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The map label for this gene is ycjC [C]

Identifier: 158424413

GI number: 158424413

Start: 3170166

End: 3170816

Strand: Direct

Name: ycjC [C]

Synonym: AZC_2789

Alternate gene names: 158424413

Gene position: 3170166-3170816 (Clockwise)

Preceding gene: 158424407

Following gene: 158424424

Centisome position: 59.04

GC content: 69.59

Gene sequence:

>651_bases
GTGACGGGCTCGGGATGCCGCCTCGGCACCGCGTCCGCTTGTGGGAGAATGCGCGTGCTCGATGCCAGCAATGCGGACCG
TCTCGGGCCCAACCTGCGGCAGCTCCGGCAGGAACGGGGGATGACCCTCGACCGTCTTGCGGCGGAGAGTGCGCTGACGC
GCGGCTACCTTTCGCTGGTGGAGCGCGGGCTCAAGACGCCGTCCATCACCGCCCTGCTGCGGGTGGCAACAGCGCTCGGG
GTGAATATCGCCCAGCTGTTCGACCTCAACGCCGCTCCCACGGCCCGCTACACCTTGACCCGGCACGGTGATGCCCGCGC
GCTCGAGGACGGCACCTTTGGCCTGATGCCGCTCGCGGCCCGACGGGCCCGCAAGATGATGGACCCCTTCCTGCTGACGC
CCGCCTTCAAGCCGGGCGGGCGCATCGATCCGCGCTGGGCGCACGGCGGCGAGGAATTCCTGTTCGTGGTTTCCGGCCGG
GTTTCCATCCGGCTCGGCTCGGAGGACATGGAACTGGGACCGGGCGATTCGCTCTATTTCGAGGGCGAGATCAAGCACGA
GGTCCGCAGCCTCGGACGGGAGAAGGCCCAGGTGCTGGTGGTCATCGCCCTGCCAGCCTCTCCGCCGGCGGCAGCGGAGC
CCACCAGCTGA

Upstream 100 bases:

>100_bases
TTTTCAGACAGCCAAACGGCCCCAAGCTGTCACATCTGCACAAAACCGTGCGCGACACTGACACATATTTCCTCACGGAA
AACACATCTGTACAAGCGGC

Downstream 100 bases:

>100_bases
GCCGGCAGGTAACCCCTCATTGATTCAAGGCAGCGCTGTGGGTTCGACGGCGCGCGGATGTCGGCTAGCGCAGGCGCTCC
AGCAGGCTCACGAGTTGCGC

Product: XRE family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator; Transcriptional Regulator XRE Family; MerR Family Transcriptional Regulator; Cupin 2 Domain-Containing Protein; Cro/CI Family Transcriptional Regulator; Transcriptional Regulator XRE Family With Cupin Sensor; Transcriptional Regulator MerR Family; Transcriptional Regulator Cro/CI Family; Cupin 2 Conserved Barrel Domain Protein; Cupin 2 Conserved Barrel Domain-Containing Protein; Cupin Domain Protein; Helix-Turn-Helix Domain-Containing Protein; Helix-Turn-Helix Domain Protein; Transcriptional Regulator HTH_3 Family; Transcription Regulator; Helix-Turn-Helix Transcriptional Regulator PuuR; Transcriptional Regulator-Like Protein; Helix-Turn-Helix Family; HTH-Type Transcriptional Regulator YdcN; Epoxidase; Cupin 2 Barrel Domain-Containing Protein; Transcriptional Regulator Merr Family; Regulatory Protein; Transcriptional Regulator XRE Family Protein; Helix-Turn-Helix Transcriptional Regulator; Helix-Turn-Helix Family Protein; Transcription Regulator Protein; Transcriptional Regulator Cro/CI Family Protein; Transcriptional Regulator Protein; XRE Family-Like Protein; HTH_3family Transcriptional Regulator; Cupin/Helix-Turn-Helix Domain-Containing Protein

Number of amino acids: Translated: 216; Mature: 215

Protein sequence:

>216_residues
MTGSGCRLGTASACGRMRVLDASNADRLGPNLRQLRQERGMTLDRLAAESALTRGYLSLVERGLKTPSITALLRVATALG
VNIAQLFDLNAAPTARYTLTRHGDARALEDGTFGLMPLAARRARKMMDPFLLTPAFKPGGRIDPRWAHGGEEFLFVVSGR
VSIRLGSEDMELGPGDSLYFEGEIKHEVRSLGREKAQVLVVIALPASPPAAAEPTS

Sequences:

>Translated_216_residues
MTGSGCRLGTASACGRMRVLDASNADRLGPNLRQLRQERGMTLDRLAAESALTRGYLSLVERGLKTPSITALLRVATALG
VNIAQLFDLNAAPTARYTLTRHGDARALEDGTFGLMPLAARRARKMMDPFLLTPAFKPGGRIDPRWAHGGEEFLFVVSGR
VSIRLGSEDMELGPGDSLYFEGEIKHEVRSLGREKAQVLVVIALPASPPAAAEPTS
>Mature_215_residues
TGSGCRLGTASACGRMRVLDASNADRLGPNLRQLRQERGMTLDRLAAESALTRGYLSLVERGLKTPSITALLRVATALGV
NIAQLFDLNAAPTARYTLTRHGDARALEDGTFGLMPLAARRARKMMDPFLLTPAFKPGGRIDPRWAHGGEEFLFVVSGRV
SIRLGSEDMELGPGDSLYFEGEIKHEVRSLGREKAQVLVVIALPASPPAAAEPTS

Specific function: Unknown

COG id: COG1396

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23226; Mature: 23095

Theoretical pI: Translated: 10.00; Mature: 10.00

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTGSGCRLGTASACGRMRVLDASNADRLGPNLRQLRQERGMTLDRLAAESALTRGYLSLV
CCCCCCCCCCHHHCCCEEEEECCCCHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
ERGLKTPSITALLRVATALGVNIAQLFDLNAAPTARYTLTRHGDARALEDGTFGLMPLAA
HHCCCCCHHHHHHHHHHHHCCCHHHHHCCCCCCCEEEEEEECCCCCEECCCCCCHHHHHH
RRARKMMDPFLLTPAFKPGGRIDPRWAHGGEEFLFVVSGRVSIRLGSEDMELGPGDSLYF
HHHHHHHCCCEECCCCCCCCCCCCCCCCCCCEEEEEEECEEEEEECCCCCCCCCCCCEEE
EGEIKHEVRSLGREKAQVLVVIALPASPPAAAEPTS
CCHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCC
>Mature Secondary Structure 
TGSGCRLGTASACGRMRVLDASNADRLGPNLRQLRQERGMTLDRLAAESALTRGYLSLV
CCCCCCCCCHHHCCCEEEEECCCCHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
ERGLKTPSITALLRVATALGVNIAQLFDLNAAPTARYTLTRHGDARALEDGTFGLMPLAA
HHCCCCCHHHHHHHHHHHHCCCHHHHHCCCCCCCEEEEEEECCCCCEECCCCCCHHHHHH
RRARKMMDPFLLTPAFKPGGRIDPRWAHGGEEFLFVVSGRVSIRLGSEDMELGPGDSLYF
HHHHHHHCCCEECCCCCCCCCCCCCCCCCCCEEEEEEECEEEEEECCCCCCCCCCCCEEE
EGEIKHEVRSLGREKAQVLVVIALPASPPAAAEPTS
CCHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA