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The map label for this gene is yliC [C]

Identifier: 158423609

GI number: 158423609

Start: 2288127

End: 2289101

Strand: Reverse

Name: yliC [C]

Synonym: AZC_1985

Alternate gene names: 158423609

Gene position: 2289101-2288127 (Counterclockwise)

Preceding gene: 158423610

Following gene: 158423608

Centisome position: 42.63

GC content: 64.72

Gene sequence:

>975_bases
ATGCTCGCGTTTCTTCTGCGGCGGATCTTCGAGGCCGTGGTGGTGATGGTCGTCGTCGCCTTCATCGCCTTCTCGATGTT
CCGCTTCATGGGCGACCCGGTCGCCAATATGATGGGCCCCGATGCCACCATGGCCGACCGTCAGGCCATGCGCGAACGCC
TCGGCCTCGACCGGCCCTTCCCCATCCAGTTCGGCCATTTCATCGAGGACATCTCTCAGGGCAATTTCGGCGTCTCCTTC
CGCGTCGGCCGCCCGGTGATCGACCTCATTGGCGAACGGCTGCCCGCGACGCTGGAACTCGCCTTCGTTTCCGGCCTCTT
TGCGCTCGCCTTCGGCCTCGGCTTCGGCGTCTACACGGCACTGCGGCGTTCCGGCCTCGTCTCACGCGCCATCATGGCCA
TCTCGCTCATCGGCGTGTCGCTGCCGACCTTCCTGATCGGCATCGGCCTCATCTATCTCTTCGCGGTGGAACTGCGCTGG
CTACCGAGCTTCGGGCGCGGCGACGTGGTTCGCATCGGCGGCTGGACCACCGGCTTCCTCACCCGCTCGGGCCTTGCCTC
CCTCGTGCTTCCGGCCATCACGCTGGGCCTGTTCCAGATGACGCTCATCATGCGCCTGGTGCGCGCCGAGATGCTGGAGG
TGCTGCGGCAGGATTACATCCGCTTCGCCCGCGCCCGTGGACTCACCGACCGAGCGGTACATTTCCGCCATGCGCTGAAG
AATACGCTGGTGCCGGTCATCACAGTGATGGGCCTCCAGCTCGGCTCCATCGTCGCCTTCTCCATCATCACGGAAACGGT
GTTTCAGTGGCCGGGCATCGGCTCGCTCTTCATCTCGTCCGTGCAGGCGGTCGATATTCCGGTGATGGCCACCTATCTGC
TGTTCGTCGCCGGCTTCTTCGTGGCGGTGAACCTCATCGTCGATCTCCTGTATTTCGCCGTCGATCCGCGCCTGCGCGGC
TCGGGAGGGCACTGA

Upstream 100 bases:

>100_bases
CGGCCGCGCCGAATGCCGGGCCCGCGTGGGATCCGGCCTGCCTGCCTTCCGGCCGCTCTCAGGGCGGCCGGCCCGCTCTC
CCGTACAGAGCCGTGACAGC

Downstream 100 bases:

>100_bases
CATGGCGCTCACCACCGCTTCGCCCGAGCGCACGCCTAACTGGTTCGCCCGCGCCTGGGATTCGGACATCGGTCATTCCT
TCCGCACCTCGCCCGTCACC

Product: ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 324; Mature: 324

Protein sequence:

>324_residues
MLAFLLRRIFEAVVVMVVVAFIAFSMFRFMGDPVANMMGPDATMADRQAMRERLGLDRPFPIQFGHFIEDISQGNFGVSF
RVGRPVIDLIGERLPATLELAFVSGLFALAFGLGFGVYTALRRSGLVSRAIMAISLIGVSLPTFLIGIGLIYLFAVELRW
LPSFGRGDVVRIGGWTTGFLTRSGLASLVLPAITLGLFQMTLIMRLVRAEMLEVLRQDYIRFARARGLTDRAVHFRHALK
NTLVPVITVMGLQLGSIVAFSIITETVFQWPGIGSLFISSVQAVDIPVMATYLLFVAGFFVAVNLIVDLLYFAVDPRLRG
SGGH

Sequences:

>Translated_324_residues
MLAFLLRRIFEAVVVMVVVAFIAFSMFRFMGDPVANMMGPDATMADRQAMRERLGLDRPFPIQFGHFIEDISQGNFGVSF
RVGRPVIDLIGERLPATLELAFVSGLFALAFGLGFGVYTALRRSGLVSRAIMAISLIGVSLPTFLIGIGLIYLFAVELRW
LPSFGRGDVVRIGGWTTGFLTRSGLASLVLPAITLGLFQMTLIMRLVRAEMLEVLRQDYIRFARARGLTDRAVHFRHALK
NTLVPVITVMGLQLGSIVAFSIITETVFQWPGIGSLFISSVQAVDIPVMATYLLFVAGFFVAVNLIVDLLYFAVDPRLRG
SGGH
>Mature_324_residues
MLAFLLRRIFEAVVVMVVVAFIAFSMFRFMGDPVANMMGPDATMADRQAMRERLGLDRPFPIQFGHFIEDISQGNFGVSF
RVGRPVIDLIGERLPATLELAFVSGLFALAFGLGFGVYTALRRSGLVSRAIMAISLIGVSLPTFLIGIGLIYLFAVELRW
LPSFGRGDVVRIGGWTTGFLTRSGLASLVLPAITLGLFQMTLIMRLVRAEMLEVLRQDYIRFARARGLTDRAVHFRHALK
NTLVPVITVMGLQLGSIVAFSIITETVFQWPGIGSLFISSVQAVDIPVMATYLLFVAGFFVAVNLIVDLLYFAVDPRLRG
SGGH

Specific function: Probably part of the binding-protein-dependent transport system y4tOPQRS for a peptide. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787053, Length=320, Percent_Identity=35.9375, Blast_Score=214, Evalue=7e-57,
Organism=Escherichia coli, GI1789965, Length=336, Percent_Identity=38.0952380952381, Blast_Score=208, Evalue=3e-55,
Organism=Escherichia coli, GI1789888, Length=331, Percent_Identity=34.7432024169184, Blast_Score=191, Evalue=5e-50,
Organism=Escherichia coli, GI1787761, Length=336, Percent_Identity=38.0952380952381, Blast_Score=176, Evalue=2e-45,
Organism=Escherichia coli, GI1787497, Length=322, Percent_Identity=32.2981366459627, Blast_Score=169, Evalue=2e-43,
Organism=Escherichia coli, GI1787550, Length=331, Percent_Identity=29.607250755287, Blast_Score=138, Evalue=5e-34,
Organism=Escherichia coli, GI1788504, Length=283, Percent_Identity=26.5017667844523, Blast_Score=73, Evalue=3e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 35628; Mature: 35628

Theoretical pI: Translated: 11.03; Mature: 11.03

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLAFLLRRIFEAVVVMVVVAFIAFSMFRFMGDPVANMMGPDATMADRQAMRERLGLDRPF
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCHHHHHHHHHHHHCCCCCC
PIQFGHFIEDISQGNFGVSFRVGRPVIDLIGERLPATLELAFVSGLFALAFGLGFGVYTA
CCHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
LRRSGLVSRAIMAISLIGVSLPTFLIGIGLIYLFAVELRWLPSFGRGDVVRIGGWTTGFL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCHHHHH
TRSGLASLVLPAITLGLFQMTLIMRLVRAEMLEVLRQDYIRFARARGLTDRAVHFRHALK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
NTLVPVITVMGLQLGSIVAFSIITETVFQWPGIGSLFISSVQAVDIPVMATYLLFVAGFF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
VAVNLIVDLLYFAVDPRLRGSGGH
HHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MLAFLLRRIFEAVVVMVVVAFIAFSMFRFMGDPVANMMGPDATMADRQAMRERLGLDRPF
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCHHHHHHHHHHHHCCCCCC
PIQFGHFIEDISQGNFGVSFRVGRPVIDLIGERLPATLELAFVSGLFALAFGLGFGVYTA
CCHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
LRRSGLVSRAIMAISLIGVSLPTFLIGIGLIYLFAVELRWLPSFGRGDVVRIGGWTTGFL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCHHHHH
TRSGLASLVLPAITLGLFQMTLIMRLVRAEMLEVLRQDYIRFARARGLTDRAVHFRHALK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
NTLVPVITVMGLQLGSIVAFSIITETVFQWPGIGSLFISSVQAVDIPVMATYLLFVAGFF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
VAVNLIVDLLYFAVDPRLRGSGGH
HHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9163424; 8796346 [H]