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The map label for this gene is ycgF [H]

Identifier: 158424131

GI number: 158424131

Start: 2841020

End: 2841898

Strand: Direct

Name: ycgF [H]

Synonym: AZC_2507

Alternate gene names: 158424131

Gene position: 2841020-2841898 (Clockwise)

Preceding gene: 158424130

Following gene: 158424136

Centisome position: 52.91

GC content: 63.94

Gene sequence:

>879_bases
TTGTCTCGGACATCGGAACTGCTAACGTCTCGTATCGCCTCCGGTATTCAGCGGCGTTCGGAGGGTGTCCCGTGGGACAA
TTCGTTCTCGTTGCTGGATACGAGTATCCCGATGGGCCGGCGTTACCTTACGAAAACCACGTCACACGCCCGTGAAACCG
GCGGACACGGTGGCCAGCCCACATCCTTTACCATCGCTTTTCAGCCGATCGTCGATGTGAGCCGCGAGCATGTCTGGGGC
TATGAAGCGCTAGTGCGTGGCGAGAATGGCGAGAGCGCCGCATCCATCTTCGCCCAGGTGGAAGAGCCGAGAAAGCACCA
TTTCGATCAGGCCTGCCGCCAGCGCGCCATCGAAATGGCGGGCCGGCTCTTTCCCGATGAGCGCACACGCCTCTCGGTGA
ACTTCCTGCCCGACCACGAGCAGGTGCCCAAGGCGGCCATGCGGGCGTCCCTCGATGCTGCGAGCCGGGCCGGACTGCGG
CCGAACCAACTGATGTTCGAATTCACGGAAACCGGCCATTTCGGGGATCTGGGAGGCACGGCGAATCTCGTCGAGAAATA
CCGCGACCTCGGCCTGCTCACGGCGCTCGACGATTTCGGCTCGGGCTATTCCGGCCTCCTGCGGCTCGCAGGCCTTCAGC
CGGATTTCCTCAAGATCGACATGGGCCTCGTGCGCAACATCTCAGCCGACAAGCGGCGGCAGGCCATCGTTGCCGCCGTC
GTGAGCCTGGCGCGGGCGCTCGACATCGACCTCATCGCCGAGGGGGTCGAGACCCGAGAGGAGAGCACCGCCCTGCGCGA
ACTCGGCATTACGCTCTTCCAGGGCTTCCACTATGCCCGGCCGACCATCGGCACGCTGCCGCCCGTCATGGTCTCCTGA

Upstream 100 bases:

>100_bases
CGCCTGCGGCTATGTCAGCGGGACGGTCCTCGATATTGACGGCGGCGCAGGGTCGCACTGAACGAGGCACATTCTTTTAC
CATTTGGCGCCACGATCGCC

Downstream 100 bases:

>100_bases
CGGCGAATCGGGAAGAGCCTCAATCCCCTCCCGATGGAGCGTCCTCTCAGGCCGCCTCCGCCTTCATGCACGGCTGACCG
TCCGTTCCGGCCGTCCAGAG

Product: EAL domain-containing protein

Products: NA

Alternate protein names: Blrp [H]

Number of amino acids: Translated: 292; Mature: 291

Protein sequence:

>292_residues
MSRTSELLTSRIASGIQRRSEGVPWDNSFSLLDTSIPMGRRYLTKTTSHARETGGHGGQPTSFTIAFQPIVDVSREHVWG
YEALVRGENGESAASIFAQVEEPRKHHFDQACRQRAIEMAGRLFPDERTRLSVNFLPDHEQVPKAAMRASLDAASRAGLR
PNQLMFEFTETGHFGDLGGTANLVEKYRDLGLLTALDDFGSGYSGLLRLAGLQPDFLKIDMGLVRNISADKRRQAIVAAV
VSLARALDIDLIAEGVETREESTALRELGITLFQGFHYARPTIGTLPPVMVS

Sequences:

>Translated_292_residues
MSRTSELLTSRIASGIQRRSEGVPWDNSFSLLDTSIPMGRRYLTKTTSHARETGGHGGQPTSFTIAFQPIVDVSREHVWG
YEALVRGENGESAASIFAQVEEPRKHHFDQACRQRAIEMAGRLFPDERTRLSVNFLPDHEQVPKAAMRASLDAASRAGLR
PNQLMFEFTETGHFGDLGGTANLVEKYRDLGLLTALDDFGSGYSGLLRLAGLQPDFLKIDMGLVRNISADKRRQAIVAAV
VSLARALDIDLIAEGVETREESTALRELGITLFQGFHYARPTIGTLPPVMVS
>Mature_291_residues
SRTSELLTSRIASGIQRRSEGVPWDNSFSLLDTSIPMGRRYLTKTTSHARETGGHGGQPTSFTIAFQPIVDVSREHVWGY
EALVRGENGESAASIFAQVEEPRKHHFDQACRQRAIEMAGRLFPDERTRLSVNFLPDHEQVPKAAMRASLDAASRAGLRP
NQLMFEFTETGHFGDLGGTANLVEKYRDLGLLTALDDFGSGYSGLLRLAGLQPDFLKIDMGLVRNISADKRRQAIVAAVV
SLARALDIDLIAEGVETREESTALRELGITLFQGFHYARPTIGTLPPVMVS

Specific function: Binds to and releases the YcgE repressor from its bound DNA target in a blue-light-dependent (470 nm) fashion. A shift to low temperature also triggers a YcgF-medisted relief of repression by YcgE, suggesting YcgF may serve as a thermometer. Blue light ma

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 EAL domain [H]

Homologues:

Organism=Escherichia coli, GI1787410, Length=255, Percent_Identity=29.0196078431373, Blast_Score=107, Evalue=9e-25,
Organism=Escherichia coli, GI1790496, Length=236, Percent_Identity=29.6610169491525, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI1788502, Length=230, Percent_Identity=30.4347826086957, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI87081921, Length=282, Percent_Identity=27.3049645390071, Blast_Score=92, Evalue=5e-20,
Organism=Escherichia coli, GI87081980, Length=232, Percent_Identity=27.5862068965517, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI226510982, Length=134, Percent_Identity=35.8208955223881, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI87081845, Length=229, Percent_Identity=31.0043668122271, Blast_Score=85, Evalue=5e-18,
Organism=Escherichia coli, GI87082096, Length=152, Percent_Identity=32.2368421052632, Blast_Score=84, Evalue=8e-18,
Organism=Escherichia coli, GI1788849, Length=132, Percent_Identity=34.0909090909091, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1787541, Length=115, Percent_Identity=38.2608695652174, Blast_Score=82, Evalue=5e-17,
Organism=Escherichia coli, GI87081743, Length=227, Percent_Identity=26.8722466960352, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1786507, Length=138, Percent_Identity=30.4347826086957, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1787055, Length=257, Percent_Identity=28.7937743190661, Blast_Score=72, Evalue=6e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001792
- InterPro:   IPR007024
- InterPro:   IPR001633 [H]

Pfam domain/function: PF04940 BLUF; PF00563 EAL [H]

EC number: NA

Molecular weight: Translated: 32141; Mature: 32010

Theoretical pI: Translated: 6.73; Mature: 6.73

Prosite motif: PS50883 EAL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRTSELLTSRIASGIQRRSEGVPWDNSFSLLDTSIPMGRRYLTKTTSHARETGGHGGQP
CCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCC
TSFTIAFQPIVDVSREHVWGYEALVRGENGESAASIFAQVEEPRKHHFDQACRQRAIEMA
CEEEEEEHHHHHHHHHHHCCHHHEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GRLFPDERTRLSVNFLPDHEQVPKAAMRASLDAASRAGLRPNQLMFEFTETGHFGDLGGT
HCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCH
ANLVEKYRDLGLLTALDDFGSGYSGLLRLAGLQPDFLKIDMGLVRNISADKRRQAIVAAV
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCHHEECHHHHHCCCHHHHHHHHHHHH
VSLARALDIDLIAEGVETREESTALRELGITLFQGFHYARPTIGTLPPVMVS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCCCCCHHCC
>Mature Secondary Structure 
SRTSELLTSRIASGIQRRSEGVPWDNSFSLLDTSIPMGRRYLTKTTSHARETGGHGGQP
CHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCC
TSFTIAFQPIVDVSREHVWGYEALVRGENGESAASIFAQVEEPRKHHFDQACRQRAIEMA
CEEEEEEHHHHHHHHHHHCCHHHEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GRLFPDERTRLSVNFLPDHEQVPKAAMRASLDAASRAGLRPNQLMFEFTETGHFGDLGGT
HCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCH
ANLVEKYRDLGLLTALDDFGSGYSGLLRLAGLQPDFLKIDMGLVRNISADKRRQAIVAAV
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCHHEECHHHHHCCCHHHHHHHHHHHH
VSLARALDIDLIAEGVETREESTALRELGITLFQGFHYARPTIGTLPPVMVS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCCCCCHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]