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The map label for this gene is ybdK [C]

Identifier: 158423927

GI number: 158423927

Start: 2627635

End: 2628795

Strand: Reverse

Name: ybdK [C]

Synonym: AZC_2303

Alternate gene names: 158423927

Gene position: 2628795-2627635 (Counterclockwise)

Preceding gene: 229595716

Following gene: 158423925

Centisome position: 48.96

GC content: 67.01

Gene sequence:

>1161_bases
GTGCTTCGACTTGGCTCGCTGGCGAGCCGGGAGGTACGCATGTCCAATGATTATCGCTTCGGCATCGAGGAAGAGTTCTT
CGTCGTGGATGCCGAGACTAAAGCGGCGCTGCGCCGGATGCCGTCCGGCTTCTTCGATGCGCTGCGCGATCGCCTCGGCG
ACTCCATCACGGTCGAACTGCTCCAGTCGCAGCTCGAAATGGCCACCGCTCCGACGGACCGCATCGGCGACGCGCTCGAT
GAGCTGCGCGACCTGCGCCACATTGCCGGGCGCGTCGCAGCCGAACACGGCCTTGGCTTCATCGCCGCCGGCACCCATCC
CACCGCGAGCTGGGACAATGTGCGCGCCACCAAGGCCAACCGCTACGACGGGTTGATGCAGGATCTGCAGATGCTCGGCG
AGCGCAACATGGTGTGCGGCCTGCACGTTCATGTGGAACTGCCCGATCCGGACCTGCGCGTGGACGTCATGCGGCGTATC
ACGCCCTATCTGCCCCACTTCATCGCCCTGTCCACCTCCTCGCCCTTCTGGGGCTCGCGGCAGACCGGCCTGATGGGCTA
TCGCCTTGCGGCCTATGACGAGCTGCCCCGCACTGGCCTGCCCGAGTTGTTCGAGGACAATGCGGCCTATGAGGAATATG
TGGCGGCGCTCGTGGGCGCGCGGGCCATCAGCGATTCGAGCTACGTGTGGTGGGCGATCCGCCCCTCGCAGAAGCATCCG
ACCCTGGAGCTGAGGGCGCCCGACGCCTGCACGCGGGTGGAGGATGCGGTGGCGCTCGCCGCCCTCTATCGCTCGCTCGT
GCGCTTCCTCGTGCGCCATCCCGAGCACCACCGGCATATCGGCGCGGTGGACCGGGCCATCGCCAACGAGAACAAATGGC
GAGCCCAGCGCTACGGCATCCACGGCTCGTTCGTGGACCTCGCGGAACAGCGCGCGATCCAGGTGCGCGATGCCCTCGAC
CAGCTCATCGCCCTCGTGGCCGATGATGCCGAGGATCTCGGCTGCCTCGATGCACTGCTCCATTTGCGCACCATTCCGGA
CGCCGGCACCAGCGCCGACATGCAGATCGCCGTCTATCAGGAGGCGCACCACCGCACGGGCAACCGCGGTGAGGCCCTCC
AGGCGGTGAAGACCTGGCTCGCTCACGCCACGCTCCAGTGA

Upstream 100 bases:

>100_bases
CAGCGACGTGGGCTGGTTTGATTCCAGTCTTTTGCGCGTGCCCCATTGCTGACGGATTTGCGATCACCCTCAGCGCAACT
TCGCGCCGGTCGAAGCGTTA

Downstream 100 bases:

>100_bases
GGCGGGGCCGCCAAACAAAAAGGGCCGCCGGGGCGTCGGCGGCCCTCATTTTCACTTCGTCAGGACAAGCTCAGAGCTTG
AACGGCACGATGGTCTGCTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 386; Mature: 386

Protein sequence:

>386_residues
MLRLGSLASREVRMSNDYRFGIEEEFFVVDAETKAALRRMPSGFFDALRDRLGDSITVELLQSQLEMATAPTDRIGDALD
ELRDLRHIAGRVAAEHGLGFIAAGTHPTASWDNVRATKANRYDGLMQDLQMLGERNMVCGLHVHVELPDPDLRVDVMRRI
TPYLPHFIALSTSSPFWGSRQTGLMGYRLAAYDELPRTGLPELFEDNAAYEEYVAALVGARAISDSSYVWWAIRPSQKHP
TLELRAPDACTRVEDAVALAALYRSLVRFLVRHPEHHRHIGAVDRAIANENKWRAQRYGIHGSFVDLAEQRAIQVRDALD
QLIALVADDAEDLGCLDALLHLRTIPDAGTSADMQIAVYQEAHHRTGNRGEALQAVKTWLAHATLQ

Sequences:

>Translated_386_residues
MLRLGSLASREVRMSNDYRFGIEEEFFVVDAETKAALRRMPSGFFDALRDRLGDSITVELLQSQLEMATAPTDRIGDALD
ELRDLRHIAGRVAAEHGLGFIAAGTHPTASWDNVRATKANRYDGLMQDLQMLGERNMVCGLHVHVELPDPDLRVDVMRRI
TPYLPHFIALSTSSPFWGSRQTGLMGYRLAAYDELPRTGLPELFEDNAAYEEYVAALVGARAISDSSYVWWAIRPSQKHP
TLELRAPDACTRVEDAVALAALYRSLVRFLVRHPEHHRHIGAVDRAIANENKWRAQRYGIHGSFVDLAEQRAIQVRDALD
QLIALVADDAEDLGCLDALLHLRTIPDAGTSADMQIAVYQEAHHRTGNRGEALQAVKTWLAHATLQ
>Mature_386_residues
MLRLGSLASREVRMSNDYRFGIEEEFFVVDAETKAALRRMPSGFFDALRDRLGDSITVELLQSQLEMATAPTDRIGDALD
ELRDLRHIAGRVAAEHGLGFIAAGTHPTASWDNVRATKANRYDGLMQDLQMLGERNMVCGLHVHVELPDPDLRVDVMRRI
TPYLPHFIALSTSSPFWGSRQTGLMGYRLAAYDELPRTGLPELFEDNAAYEEYVAALVGARAISDSSYVWWAIRPSQKHP
TLELRAPDACTRVEDAVALAALYRSLVRFLVRHPEHHRHIGAVDRAIANENKWRAQRYGIHGSFVDLAEQRAIQVRDALD
QLIALVADDAEDLGCLDALLHLRTIPDAGTSADMQIAVYQEAHHRTGNRGEALQAVKTWLAHATLQ

Specific function: ATP-dependent carboxylate-amine ligase

COG id: COG2170

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the carboxylate-amine ligase family

Homologues:

Organism=Escherichia coli, GI1786795, Length=333, Percent_Identity=25.2252252252252, Blast_Score=106, Evalue=3e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CAAL_AZOC5 (A8I5N7)

Other databases:

- EMBL:   AP009384
- RefSeq:   YP_001525219.1
- ProteinModelPortal:   A8I5N7
- SMR:   A8I5N7
- GeneID:   5689624
- GenomeReviews:   AP009384_GR
- KEGG:   azc:AZC_2303
- HOGENOM:   HBG564677
- OMA:   DKPRFQE
- ProtClustDB:   CLSK980164
- BioCyc:   ACAU438753:AZC_2303-MONOMER
- HAMAP:   MF_01609
- InterPro:   IPR011793
- InterPro:   IPR006336
- TIGRFAMs:   TIGR02050

Pfam domain/function: PF04107 GCS2

EC number: NA

Molecular weight: Translated: 43163; Mature: 43163

Theoretical pI: Translated: 6.08; Mature: 6.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRLGSLASREVRMSNDYRFGIEEEFFVVDAETKAALRRMPSGFFDALRDRLGDSITVEL
CCCCCCCCCCCEECCCCEEECCCCCEEEEECHHHHHHHHCCCHHHHHHHHHHCCHHHHHH
LQSQLEMATAPTDRIGDALDELRDLRHIAGRVAAEHGLGFIAAGTHPTASWDNVRATKAN
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCH
RYDGLMQDLQMLGERNMVCGLHVHVELPDPDLRVDVMRRITPYLPHFIALSTSSPFWGSR
HHHHHHHHHHHHCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCC
QTGLMGYRLAAYDELPRTGLPELFEDNAAYEEYVAALVGARAISDSSYVWWAIRPSQKHP
CCCCHHEEHHHHHCCCCCCCHHHHHCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCC
TLELRAPDACTRVEDAVALAALYRSLVRFLVRHPEHHRHIGAVDRAIANENKWRAQRYGI
EEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHCCC
HGSFVDLAEQRAIQVRDALDQLIALVADDAEDLGCLDALLHLRTIPDAGTSADMQIAVYQ
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEEE
EAHHRTGNRGEALQAVKTWLAHATLQ
HHHHCCCCCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MLRLGSLASREVRMSNDYRFGIEEEFFVVDAETKAALRRMPSGFFDALRDRLGDSITVEL
CCCCCCCCCCCEECCCCEEECCCCCEEEEECHHHHHHHHCCCHHHHHHHHHHCCHHHHHH
LQSQLEMATAPTDRIGDALDELRDLRHIAGRVAAEHGLGFIAAGTHPTASWDNVRATKAN
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCH
RYDGLMQDLQMLGERNMVCGLHVHVELPDPDLRVDVMRRITPYLPHFIALSTSSPFWGSR
HHHHHHHHHHHHCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCC
QTGLMGYRLAAYDELPRTGLPELFEDNAAYEEYVAALVGARAISDSSYVWWAIRPSQKHP
CCCCHHEEHHHHHCCCCCCCHHHHHCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCC
TLELRAPDACTRVEDAVALAALYRSLVRFLVRHPEHHRHIGAVDRAIANENKWRAQRYGI
EEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHCCC
HGSFVDLAEQRAIQVRDALDQLIALVADDAEDLGCLDALLHLRTIPDAGTSADMQIAVYQ
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEEE
EAHHRTGNRGEALQAVKTWLAHATLQ
HHHHCCCCCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA