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The map label for this gene is ddpC [H]

Identifier: 158423581

GI number: 158423581

Start: 2258714

End: 2259562

Strand: Reverse

Name: ddpC [H]

Synonym: AZC_1957

Alternate gene names: 158423581

Gene position: 2259562-2258714 (Counterclockwise)

Preceding gene: 158423582

Following gene: 158423580

Centisome position: 42.08

GC content: 68.67

Gene sequence:

>849_bases
ATGAGCACCGCAACCTTGCGCCATGCCGCCTTCGTGCTGCGCGGCAATCCCCTCACCGCCATCGCCGCCTTCGCGACGGG
CCTGCTCGTGCTCGTCGCCCTCTTCGGCCCGGTGCTGGTGCCTTATGATCCCATCGCTTCCGATGTCGCCCATGCGCTCG
AGGCACCAAGCGCCGCCCACTGGGCGGGCACGGACCAATTGGGTCGCGACGTCTTCAGCCGCCTCGTCGTGGCGGCGCGG
CTGGATCTCGCCATCGCCGCCTCGGCGGTGGTGCTGTCGTTTGCGCTCGGCGCGGTGATCGGCAGCATCTGCGGCTATGC
GGGCGGGCGGCTCGACCGCGCGGTGGGCCGTTTCGTGGACGTGCTGATGGCCTTCCCGCTGTTCGTGCTCGCCATGGCCA
TGGTGGCGGCGCTGGGCAACCGGGTGGAAAACATCGTCATCGCCACGGCGATCATCAACCTGCCCTTCTACATCCGCTTT
GCCCGTGCCGAGGTGAACGTGCGCCGCTCCGCCGGCTGGGTGGAGGCCGCGCGCGCCTGCGGCGACAGCCATCTCTCGGT
GGTGCTGCGCTTCCTCCTGCCCAACATCCTGCCGGCCATGGCGGTGCAGATCTCGCTCAACCTCGGCTGGGCGATCCTGA
ATGCGGCTGGGCTCTCCTTCATCGGCCTCGGCGTGAAGCCGCCGACACCGGAATGGGGGATCATGGTGGCGGAGGGGGCA
CGCTTCATCTCCACCGGCAAGTGGTGGCTGGTGGCCTTCCCCGGCCTCGCGCTGATGCTGTGCGTGCTGTGCTTCAACCT
GCTGGGTGACGGCCTGCGCGACATTCTGGACCCGAGGATGCGCACATGA

Upstream 100 bases:

>100_bases
CGGTGCAGGGCTTCGTGCTGCTGATGGCCTTCATCTTCGTCCTCGTGAACCTGGTGATCGACATTCTCTACGGCATCGCC
GACCCCCGGATTTCGGTCGA

Downstream 100 bases:

>100_bases
CCCAATCCCTCCTGCGCATCGAGGATCTCGCCGTCACCTTCTCCACCCGGCGCGGGCCAGTGGAGGCGGTGAAGGGTATC
GACCTTGACCTTGCCCCCGG

Product: ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 282; Mature: 281

Protein sequence:

>282_residues
MSTATLRHAAFVLRGNPLTAIAAFATGLLVLVALFGPVLVPYDPIASDVAHALEAPSAAHWAGTDQLGRDVFSRLVVAAR
LDLAIAASAVVLSFALGAVIGSICGYAGGRLDRAVGRFVDVLMAFPLFVLAMAMVAALGNRVENIVIATAIINLPFYIRF
ARAEVNVRRSAGWVEAARACGDSHLSVVLRFLLPNILPAMAVQISLNLGWAILNAAGLSFIGLGVKPPTPEWGIMVAEGA
RFISTGKWWLVAFPGLALMLCVLCFNLLGDGLRDILDPRMRT

Sequences:

>Translated_282_residues
MSTATLRHAAFVLRGNPLTAIAAFATGLLVLVALFGPVLVPYDPIASDVAHALEAPSAAHWAGTDQLGRDVFSRLVVAAR
LDLAIAASAVVLSFALGAVIGSICGYAGGRLDRAVGRFVDVLMAFPLFVLAMAMVAALGNRVENIVIATAIINLPFYIRF
ARAEVNVRRSAGWVEAARACGDSHLSVVLRFLLPNILPAMAVQISLNLGWAILNAAGLSFIGLGVKPPTPEWGIMVAEGA
RFISTGKWWLVAFPGLALMLCVLCFNLLGDGLRDILDPRMRT
>Mature_281_residues
STATLRHAAFVLRGNPLTAIAAFATGLLVLVALFGPVLVPYDPIASDVAHALEAPSAAHWAGTDQLGRDVFSRLVVAARL
DLAIAASAVVLSFALGAVIGSICGYAGGRLDRAVGRFVDVLMAFPLFVLAMAMVAALGNRVENIVIATAIINLPFYIRFA
RAEVNVRRSAGWVEAARACGDSHLSVVLRFLLPNILPAMAVQISLNLGWAILNAAGLSFIGLGVKPPTPEWGIMVAEGAR
FISTGKWWLVAFPGLALMLCVLCFNLLGDGLRDILDPRMRT

Specific function: Part of the ABC transporter complex ddpABCDF, which is probably involved in D,D-dipeptide transport. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1173

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787760, Length=269, Percent_Identity=42.7509293680297, Blast_Score=222, Evalue=2e-59,
Organism=Escherichia coli, GI1787054, Length=270, Percent_Identity=42.2222222222222, Blast_Score=203, Evalue=1e-53,
Organism=Escherichia coli, GI1789889, Length=243, Percent_Identity=41.9753086419753, Blast_Score=182, Evalue=2e-47,
Organism=Escherichia coli, GI1789964, Length=260, Percent_Identity=42.3076923076923, Blast_Score=174, Evalue=8e-45,
Organism=Escherichia coli, GI1787498, Length=259, Percent_Identity=32.8185328185328, Blast_Score=129, Evalue=3e-31,
Organism=Escherichia coli, GI1787549, Length=275, Percent_Identity=31.2727272727273, Blast_Score=117, Evalue=1e-27,
Organism=Escherichia coli, GI1788505, Length=224, Percent_Identity=27.2321428571429, Blast_Score=91, Evalue=8e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 29828; Mature: 29697

Theoretical pI: Translated: 9.00; Mature: 9.00

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTATLRHAAFVLRGNPLTAIAAFATGLLVLVALFGPVLVPYDPIASDVAHALEAPSAAH
CCCCHHHHHHHEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCC
WAGTDQLGRDVFSRLVVAARLDLAIAASAVVLSFALGAVIGSICGYAGGRLDRAVGRFVD
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
VLMAFPLFVLAMAMVAALGNRVENIVIATAIINLPFYIRFARAEVNVRRSAGWVEAARAC
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEEHHHHHHHHHHCHHHHHHHHC
GDSHLSVVLRFLLPNILPAMAVQISLNLGWAILNAAGLSFIGLGVKPPTPEWGIMVAEGA
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCHHHEECCCCCCCCCCCEEEECCC
RFISTGKWWLVAFPGLALMLCVLCFNLLGDGLRDILDPRMRT
EEHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
STATLRHAAFVLRGNPLTAIAAFATGLLVLVALFGPVLVPYDPIASDVAHALEAPSAAH
CCCHHHHHHHEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCC
WAGTDQLGRDVFSRLVVAARLDLAIAASAVVLSFALGAVIGSICGYAGGRLDRAVGRFVD
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
VLMAFPLFVLAMAMVAALGNRVENIVIATAIINLPFYIRFARAEVNVRRSAGWVEAARAC
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEEHHHHHHHHHHCHHHHHHHHC
GDSHLSVVLRFLLPNILPAMAVQISLNLGWAILNAAGLSFIGLGVKPPTPEWGIMVAEGA
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCHHHEECCCCCCCCCCCEEEECCC
RFISTGKWWLVAFPGLALMLCVLCFNLLGDGLRDILDPRMRT
EEHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 9751644 [H]