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The map label for this gene is gntR [C]

Identifier: 158424271

GI number: 158424271

Start: 2998550

End: 2999266

Strand: Direct

Name: gntR [C]

Synonym: AZC_2647

Alternate gene names: 158424271

Gene position: 2998550-2999266 (Clockwise)

Preceding gene: 158424265

Following gene: 158424273

Centisome position: 55.84

GC content: 68.34

Gene sequence:

>717_bases
ATGTCGGTTGCGGAGGTGAGCGTGCTGTCGCGGGATGCGGCCAAGCGGGGGGCGGCCCATGTCCTCGACGTGCTGCGGCA
GGACATCCTCTCGCTCGCGCTGGCACCGGGCGCCGTCCTGTCCCGGCAGGACTTGCAGGAGCGCTTCCGCCTTTCCTCCA
CGCCCATCCGCGATGCGCTCATGAAGCTACAGGAGGAAGGGCTGGTGGATGTCTTCCCCCAGCACGCGACCGTGGTAAGC
CCCATCGATGTGGAGCAGGCGCGGCAGGCCCAGTTCCTACGCCGCTCCATCGAGCTGGAACTGGTCCGCAGCCTCGCCCT
CGCTCCAGCGCCCGCGCTGGTGGAACGGCTCCGGAGCCTCATCCGGCAGCAGAGCGTGTTCGCCGACCTCGGGGAATATG
AGCAGTTCTCGGCCGCCGATCAGGCCTTCCACCGCACCATGTATGAGGCCGAAGGGGTTATCGATCTTTGGCATCTGGTG
CGGCGCCGCAGCGGCCATATCGACCGGCTGCGGCGCCTGCATCTGCCCAAGGCCGGCAAGATTCGCGAGATCCTCGCCGC
CCACACCGCCATCACCGATGCGGTCGCCGCGGGCGATGCCCCGGCGGCGCAGGAGGCGCTTCGGGACCACCTCTCCCGCT
CGCTGGATTTCGTCGAGCAGTTGCGCCAGTCACACCCGGAATATTTCTCCGGAACTGACGGCCGCCCGGCGCGCTAG

Upstream 100 bases:

>100_bases
GCGTTGACGCCGTCTGCACCCCGGACTGAAGCACTAATGCATTAGTTGGTCAAGCGAGGACGAGAGTGATATGAAGGCAG
ACGAGACGAGGAGCGGTTGA

Downstream 100 bases:

>100_bases
ACCGCCGCCACCTCCACGAGGCAGCTCATGGCGTTCGGCCCTTGGGTGAGGCTGGATGTGCCCACATCGCGCGTCAGCAC
ATTGACCGTGCCGGCCCGCT

Product: transcriptional regulatory protein

Products: NA

Alternate protein names: ORF 1 [H]

Number of amino acids: Translated: 238; Mature: 237

Protein sequence:

>238_residues
MSVAEVSVLSRDAAKRGAAHVLDVLRQDILSLALAPGAVLSRQDLQERFRLSSTPIRDALMKLQEEGLVDVFPQHATVVS
PIDVEQARQAQFLRRSIELELVRSLALAPAPALVERLRSLIRQQSVFADLGEYEQFSAADQAFHRTMYEAEGVIDLWHLV
RRRSGHIDRLRRLHLPKAGKIREILAAHTAITDAVAAGDAPAAQEALRDHLSRSLDFVEQLRQSHPEYFSGTDGRPAR

Sequences:

>Translated_238_residues
MSVAEVSVLSRDAAKRGAAHVLDVLRQDILSLALAPGAVLSRQDLQERFRLSSTPIRDALMKLQEEGLVDVFPQHATVVS
PIDVEQARQAQFLRRSIELELVRSLALAPAPALVERLRSLIRQQSVFADLGEYEQFSAADQAFHRTMYEAEGVIDLWHLV
RRRSGHIDRLRRLHLPKAGKIREILAAHTAITDAVAAGDAPAAQEALRDHLSRSLDFVEQLRQSHPEYFSGTDGRPAR
>Mature_237_residues
SVAEVSVLSRDAAKRGAAHVLDVLRQDILSLALAPGAVLSRQDLQERFRLSSTPIRDALMKLQEEGLVDVFPQHATVVSP
IDVEQARQAQFLRRSIELELVRSLALAPAPALVERLRSLIRQQSVFADLGEYEQFSAADQAFHRTMYEAEGVIDLWHLVR
RRSGHIDRLRRLHLPKAGKIREILAAHTAITDAVAAGDAPAAQEALRDHLSRSLDFVEQLRQSHPEYFSGTDGRPAR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787821, Length=211, Percent_Identity=27.4881516587678, Blast_Score=103, Evalue=1e-23,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 26544; Mature: 26412

Theoretical pI: Translated: 7.38; Mature: 7.38

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVAEVSVLSRDAAKRGAAHVLDVLRQDILSLALAPGAVLSRQDLQERFRLSSTPIRDAL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHH
MKLQEEGLVDVFPQHATVVSPIDVEQARQAQFLRRSIELELVRSLALAPAPALVERLRSL
HHHHHCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
IRQQSVFADLGEYEQFSAADQAFHRTMYEAEGVIDLWHLVRRRSGHIDRLRRLHLPKAGK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHCCCCCCH
IREILAAHTAITDAVAAGDAPAAQEALRDHLSRSLDFVEQLRQSHPEYFSGTDGRPAR
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure 
SVAEVSVLSRDAAKRGAAHVLDVLRQDILSLALAPGAVLSRQDLQERFRLSSTPIRDAL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHH
MKLQEEGLVDVFPQHATVVSPIDVEQARQAQFLRRSIELELVRSLALAPAPALVERLRSL
HHHHHCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
IRQQSVFADLGEYEQFSAADQAFHRTMYEAEGVIDLWHLVRRRSGHIDRLRRLHLPKAGK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHCCCCCCH
IREILAAHTAITDAVAAGDAPAAQEALRDHLSRSLDFVEQLRQSHPEYFSGTDGRPAR
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8277241; 1612449 [H]