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The map label for this gene is nodB [H]

Identifier: 158424460

GI number: 158424460

Start: 3229915

End: 3230769

Strand: Direct

Name: nodB [H]

Synonym: AZC_2836

Alternate gene names: 158424460

Gene position: 3229915-3230769 (Clockwise)

Preceding gene: 158424455

Following gene: 158424461

Centisome position: 60.15

GC content: 69.12

Gene sequence:

>855_bases
ATGCCCTTACAGGAGCCGCACGGCATGCCCGCCAGCAATGTAAGTCGCACCTGCGTCCTTCTCGCCACGGTTCTGGCGGC
CGTGCTCTCGTTCGCGCCCGCTCGGCCCGCATCCGCGGCGTCGGCGGCCGCCGCCTGCCCCGGCCGACCGGATGCGCTCG
GCACCACGCGCGTGATCGAGGTGCCGGCGGGGGTGCAGGTGGGCACCAAGTCCTTCCCCCAGACCCTGCCGCTGGAGAAG
GGCGAGGTGGTGCTGACCTTCGATGACGGCCCCTGGCCGCACACCACCGCCGCCATTCTCGACGCCCTGAAGGCCGAATG
CGTGAAGGCGACCTTCTTTCTCATCGGCGAGAACGCCCGAGCCCGGCCCGAACTGGTGAAGCGGGAGATCGCCGAAGGAC
ACACGGTCGCCCACCACTCCATGACCCATCCCGATGCGACGCTCGCCAAGCTGCCCTTCCCTGCCGCGATGGCGGAGGTC
ACGAAGGGCATGGCGGCGGACGATCTCGCCGCCTATGGCAGCGCCGGATCGGCCGAGCAGCTGGCACCGCGTGTGCCCTT
CTTCCGCTTTCCCGGCTTTGCTTCCACCCCCGAGTTGCTGGAAGCGCTCCGGGCCCGCGGTGTCTCCGTCTTCGGAGCGG
ACTTCTGGGCGTCCGACTGGAACAAGATGACGCCGGAGCAGGAACTCGCCCTCGTCCTGCAGCGCCTCGACGCGACCGGC
GGCGGCATCGTGCTCTTCCACGACACGAAAGCACAGACGGCGGCCATGATTCCGGCGTTCTTGCGGGCTTTAGCTCAGCG
TGGCTACCGCGTGGTCCACATGGTTCCCGCCCGCCAGCGCGCGACCGAACGTTAG

Upstream 100 bases:

>100_bases
CCTGCCTATCGACGGACAGGAGCGGTCGGTTCCACGGTCAGGACCATGATTCCGCACTGCAACGGCTCTAAGGGGCGGGC
GCGGACAAGGCAACGGGCCC

Downstream 100 bases:

>100_bases
CTTGTCTCCACCGCCCGCAGGCGCAGAACCTGCGGACGCGGAAGCGCCACGGGCCGTTCGCAACGGGCGGCCCCGTCTTC
AGAAGCGGCGTCGCCGTCCG

Product: polysaccharide deacetylase

Products: NA

Alternate protein names: Nodulation protein B [H]

Number of amino acids: Translated: 284; Mature: 283

Protein sequence:

>284_residues
MPLQEPHGMPASNVSRTCVLLATVLAAVLSFAPARPASAASAAAACPGRPDALGTTRVIEVPAGVQVGTKSFPQTLPLEK
GEVVLTFDDGPWPHTTAAILDALKAECVKATFFLIGENARARPELVKREIAEGHTVAHHSMTHPDATLAKLPFPAAMAEV
TKGMAADDLAAYGSAGSAEQLAPRVPFFRFPGFASTPELLEALRARGVSVFGADFWASDWNKMTPEQELALVLQRLDATG
GGIVLFHDTKAQTAAMIPAFLRALAQRGYRVVHMVPARQRATER

Sequences:

>Translated_284_residues
MPLQEPHGMPASNVSRTCVLLATVLAAVLSFAPARPASAASAAAACPGRPDALGTTRVIEVPAGVQVGTKSFPQTLPLEK
GEVVLTFDDGPWPHTTAAILDALKAECVKATFFLIGENARARPELVKREIAEGHTVAHHSMTHPDATLAKLPFPAAMAEV
TKGMAADDLAAYGSAGSAEQLAPRVPFFRFPGFASTPELLEALRARGVSVFGADFWASDWNKMTPEQELALVLQRLDATG
GGIVLFHDTKAQTAAMIPAFLRALAQRGYRVVHMVPARQRATER
>Mature_283_residues
PLQEPHGMPASNVSRTCVLLATVLAAVLSFAPARPASAASAAAACPGRPDALGTTRVIEVPAGVQVGTKSFPQTLPLEKG
EVVLTFDDGPWPHTTAAILDALKAECVKATFFLIGENARARPELVKREIAEGHTVAHHSMTHPDATLAKLPFPAAMAEVT
KGMAADDLAAYGSAGSAEQLAPRVPFFRFPGFASTPELLEALRARGVSVFGADFWASDWNKMTPEQELALVLQRLDATGG
GIVLFHDTKAQTAAMIPAFLRALAQRGYRVVHMVPARQRATER

Specific function: Is involved in generating a small heat-stable compound (Nod), an acylated oligomer of N-acetylglucosamine, that stimulates mitosis in various plant protoplasts [H]

COG id: COG0726

COG function: function code G; Predicted xylanase/chitin deacetylase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide deacetylase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011330
- InterPro:   IPR002509 [H]

Pfam domain/function: PF01522 Polysacc_deac_1 [H]

EC number: NA

Molecular weight: Translated: 30137; Mature: 30006

Theoretical pI: Translated: 7.67; Mature: 7.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPLQEPHGMPASNVSRTCVLLATVLAAVLSFAPARPASAASAAAACPGRPDALGTTRVIE
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCCCCCEEEEE
VPAGVQVGTKSFPQTLPLEKGEVVLTFDDGPWPHTTAAILDALKAECVKATFFLIGENAR
CCCCCEECCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHEEEECCCCC
ARPELVKREIAEGHTVAHHSMTHPDATLAKLPFPAAMAEVTKGMAADDLAAYGSAGSAEQ
CCHHHHHHHHHCCCEEECCCCCCCCCHHHHCCCHHHHHHHHCCCCHHHHHHCCCCCCHHH
LAPRVPFFRFPGFASTPELLEALRARGVSVFGADFWASDWNKMTPEQELALVLQRLDATG
HHCCCCCEECCCCCCCHHHHHHHHHCCCEEEECHHHHCCCCCCCCHHHHHHHHHHHCCCC
GGIVLFHDTKAQTAAMIPAFLRALAQRGYRVVHMVPARQRATER
CCEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHCCCC
>Mature Secondary Structure 
PLQEPHGMPASNVSRTCVLLATVLAAVLSFAPARPASAASAAAACPGRPDALGTTRVIE
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCCCCCEEEEE
VPAGVQVGTKSFPQTLPLEKGEVVLTFDDGPWPHTTAAILDALKAECVKATFFLIGENAR
CCCCCEECCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHEEEECCCCC
ARPELVKREIAEGHTVAHHSMTHPDATLAKLPFPAAMAEVTKGMAADDLAAYGSAGSAEQ
CCHHHHHHHHHCCCEEECCCCCCCCCHHHHCCCHHHHHHHHCCCCHHHHHHCCCCCCHHH
LAPRVPFFRFPGFASTPELLEALRARGVSVFGADFWASDWNKMTPEQELALVLQRLDATG
HHCCCCCEECCCCCCCHHHHHHHHHCCCEEEECHHHHCCCCCCCCHHHHHHHHHHHCCCC
GGIVLFHDTKAQTAAMIPAFLRALAQRGYRVVHMVPARQRATER
CCEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 4006668; 6336331; 11481432 [H]