADLSVLREQLTDSDLGDVQ
IQEFGSARDVLIRVGRVGADDAGQQAIVDKVRTALGQDFTVRRVETVGPSVSSELVRQSILALVLGAVVVLIYLWFRFEW
QFAVGALVTTAHDIFVTLLIYSALGIDFDLTSIAAILTIMGYSLNDTVVVYDRIREMLRRYKKIPLPELLDIAVNATFSR
TIIVSLTTFLATMALYLFGGEVLRGFSLAMAVGVIIGTYSTIFVAAPILIHLGLRSSTVVGKEAAEEGGESKDASRPAKA

Specific function: Involved in protein export [H]

COG id: COG0341

COG function: function code U; Preprotein translocase subunit SecF

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786610, Length=301, Percent_Identity=36.8770764119601, Blast_Score=222, Evalue=3e-59,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005791
- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645
- InterPro:   IPR005665 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 34865; Mature: 34734

Theoretical pI: Translated: 5.78; Mature: 5.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPLINYLPAHTNIGFMRLRRVTFPLSALMTLLAVAMFVTVGFNLGIDFRGGTLIEAQSSQ
CCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCEEECCCEEEECCCCH
QAADLSVLREQLTDSDLGDVQIQEFGSARDVLIRVGRVGADDAGQQAIVDKVRTALGQDF
HHHHHHHHHHHHCCCCCCCCHHHHHCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCC
TVRRVETVGPSVSSELVRQSILALVLGAVVVLIYLWFRFEWQFAVGALVTTAHDIFVTLL
EEEHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IYSALGIDFDLTSIAAILTIMGYSLNDTVVVYDRIREMLRRYKKIPLPELLDIAVNATFS
HHHHHCCCCCHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHCCCCHHHHHHHHCCHHH
RTIIVSLTTFLATMALYLFGGEVLRGFSLAMAVGVIIGTYSTIFVAAPILIHLGLRSSTV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
VGKEAAEEGGESKDASRPAKA
CCHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure 
PLINYLPAHTNIGFMRLRRVTFPLSALMTLLAVAMFVTVGFNLGIDFRGGTLIEAQSSQ
CCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCEEECCCEEEECCCCH
QAADLSVLREQLTDSDLGDVQIQEFGSARDVLIRVGRVGADDAGQQAIVDKVRTALGQDF
HHHHHHHHHHHHCCCCCCCCHHHHHCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCC
TVRRVETVGPSVSSELVRQSILALVLGAVVVLIYLWFRFEWQFAVGALVTTAHDIFVTLL
EEEHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IYSALGIDFDLTSIAAILTIMGYSLNDTVVVYDRIREMLRRYKKIPLPELLDIAVNATFS
HHHHHCCCCCHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHCCCCHHHHHHHHCCHHH
RTIIVSLTTFLATMALYLFGGEVLRGFSLAMAVGVIIGTYSTIFVAAPILIHLGLRSSTV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
VGKEAAEEGGESKDASRPAKA
CCHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9826342 [H]