| Definition | Azorhizobium caulinodans ORS 571, complete genome. |
|---|---|
| Accession | NC_009937 |
| Length | 5,369,772 |
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The map label for this gene is yyaJ [H]
Identifier: 158424482
GI number: 158424482
Start: 3254628
End: 3256130
Strand: Direct
Name: yyaJ [H]
Synonym: AZC_2858
Alternate gene names: 158424482
Gene position: 3254628-3256130 (Clockwise)
Preceding gene: 158424481
Following gene: 158424483
Centisome position: 60.61
GC content: 66.67
Gene sequence:
>1503_bases GTGCCGGATCGGCCCGCACGGGCCGGTCCGGCGCAGCTCGCCGACATTCCGGAGGACCCCGCAGGTCCCCGGCAAAAAGA AAAGACGACACCCGTTCCTGGAGGAAAGCCCATGCTGATGCAGAGGCCCCGCGACATTGCGCGCGGGCAGACCCCATCGC TCGACCGGCAGGCGGATATCAGCGCCCGGCTGGAACGCCTGCCCATCACCCGCCGCGTCTTCTGGACCCGCAACATCATC GGTGCGGCCACCTTCTTTGATGGCTACACCGTCATCGCCATCGCCTATGCAATGCCCGTTCTTGTCCGCGAATGGGGCCT CAAGCCCGAGCAGACGGGCATGATCCTGTCCATGGGCTATCTCGGCCAGCTCATCGGCGCGGTGTTCTTCGGCTGGCTGG CCGAGCGCATAGGCCGCCTCAGCGTGCTGCTTTTCACTATCCTGCTGTTCGTCAGCATGGATGTCGCCTGCCTGTTCGCC TGGGGCGCCGGTTCGATGATGCTCTTCCGCTTCATCCAAGGCATCGGCACCGGCGGCGAGGTGCCGGTGGCGAGCGCCTA CATCAACGAATACATCGGCTCGAAGGGGCGCGGCCGCTTCTTCCTGCTCTATGAGGTCATGTTCCTCTTCGGCCTCGTGG GCGCGGGCCTCATCGCGCGGGCGCTGGTGCCGGTCTATGGCTGGGAGGCCATGTTCCTCGTCGGGCTCGTGCCGGCCGCC ATCCTGATCCCGCTGCGCTTCTTCATGAAGGAATCTCCGCGCTGGCTGGCAGCGAAGGGCCGTTACGAGGAAGCCGACCG GATCGTGAGCGATCTGGAGCGCAGCGCCGAGGCCGCGGGCCACAAGCTCGCGATGCCGCAGCCGGTTCCCATGAAGCAGA GCGAACAGGGCGGCCTCAGGGAGCTGTTCTCCGGCATCTATCGCCGGCGCACGCTGACCATCTGGTCCATGTGGTTCTGC TCATATCTGGTGGCGAACGGCATGATCGCCTGGCTGCCGACGCTCTATCGCCAGACCTTCAACCTGCCGCTGGAAACCGC CCTGCTGTACGGCCTGCTGACGTCGGTCGCCGGCGTGGTGGCCTCCATCGCCTGCGCCCTGCTGATCGACAAGGTGGGCC GCAAGCGCTGGTACACGGCCGCCTTCCTCTGCGCGCCGCTGCCGCTTCTGGCGCTGGCCTACATGGGCGCCACCTCGCCG ATGGAAGTCCTCCTGCTGGCCGGGCTCGCCTATGCCATCGTGCAGACCATCACCTTCTCGCTCTATCTCTACTCGGCCGA GCTCTATCCGACGCGCCTGCGGGCGCTGGGCACCGGGCTCGGGAGCGCCTGGCTGCGGCTCGGCTCGTCGGCCGGCCCCA TCGTCGTCGGCACCATCATGGGCGCGGCGGGCATCCAGTATGTGTTCGCGGCCTTCGCCGGGGTTCTGGTCATCGGGGCG CTGGTGACCATGCTCTTCGCCATCGAGACGAAGGGCCGTGTGCTGGAGGAACTGTCTCCATAA
Upstream 100 bases:
>100_bases CCGCGCCGCCGTGAAGGCCGCCGGCATCGAAGTGGTGTCGAACGCCATCGCGGCCTGACCCCGAGGCGCGCCAACGCCTC GCTGATTTGGGGAAGAGGGA
Downstream 100 bases:
>100_bases GGAGCCAGACGGGACGCGCCGGGGCGGTTCAGCCCGCCCGGCGCCGGCCCTGATGGCCAGCGAAGCGCCCCCTTTCGCAA ACCTCACCTCCGCAAGACGT
Product: permeases
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 500; Mature: 499
Protein sequence:
>500_residues MPDRPARAGPAQLADIPEDPAGPRQKEKTTPVPGGKPMLMQRPRDIARGQTPSLDRQADISARLERLPITRRVFWTRNII GAATFFDGYTVIAIAYAMPVLVREWGLKPEQTGMILSMGYLGQLIGAVFFGWLAERIGRLSVLLFTILLFVSMDVACLFA WGAGSMMLFRFIQGIGTGGEVPVASAYINEYIGSKGRGRFFLLYEVMFLFGLVGAGLIARALVPVYGWEAMFLVGLVPAA ILIPLRFFMKESPRWLAAKGRYEEADRIVSDLERSAEAAGHKLAMPQPVPMKQSEQGGLRELFSGIYRRRTLTIWSMWFC SYLVANGMIAWLPTLYRQTFNLPLETALLYGLLTSVAGVVASIACALLIDKVGRKRWYTAAFLCAPLPLLALAYMGATSP MEVLLLAGLAYAIVQTITFSLYLYSAELYPTRLRALGTGLGSAWLRLGSSAGPIVVGTIMGAAGIQYVFAAFAGVLVIGA LVTMLFAIETKGRVLEELSP
Sequences:
>Translated_500_residues MPDRPARAGPAQLADIPEDPAGPRQKEKTTPVPGGKPMLMQRPRDIARGQTPSLDRQADISARLERLPITRRVFWTRNII GAATFFDGYTVIAIAYAMPVLVREWGLKPEQTGMILSMGYLGQLIGAVFFGWLAERIGRLSVLLFTILLFVSMDVACLFA WGAGSMMLFRFIQGIGTGGEVPVASAYINEYIGSKGRGRFFLLYEVMFLFGLVGAGLIARALVPVYGWEAMFLVGLVPAA ILIPLRFFMKESPRWLAAKGRYEEADRIVSDLERSAEAAGHKLAMPQPVPMKQSEQGGLRELFSGIYRRRTLTIWSMWFC SYLVANGMIAWLPTLYRQTFNLPLETALLYGLLTSVAGVVASIACALLIDKVGRKRWYTAAFLCAPLPLLALAYMGATSP MEVLLLAGLAYAIVQTITFSLYLYSAELYPTRLRALGTGLGSAWLRLGSSAGPIVVGTIMGAAGIQYVFAAFAGVLVIGA LVTMLFAIETKGRVLEELSP >Mature_499_residues PDRPARAGPAQLADIPEDPAGPRQKEKTTPVPGGKPMLMQRPRDIARGQTPSLDRQADISARLERLPITRRVFWTRNIIG AATFFDGYTVIAIAYAMPVLVREWGLKPEQTGMILSMGYLGQLIGAVFFGWLAERIGRLSVLLFTILLFVSMDVACLFAW GAGSMMLFRFIQGIGTGGEVPVASAYINEYIGSKGRGRFFLLYEVMFLFGLVGAGLIARALVPVYGWEAMFLVGLVPAAI LIPLRFFMKESPRWLAAKGRYEEADRIVSDLERSAEAAGHKLAMPQPVPMKQSEQGGLRELFSGIYRRRTLTIWSMWFCS YLVANGMIAWLPTLYRQTFNLPLETALLYGLLTSVAGVVASIACALLIDKVGRKRWYTAAFLCAPLPLLALAYMGATSPM EVLLLAGLAYAIVQTITFSLYLYSAELYPTRLRALGTGLGSAWLRLGSSAGPIVVGTIMGAAGIQYVFAAFAGVLVIGAL VTMLFAIETKGRVLEELSP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family [H]
Homologues:
Organism=Homo sapiens, GI24308167, Length=443, Percent_Identity=25.5079006772009, Blast_Score=132, Evalue=7e-31, Organism=Homo sapiens, GI213021148, Length=456, Percent_Identity=25.6578947368421, Blast_Score=112, Evalue=8e-25, Organism=Homo sapiens, GI166064021, Length=415, Percent_Identity=27.4698795180723, Blast_Score=100, Evalue=5e-21, Organism=Homo sapiens, GI7662270, Length=303, Percent_Identity=26.4026402640264, Blast_Score=99, Evalue=8e-21, Organism=Homo sapiens, GI4506999, Length=476, Percent_Identity=25, Blast_Score=96, Evalue=7e-20, Organism=Homo sapiens, GI31542327, Length=377, Percent_Identity=27.8514588859416, Blast_Score=96, Evalue=7e-20, Organism=Homo sapiens, GI216548223, Length=304, Percent_Identity=25.3289473684211, Blast_Score=92, Evalue=9e-19, Organism=Homo sapiens, GI302148518, Length=449, Percent_Identity=24.4988864142539, Blast_Score=91, Evalue=2e-18, Organism=Homo sapiens, GI4507005, Length=386, Percent_Identity=26.9430051813472, Blast_Score=89, Evalue=1e-17, Organism=Homo sapiens, GI23510410, Length=322, Percent_Identity=25.4658385093168, Blast_Score=85, Evalue=2e-16, Organism=Homo sapiens, GI11415038, Length=408, Percent_Identity=25.4901960784314, Blast_Score=83, Evalue=6e-16, Organism=Homo sapiens, GI262399383, Length=262, Percent_Identity=26.7175572519084, Blast_Score=82, Evalue=1e-15, Organism=Homo sapiens, GI166197673, Length=359, Percent_Identity=26.4623955431755, Blast_Score=81, Evalue=2e-15, Organism=Homo sapiens, GI24497490, Length=428, Percent_Identity=24.7663551401869, Blast_Score=80, Evalue=4e-15, Organism=Homo sapiens, GI24497476, Length=372, Percent_Identity=24.7311827956989, Blast_Score=77, Evalue=6e-14, Organism=Homo sapiens, GI20070188, Length=372, Percent_Identity=24.7311827956989, Blast_Score=76, Evalue=6e-14, Organism=Homo sapiens, GI73695465, Length=257, Percent_Identity=25.6809338521401, Blast_Score=75, Evalue=2e-13, Organism=Homo sapiens, GI8923870, Length=401, Percent_Identity=25.1870324189526, Blast_Score=66, Evalue=9e-11, Organism=Escherichia coli, GI87082159, Length=438, Percent_Identity=27.3972602739726, Blast_Score=119, Evalue=6e-28, Organism=Escherichia coli, GI1786229, Length=420, Percent_Identity=24.7619047619048, Blast_Score=115, Evalue=7e-27, Organism=Escherichia coli, GI1789207, Length=431, Percent_Identity=25.9860788863109, Blast_Score=103, Evalue=2e-23, Organism=Escherichia coli, GI1788068, Length=463, Percent_Identity=24.8380129589633, Blast_Score=103, Evalue=3e-23, Organism=Escherichia coli, GI1788074, Length=455, Percent_Identity=24.6153846153846, Blast_Score=92, Evalue=5e-20, Organism=Escherichia coli, GI1789312, Length=430, Percent_Identity=25.3488372093023, Blast_Score=91, Evalue=2e-19, Organism=Escherichia coli, GI87081723, Length=393, Percent_Identity=29.0076335877863, Blast_Score=90, Evalue=4e-19, Organism=Escherichia coli, GI87082231, Length=447, Percent_Identity=23.489932885906, Blast_Score=78, Evalue=2e-15, Organism=Escherichia coli, GI87082404, Length=418, Percent_Identity=22.9665071770335, Blast_Score=73, Evalue=5e-14, Organism=Escherichia coli, GI1790463, Length=425, Percent_Identity=24.4705882352941, Blast_Score=70, Evalue=4e-13, Organism=Caenorhabditis elegans, GI32564663, Length=463, Percent_Identity=23.5421166306695, Blast_Score=115, Evalue=4e-26, Organism=Caenorhabditis elegans, GI71989531, Length=356, Percent_Identity=25, Blast_Score=80, Evalue=2e-15, Organism=Caenorhabditis elegans, GI71989525, Length=356, Percent_Identity=25, Blast_Score=80, Evalue=2e-15, Organism=Caenorhabditis elegans, GI71986689, Length=357, Percent_Identity=21.8487394957983, Blast_Score=78, Evalue=9e-15, Organism=Caenorhabditis elegans, GI193202825, Length=357, Percent_Identity=21.8487394957983, Blast_Score=78, Evalue=1e-14, Organism=Caenorhabditis elegans, GI17565978, Length=326, Percent_Identity=26.0736196319018, Blast_Score=75, Evalue=9e-14, Organism=Caenorhabditis elegans, GI17560496, Length=403, Percent_Identity=24.317617866005, Blast_Score=74, Evalue=2e-13, Organism=Caenorhabditis elegans, GI71996338, Length=452, Percent_Identity=22.5663716814159, Blast_Score=68, Evalue=9e-12, Organism=Saccharomyces cerevisiae, GI6320745, Length=411, Percent_Identity=25.3041362530414, Blast_Score=72, Evalue=3e-13, Organism=Drosophila melanogaster, GI19922616, Length=515, Percent_Identity=25.0485436893204, Blast_Score=107, Evalue=2e-23, Organism=Drosophila melanogaster, GI19922874, Length=412, Percent_Identity=24.0291262135922, Blast_Score=99, Evalue=8e-21, Organism=Drosophila melanogaster, GI24640198, Length=479, Percent_Identity=22.964509394572, Blast_Score=93, Evalue=5e-19, Organism=Drosophila melanogaster, GI24640196, Length=479, Percent_Identity=22.964509394572, Blast_Score=93, Evalue=5e-19, Organism=Drosophila melanogaster, GI24640200, Length=479, Percent_Identity=22.964509394572, Blast_Score=93, Evalue=5e-19, Organism=Drosophila melanogaster, GI21355657, Length=358, Percent_Identity=27.9329608938547, Blast_Score=83, Evalue=4e-16, Organism=Drosophila melanogaster, GI62484254, Length=386, Percent_Identity=25.1295336787565, Blast_Score=80, Evalue=3e-15, Organism=Drosophila melanogaster, GI24668440, Length=406, Percent_Identity=25.1231527093596, Blast_Score=79, Evalue=7e-15, Organism=Drosophila melanogaster, GI19922134, Length=436, Percent_Identity=26.3761467889908, Blast_Score=77, Evalue=3e-14, Organism=Drosophila melanogaster, GI24649622, Length=432, Percent_Identity=24.0740740740741, Blast_Score=75, Evalue=1e-13, Organism=Drosophila melanogaster, GI28573099, Length=300, Percent_Identity=22.3333333333333, Blast_Score=73, Evalue=4e-13, Organism=Drosophila melanogaster, GI28573101, Length=300, Percent_Identity=22.3333333333333, Blast_Score=73, Evalue=4e-13, Organism=Drosophila melanogaster, GI21357295, Length=272, Percent_Identity=26.4705882352941, Blast_Score=70, Evalue=4e-12, Organism=Drosophila melanogaster, GI161078056, Length=272, Percent_Identity=26.4705882352941, Blast_Score=70, Evalue=5e-12, Organism=Drosophila melanogaster, GI161077756, Length=429, Percent_Identity=22.3776223776224, Blast_Score=69, Evalue=9e-12, Organism=Drosophila melanogaster, GI28573097, Length=224, Percent_Identity=25.4464285714286, Blast_Score=68, Evalue=1e-11, Organism=Drosophila melanogaster, GI17737451, Length=432, Percent_Identity=26.1574074074074, Blast_Score=68, Evalue=1e-11, Organism=Drosophila melanogaster, GI24652312, Length=432, Percent_Identity=26.1574074074074, Blast_Score=68, Evalue=1e-11, Organism=Drosophila melanogaster, GI24649618, Length=372, Percent_Identity=23.9247311827957, Blast_Score=67, Evalue=3e-11, Organism=Drosophila melanogaster, GI45549297, Length=472, Percent_Identity=22.6694915254237, Blast_Score=66, Evalue=5e-11, Organism=Drosophila melanogaster, GI24649616, Length=386, Percent_Identity=25.1295336787565, Blast_Score=65, Evalue=7e-11, Organism=Drosophila melanogaster, GI161078338, Length=358, Percent_Identity=27.6536312849162, Blast_Score=65, Evalue=8e-11, Organism=Drosophila melanogaster, GI24647365, Length=358, Percent_Identity=27.6536312849162, Blast_Score=65, Evalue=9e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020846 - InterPro: IPR016196 - InterPro: IPR005828 [H]
Pfam domain/function: PF00083 Sugar_tr [H]
EC number: NA
Molecular weight: Translated: 54633; Mature: 54502
Theoretical pI: Translated: 9.86; Mature: 9.86
Prosite motif: PS50850 MFS ; PS00217 SUGAR_TRANSPORT_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 4.0 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPDRPARAGPAQLADIPEDPAGPRQKEKTTPVPGGKPMLMQRPRDIARGQTPSLDRQADI CCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCHHHHCCCCCCCCCHHHH SARLERLPITRRVFWTRNIIGAATFFDGYTVIAIAYAMPVLVREWGLKPEQTGMILSMGY HHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEHHH LGQLIGAVFFGWLAERIGRLSVLLFTILLFVSMDVACLFAWGAGSMMLFRFIQGIGTGGE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCC VPVASAYINEYIGSKGRGRFFLLYEVMFLFGLVGAGLIARALVPVYGWEAMFLVGLVPAA CCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ILIPLRFFMKESPRWLAAKGRYEEADRIVSDLERSAEAAGHKLAMPQPVPMKQSEQGGLR HHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHH ELFSGIYRRRTLTIWSMWFCSYLVANGMIAWLPTLYRQTFNLPLETALLYGLLTSVAGVV HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH ASIACALLIDKVGRKRWYTAAFLCAPLPLLALAYMGATSPMEVLLLAGLAYAIVQTITFS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH LYLYSAELYPTRLRALGTGLGSAWLRLGSSAGPIVVGTIMGAAGIQYVFAAFAGVLVIGA HHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHH LVTMLFAIETKGRVLEELSP HHHHHHHHHHCCHHHHHCCC >Mature Secondary Structure PDRPARAGPAQLADIPEDPAGPRQKEKTTPVPGGKPMLMQRPRDIARGQTPSLDRQADI CCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCHHHHCCCCCCCCCHHHH SARLERLPITRRVFWTRNIIGAATFFDGYTVIAIAYAMPVLVREWGLKPEQTGMILSMGY HHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEHHH LGQLIGAVFFGWLAERIGRLSVLLFTILLFVSMDVACLFAWGAGSMMLFRFIQGIGTGGE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCC VPVASAYINEYIGSKGRGRFFLLYEVMFLFGLVGAGLIARALVPVYGWEAMFLVGLVPAA CCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ILIPLRFFMKESPRWLAAKGRYEEADRIVSDLERSAEAAGHKLAMPQPVPMKQSEQGGLR HHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHH ELFSGIYRRRTLTIWSMWFCSYLVANGMIAWLPTLYRQTFNLPLETALLYGLLTSVAGVV HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH ASIACALLIDKVGRKRWYTAAFLCAPLPLLALAYMGATSPMEVLLLAGLAYAIVQTITFS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH LYLYSAELYPTRLRALGTGLGSAWLRLGSSAGPIVVGTIMGAAGIQYVFAAFAGVLVIGA HHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHH LVTMLFAIETKGRVLEELSP HHHHHHHHHHCCHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7584024; 8011666; 9384377 [H]