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The map label for this gene is yjhH [C]

Identifier: 158424262

GI number: 158424262

Start: 2987925

End: 2988929

Strand: Reverse

Name: yjhH [C]

Synonym: AZC_2638

Alternate gene names: 158424262

Gene position: 2988929-2987925 (Counterclockwise)

Preceding gene: 158424263

Following gene: 158424261

Centisome position: 55.66

GC content: 65.97

Gene sequence:

>1005_bases
ATGCTGGTTTCAGCGGCCCGAGACAAGCGCCGCTCTCCCAGGCGAGGACATGAGATGACCAAGATGACCCCCCGCGAAAT
GGCGCAGACCCTGGGCTCCGGCCTCCTGTCCTTTCCGGTGACGCCTTTCCATGCCGCTGACTATTCGTTCAACGAAGCGC
AGTACCGGCAGAATATGGACTGGCTGTGCGGGTACAAGGTCGCCGGTCTGTTCGCTGCGGGCGGTACGGGCGAGTTCTTC
TCGCTGACGCCGGCCGAGGTGGAAAAGGTCGTCACGGTAGCGGTGAACGAGACGCGCGGCCGTGTGCCCGTGCTCGCCGG
TGCCGGCTATGGCACGGCCATCGCCAAGGATCTCGCCGTTGCCGCCGAGCGCGCGGGGGCCGACGGCCTGCTGCTCCTGC
CGCCTTACCTCGTGAATTCCGAGCAGGAGGGCCTGATGGCCCATGTGGAGGCGGTCTGCGCCGCCACCAAGCTCGGCGTC
ATCGTCTATAACCGCGACAATGCGGTACTGACCGAGGACAGCCTCGCCCGCCTCGCCGAGCGCTGCCCCAACCTCGTGGG
CTACAAGGACGGCATTGGCGATATCGAACTGATGGTGCGCATCCAGTCCAAGATCGGCGATCGCTTCACCTATGTGGGCG
GCCTGCCCACGGCCGAGACCTTCGCGCTGCCCTACCTGGAAATGGGCGTCACCACCTATTCCTCGGCGGTGTTCAATTTC
GTGCCGGAATTCTCCACCGCCTTCTATGCCGCGGTGCGCCGTCGCGACCGTGATGCGGTGGCTGCCGGCCTGAAGGATTT
CATCCTGCCGCTGCTCGCCATCCGCAATCGCAAGAAGGGCTATCCGGTCTCCATCATCAAGGCCGGCATGAAGGTGATCG
GCCGCGACAGCGGCCCGGTGCGCCCGCCGCTGACCGATCTCACCCCCGCCGAGATCGACGAACTCGCCGCGCTTGTGGCT
GCCCTGCCCAACGGGGGGCTTATCTCGCGCGCCGCCGCGGAGTAA

Upstream 100 bases:

>100_bases
CGGCCTGCCGGAGAGTGGCGCGCGGTCGTAACTGATCCCAAAAACGCATCGATCCATGCCGTATTTGGTCTGACTTGGCA
TCGATCCGGCAGTACCACTG

Downstream 100 bases:

>100_bases
ATCGTTCGTACTCAAACGATCCAGGCGAGATGCGACCATGAGTGAAATTGCGTTGAACTATATCGCCGGCGCGTGGGTCT
CGGGGGCTTCGGAGACGAAG

Product: 5-dehydro-4-deoxyglucarate dehydratase

Products: NA

Alternate protein names: 5-keto-4-deoxy-glucarate dehydratase; KDGDH [H]

Number of amino acids: Translated: 334; Mature: 334

Protein sequence:

>334_residues
MLVSAARDKRRSPRRGHEMTKMTPREMAQTLGSGLLSFPVTPFHAADYSFNEAQYRQNMDWLCGYKVAGLFAAGGTGEFF
SLTPAEVEKVVTVAVNETRGRVPVLAGAGYGTAIAKDLAVAAERAGADGLLLLPPYLVNSEQEGLMAHVEAVCAATKLGV
IVYNRDNAVLTEDSLARLAERCPNLVGYKDGIGDIELMVRIQSKIGDRFTYVGGLPTAETFALPYLEMGVTTYSSAVFNF
VPEFSTAFYAAVRRRDRDAVAAGLKDFILPLLAIRNRKKGYPVSIIKAGMKVIGRDSGPVRPPLTDLTPAEIDELAALVA
ALPNGGLISRAAAE

Sequences:

>Translated_334_residues
MLVSAARDKRRSPRRGHEMTKMTPREMAQTLGSGLLSFPVTPFHAADYSFNEAQYRQNMDWLCGYKVAGLFAAGGTGEFF
SLTPAEVEKVVTVAVNETRGRVPVLAGAGYGTAIAKDLAVAAERAGADGLLLLPPYLVNSEQEGLMAHVEAVCAATKLGV
IVYNRDNAVLTEDSLARLAERCPNLVGYKDGIGDIELMVRIQSKIGDRFTYVGGLPTAETFALPYLEMGVTTYSSAVFNF
VPEFSTAFYAAVRRRDRDAVAAGLKDFILPLLAIRNRKKGYPVSIIKAGMKVIGRDSGPVRPPLTDLTPAEIDELAALVA
ALPNGGLISRAAAE
>Mature_334_residues
MLVSAARDKRRSPRRGHEMTKMTPREMAQTLGSGLLSFPVTPFHAADYSFNEAQYRQNMDWLCGYKVAGLFAAGGTGEFF
SLTPAEVEKVVTVAVNETRGRVPVLAGAGYGTAIAKDLAVAAERAGADGLLLLPPYLVNSEQEGLMAHVEAVCAATKLGV
IVYNRDNAVLTEDSLARLAERCPNLVGYKDGIGDIELMVRIQSKIGDRFTYVGGLPTAETFALPYLEMGVTTYSSAVFNF
VPEFSTAFYAAVRRRDRDAVAAGLKDFILPLLAIRNRKKGYPVSIIKAGMKVIGRDSGPVRPPLTDLTPAEIDELAALVA
ALPNGGLISRAAAE

Specific function: Unknown

COG id: COG0329

COG function: function code EM; Dihydrodipicolinate synthase/N-acetylneuraminate lyase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DHDPS family [H]

Homologues:

Organism=Escherichia coli, GI87082415, Length=300, Percent_Identity=30.6666666666667, Blast_Score=94, Evalue=9e-21,
Organism=Escherichia coli, GI1786463, Length=277, Percent_Identity=28.8808664259928, Blast_Score=78, Evalue=9e-16,
Organism=Escherichia coli, GI1788823, Length=181, Percent_Identity=29.2817679558011, Blast_Score=75, Evalue=4e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR017655
- InterPro:   IPR002220 [H]

Pfam domain/function: PF00701 DHDPS [H]

EC number: =4.2.1.41 [H]

Molecular weight: Translated: 35845; Mature: 35845

Theoretical pI: Translated: 8.03; Mature: 8.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLVSAARDKRRSPRRGHEMTKMTPREMAQTLGSGLLSFPVTPFHAADYSFNEAQYRQNMD
CCCCCCHHHCCCCCCCCHHHCCCHHHHHHHHHCCHHHCCCCCCCCCCCCCCHHHHHCCCC
WLCGYKVAGLFAAGGTGEFFSLTPAEVEKVVTVAVNETRGRVPVLAGAGYGTAIAKDLAV
HHHHHHHHHEEECCCCCCEEECCHHHHHHEEEEEEECCCCCEEEEECCCCHHHHHHHHHH
AAERAGADGLLLLPPYLVNSEQEGLMAHVEAVCAATKLGVIVYNRDNAVLTEDSLARLAE
HHHHCCCCCEEECCCHHCCCCCHHHHHHHHHHHHHHHCCEEEECCCCCEECHHHHHHHHH
RCPNLVGYKDGIGDIELMVRIQSKIGDRFTYVGGLPTAETFALPYLEMGVTTYSSAVFNF
HCCCCCCCCCCCCCHHHHEEEHHHHCCCEEEECCCCCHHHHHCHHHHHHHHHHHHHHHHH
VPEFSTAFYAAVRRRDRDAVAAGLKDFILPLLAIRNRKKGYPVSIIKAGMKVIGRDSGPV
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCC
RPPLTDLTPAEIDELAALVAALPNGGLISRAAAE
CCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MLVSAARDKRRSPRRGHEMTKMTPREMAQTLGSGLLSFPVTPFHAADYSFNEAQYRQNMD
CCCCCCHHHCCCCCCCCHHHCCCHHHHHHHHHCCHHHCCCCCCCCCCCCCCHHHHHCCCC
WLCGYKVAGLFAAGGTGEFFSLTPAEVEKVVTVAVNETRGRVPVLAGAGYGTAIAKDLAV
HHHHHHHHHEEECCCCCCEEECCHHHHHHEEEEEEECCCCCEEEEECCCCHHHHHHHHHH
AAERAGADGLLLLPPYLVNSEQEGLMAHVEAVCAATKLGVIVYNRDNAVLTEDSLARLAE
HHHHCCCCCEEECCCHHCCCCCHHHHHHHHHHHHHHHCCEEEECCCCCEECHHHHHHHHH
RCPNLVGYKDGIGDIELMVRIQSKIGDRFTYVGGLPTAETFALPYLEMGVTTYSSAVFNF
HCCCCCCCCCCCCCHHHHEEEHHHHCCCEEEECCCCCHHHHHCHHHHHHHHHHHHHHHHH
VPEFSTAFYAAVRRRDRDAVAAGLKDFILPLLAIRNRKKGYPVSIIKAGMKVIGRDSGPV
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCC
RPPLTDLTPAEIDELAALVAALPNGGLISRAAAE
CCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12597275 [H]