| Definition | Azorhizobium caulinodans ORS 571, complete genome. |
|---|---|
| Accession | NC_009937 |
| Length | 5,369,772 |
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The map label for this gene is ykvO [H]
Identifier: 158423332
GI number: 158423332
Start: 1955703
End: 1956452
Strand: Direct
Name: ykvO [H]
Synonym: AZC_1708
Alternate gene names: 158423332
Gene position: 1955703-1956452 (Clockwise)
Preceding gene: 158423330
Following gene: 158423333
Centisome position: 36.42
GC content: 68.27
Gene sequence:
>750_bases ATGACGACGTTCCAGAACAAGGTGGTGGTGGTCACCGGCGGCACCAGCGGCATCGGCCTTGCGACCGCGAAGGCGTTTTC CGCCGCCGGCGCGTCCGTCTTCATCACCGGCCGCCGGCAGGAGGCGCTCGATGCCGCCGTGAAGGCAATCGGCGGGCAAG TGACGGGCGTGCGCGGCGACATGTCGAAGCTGGCCGATATCGACCGCCTCTATGACGCAGTCCAGCAGCGCCACGCGCAG ATCGACGTGCTGTTCGCCAATGCCGGCGGCGGCGGATTTGCGCCGCTCGGCGCCATCGACGAAACCCACTTCGACGAGAC CTTCGCGACGAACGTGAAGGGCGTGCTCTTCACGGTGCAGAAGGCGCTCCCGCTGCTGAAGGACGGGGGCGCGGTCGTCC TGACCGGCTCGACCGCAGGCGCCTCGGGCACCCCGGCCTTCAGCGTCTACGGCGCCACCAAGGCGGCGGTGCGCAGCTTC GCCCGCAATTGGGTCCTCGACCTGAAGGATCGGCACATCCGGGTAAATGTGGTGAGCCCCGGTCCGATCGACACGGCTGG CCTCAACGAACTGTTCGGCGGCGGAGCTGAGGCGGACGGGGTGAAGGCGGGCCTGGTCGGTGCCATTCCGTCCGGTCGCG TGGGCCAGCCGGAGGAGGTGGCGCAGGCCGTCCTGTTCCTCGCTTCTGACGCGGCGAGCTTCATCAATGGCGCCGAACTG TTCGTCGATGGCGGCATGACGCAGATCTGA
Upstream 100 bases:
>100_bases CGTGCCACATCTGGCGGCTACAGGCATCAGCGTTCCGGATCTAACTCTTGTCCATCAGCGACGGCCTCAGCCGCCGCAAC CATCGACAGGAGACAGGATC
Downstream 100 bases:
>100_bases GGGGAGGACGCCGTGACAGACACCATCCAGACCCTCCTGCGCCGGAACCTCCACGAGGTGTTCGGCACGCGCGATACGGC CCGACGCCGGGCGGCGATCG
Product: short-chain dehydrogenase/reductase SDR precursor
Products: (3R)-hydroxyacyl-[acyl-carrier-protein]; NADP; NADPH; Proton; beta-ketoacyl-ACP [C]
Alternate protein names: NA
Number of amino acids: Translated: 249; Mature: 248
Protein sequence:
>249_residues MTTFQNKVVVVTGGTSGIGLATAKAFSAAGASVFITGRRQEALDAAVKAIGGQVTGVRGDMSKLADIDRLYDAVQQRHAQ IDVLFANAGGGGFAPLGAIDETHFDETFATNVKGVLFTVQKALPLLKDGGAVVLTGSTAGASGTPAFSVYGATKAAVRSF ARNWVLDLKDRHIRVNVVSPGPIDTAGLNELFGGGAEADGVKAGLVGAIPSGRVGQPEEVAQAVLFLASDAASFINGAEL FVDGGMTQI
Sequences:
>Translated_249_residues MTTFQNKVVVVTGGTSGIGLATAKAFSAAGASVFITGRRQEALDAAVKAIGGQVTGVRGDMSKLADIDRLYDAVQQRHAQ IDVLFANAGGGGFAPLGAIDETHFDETFATNVKGVLFTVQKALPLLKDGGAVVLTGSTAGASGTPAFSVYGATKAAVRSF ARNWVLDLKDRHIRVNVVSPGPIDTAGLNELFGGGAEADGVKAGLVGAIPSGRVGQPEEVAQAVLFLASDAASFINGAEL FVDGGMTQI >Mature_248_residues TTFQNKVVVVTGGTSGIGLATAKAFSAAGASVFITGRRQEALDAAVKAIGGQVTGVRGDMSKLADIDRLYDAVQQRHAQI DVLFANAGGGGFAPLGAIDETHFDETFATNVKGVLFTVQKALPLLKDGGAVVLTGSTAGASGTPAFSVYGATKAAVRSFA RNWVLDLKDRHIRVNVVSPGPIDTAGLNELFGGGAEADGVKAGLVGAIPSGRVGQPEEVAQAVLFLASDAASFINGAELF VDGGMTQI
Specific function: Fatty acid biosynthesis pathway; first reduction step. [C]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI32483357, Length=248, Percent_Identity=33.4677419354839, Blast_Score=126, Evalue=1e-29, Organism=Homo sapiens, GI5031737, Length=250, Percent_Identity=32, Blast_Score=108, Evalue=4e-24, Organism=Homo sapiens, GI126723750, Length=251, Percent_Identity=30.2788844621514, Blast_Score=107, Evalue=1e-23, Organism=Homo sapiens, GI19923817, Length=253, Percent_Identity=28.0632411067194, Blast_Score=100, Evalue=2e-21, Organism=Homo sapiens, GI40254992, Length=246, Percent_Identity=30.0813008130081, Blast_Score=97, Evalue=2e-20, Organism=Homo sapiens, GI10190704, Length=251, Percent_Identity=33.8645418326693, Blast_Score=96, Evalue=3e-20, Organism=Homo sapiens, GI66933014, Length=244, Percent_Identity=28.2786885245902, Blast_Score=92, Evalue=3e-19, Organism=Homo sapiens, GI33667109, Length=188, Percent_Identity=33.5106382978723, Blast_Score=92, Evalue=4e-19, Organism=Homo sapiens, GI126723191, Length=181, Percent_Identity=33.1491712707182, Blast_Score=92, Evalue=5e-19, Organism=Homo sapiens, GI7705925, Length=241, Percent_Identity=31.5352697095436, Blast_Score=91, Evalue=1e-18, Organism=Homo sapiens, GI59889578, Length=227, Percent_Identity=33.0396475770925, Blast_Score=86, Evalue=3e-17, Organism=Homo sapiens, GI109715829, Length=248, Percent_Identity=27.8225806451613, Blast_Score=77, Evalue=1e-14, Organism=Homo sapiens, GI4503301, Length=250, Percent_Identity=29.6, Blast_Score=77, Evalue=1e-14, Organism=Homo sapiens, GI20149619, Length=238, Percent_Identity=31.5126050420168, Blast_Score=77, Evalue=1e-14, Organism=Homo sapiens, GI4503817, Length=227, Percent_Identity=25.1101321585903, Blast_Score=69, Evalue=5e-12, Organism=Homo sapiens, GI15277342, Length=263, Percent_Identity=27.7566539923954, Blast_Score=68, Evalue=9e-12, Organism=Homo sapiens, GI223718074, Length=205, Percent_Identity=29.7560975609756, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI7657478, Length=241, Percent_Identity=28.2157676348548, Blast_Score=66, Evalue=3e-11, Organism=Escherichia coli, GI1787335, Length=250, Percent_Identity=31.2, Blast_Score=116, Evalue=2e-27, Organism=Escherichia coli, GI1787905, Length=247, Percent_Identity=33.1983805668016, Blast_Score=107, Evalue=5e-25, Organism=Escherichia coli, GI1786812, Length=255, Percent_Identity=34.5098039215686, Blast_Score=105, Evalue=2e-24, Organism=Escherichia coli, GI1789378, Length=248, Percent_Identity=31.0483870967742, Blast_Score=105, Evalue=4e-24, Organism=Escherichia coli, GI1790717, Length=245, Percent_Identity=28.9795918367347, Blast_Score=100, Evalue=9e-23, Organism=Escherichia coli, GI2367365, Length=246, Percent_Identity=33.3333333333333, Blast_Score=97, Evalue=8e-22, Organism=Escherichia coli, GI87082100, Length=254, Percent_Identity=26.7716535433071, Blast_Score=93, Evalue=2e-20, Organism=Escherichia coli, GI1787820, Length=243, Percent_Identity=30.0411522633745, Blast_Score=92, Evalue=4e-20, Organism=Escherichia coli, GI2367175, Length=252, Percent_Identity=31.7460317460317, Blast_Score=91, Evalue=1e-19, Organism=Escherichia coli, GI1789208, Length=248, Percent_Identity=28.2258064516129, Blast_Score=84, Evalue=6e-18, Organism=Escherichia coli, GI1788459, Length=250, Percent_Identity=30.4, Blast_Score=79, Evalue=3e-16, Organism=Escherichia coli, GI1786701, Length=183, Percent_Identity=30.6010928961749, Blast_Score=77, Evalue=8e-16, Organism=Escherichia coli, GI87082160, Length=254, Percent_Identity=25.9842519685039, Blast_Score=73, Evalue=2e-14, Organism=Caenorhabditis elegans, GI17560676, Length=249, Percent_Identity=32.9317269076305, Blast_Score=126, Evalue=1e-29, Organism=Caenorhabditis elegans, GI17559104, Length=266, Percent_Identity=32.7067669172932, Blast_Score=119, Evalue=1e-27, Organism=Caenorhabditis elegans, GI17562910, Length=268, Percent_Identity=34.3283582089552, Blast_Score=117, Evalue=4e-27, Organism=Caenorhabditis elegans, GI17561402, Length=250, Percent_Identity=31.2, Blast_Score=115, Evalue=2e-26, Organism=Caenorhabditis elegans, GI17565030, Length=264, Percent_Identity=33.7121212121212, Blast_Score=114, Evalue=5e-26, Organism=Caenorhabditis elegans, GI17562906, Length=271, Percent_Identity=33.210332103321, Blast_Score=113, Evalue=9e-26, Organism=Caenorhabditis elegans, GI17562904, Length=266, Percent_Identity=33.8345864661654, Blast_Score=112, Evalue=1e-25, Organism=Caenorhabditis elegans, GI193204405, Length=262, Percent_Identity=34.7328244274809, Blast_Score=112, Evalue=2e-25, Organism=Caenorhabditis elegans, GI17560332, Length=270, Percent_Identity=34.4444444444444, Blast_Score=109, Evalue=1e-24, Organism=Caenorhabditis elegans, GI17560220, Length=262, Percent_Identity=32.824427480916, Blast_Score=108, Evalue=3e-24, Organism=Caenorhabditis elegans, GI17563726, Length=266, Percent_Identity=33.8345864661654, Blast_Score=105, Evalue=2e-23, Organism=Caenorhabditis elegans, GI17562908, Length=266, Percent_Identity=32.7067669172932, Blast_Score=104, Evalue=3e-23, Organism=Caenorhabditis elegans, GI17560150, Length=262, Percent_Identity=30.5343511450382, Blast_Score=104, Evalue=3e-23, Organism=Caenorhabditis elegans, GI17538486, Length=267, Percent_Identity=32.5842696629214, Blast_Score=102, Evalue=2e-22, Organism=Caenorhabditis elegans, GI17562990, Length=264, Percent_Identity=32.5757575757576, Blast_Score=102, Evalue=3e-22, Organism=Caenorhabditis elegans, GI17531453, Length=262, Percent_Identity=31.2977099236641, Blast_Score=99, Evalue=1e-21, Organism=Caenorhabditis elegans, GI17536651, Length=253, Percent_Identity=29.6442687747036, Blast_Score=99, Evalue=2e-21, Organism=Caenorhabditis elegans, GI17551412, Length=265, Percent_Identity=31.3207547169811, Blast_Score=97, Evalue=6e-21, Organism=Caenorhabditis elegans, GI17555706, Length=254, Percent_Identity=30.7086614173228, Blast_Score=97, Evalue=9e-21, Organism=Caenorhabditis elegans, GI72000259, Length=263, Percent_Identity=31.5589353612167, Blast_Score=97, Evalue=9e-21, Organism=Caenorhabditis elegans, GI17536025, Length=254, Percent_Identity=31.1023622047244, Blast_Score=97, Evalue=1e-20, Organism=Caenorhabditis elegans, GI17538480, Length=262, Percent_Identity=31.6793893129771, Blast_Score=96, Evalue=2e-20, Organism=Caenorhabditis elegans, GI17544670, Length=262, Percent_Identity=29.3893129770992, Blast_Score=93, Evalue=1e-19, Organism=Caenorhabditis elegans, GI115534694, Length=251, Percent_Identity=30.6772908366534, Blast_Score=92, Evalue=3e-19, Organism=Caenorhabditis elegans, GI71994604, Length=255, Percent_Identity=30.5882352941176, Blast_Score=87, Evalue=6e-18, Organism=Caenorhabditis elegans, GI17561272, Length=238, Percent_Identity=29.4117647058824, Blast_Score=87, Evalue=1e-17, Organism=Caenorhabditis elegans, GI71994600, Length=254, Percent_Identity=30.3149606299213, Blast_Score=86, Evalue=1e-17, Organism=Caenorhabditis elegans, GI25147288, Length=251, Percent_Identity=29.8804780876494, Blast_Score=80, Evalue=8e-16, Organism=Caenorhabditis elegans, GI17538182, Length=254, Percent_Identity=27.9527559055118, Blast_Score=67, Evalue=6e-12, Organism=Caenorhabditis elegans, GI193207185, Length=141, Percent_Identity=36.1702127659575, Blast_Score=66, Evalue=2e-11, Organism=Saccharomyces cerevisiae, GI6324126, Length=256, Percent_Identity=28.90625, Blast_Score=92, Evalue=6e-20, Organism=Saccharomyces cerevisiae, GI6323882, Length=190, Percent_Identity=31.0526315789474, Blast_Score=79, Evalue=6e-16, Organism=Saccharomyces cerevisiae, GI6322067, Length=175, Percent_Identity=30.8571428571429, Blast_Score=71, Evalue=2e-13, Organism=Saccharomyces cerevisiae, GI6322227, Length=192, Percent_Identity=26.0416666666667, Blast_Score=68, Evalue=2e-12, Organism=Saccharomyces cerevisiae, GI6322226, Length=185, Percent_Identity=29.1891891891892, Blast_Score=62, Evalue=9e-11, Organism=Drosophila melanogaster, GI23397609, Length=245, Percent_Identity=37.9591836734694, Blast_Score=128, Evalue=3e-30, Organism=Drosophila melanogaster, GI28571526, Length=256, Percent_Identity=35.546875, Blast_Score=122, Evalue=2e-28, Organism=Drosophila melanogaster, GI24644339, Length=253, Percent_Identity=35.9683794466403, Blast_Score=121, Evalue=4e-28, Organism=Drosophila melanogaster, GI21357041, Length=259, Percent_Identity=35.5212355212355, Blast_Score=118, Evalue=3e-27, Organism=Drosophila melanogaster, GI24643142, Length=250, Percent_Identity=33.2, Blast_Score=117, Evalue=6e-27, Organism=Drosophila melanogaster, GI21355319, Length=256, Percent_Identity=31.640625, Blast_Score=117, Evalue=8e-27, Organism=Drosophila melanogaster, GI24644337, Length=253, Percent_Identity=35.5731225296443, Blast_Score=106, Evalue=1e-23, Organism=Drosophila melanogaster, GI24639444, Length=248, Percent_Identity=31.4516129032258, Blast_Score=98, Evalue=4e-21, Organism=Drosophila melanogaster, GI24663911, Length=211, Percent_Identity=28.9099526066351, Blast_Score=79, Evalue=2e-15, Organism=Drosophila melanogaster, GI116007236, Length=201, Percent_Identity=27.8606965174129, Blast_Score=76, Evalue=2e-14, Organism=Drosophila melanogaster, GI281364494, Length=201, Percent_Identity=29.8507462686567, Blast_Score=75, Evalue=4e-14, Organism=Drosophila melanogaster, GI24641232, Length=243, Percent_Identity=27.5720164609054, Blast_Score=75, Evalue=4e-14, Organism=Drosophila melanogaster, GI21358495, Length=232, Percent_Identity=27.1551724137931, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI24648944, Length=239, Percent_Identity=29.7071129707113, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI116007238, Length=205, Percent_Identity=26.3414634146341, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI24640442, Length=190, Percent_Identity=29.4736842105263, Blast_Score=66, Evalue=2e-11, Organism=Drosophila melanogaster, GI17737361, Length=261, Percent_Identity=26.0536398467433, Blast_Score=66, Evalue=3e-11, Organism=Drosophila melanogaster, GI21356301, Length=229, Percent_Identity=27.0742358078603, Blast_Score=65, Evalue=6e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.1.1.100 [C]
Molecular weight: Translated: 25292; Mature: 25161
Theoretical pI: Translated: 5.71; Mature: 5.71
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 0.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTFQNKVVVVTGGTSGIGLATAKAFSAAGASVFITGRRQEALDAAVKAIGGQVTGVRGD CCCCCCEEEEEECCCCCCCHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHCCCEECCCCC MSKLADIDRLYDAVQQRHAQIDVLFANAGGGGFAPLGAIDETHFDETFATNVKGVLFTVQ HHHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCCCCCCCCCCCHHHHCCCHHHHHHHH KALPLLKDGGAVVLTGSTAGASGTPAFSVYGATKAAVRSFARNWVLDLKDRHIRVNVVSP HHHHHCCCCCEEEEECCCCCCCCCCCEEEECCHHHHHHHHHHHCEEEECCCEEEEEEECC GPIDTAGLNELFGGGAEADGVKAGLVGAIPSGRVGQPEEVAQAVLFLASDAASFINGAEL CCCCCCCHHHHHCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEE FVDGGMTQI EEECCCCCC >Mature Secondary Structure TTFQNKVVVVTGGTSGIGLATAKAFSAAGASVFITGRRQEALDAAVKAIGGQVTGVRGD CCCCCEEEEEECCCCCCCHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHCCCEECCCCC MSKLADIDRLYDAVQQRHAQIDVLFANAGGGGFAPLGAIDETHFDETFATNVKGVLFTVQ HHHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCCCCCCCCCCCHHHHCCCHHHHHHHH KALPLLKDGGAVVLTGSTAGASGTPAFSVYGATKAAVRSFARNWVLDLKDRHIRVNVVSP HHHHHCCCCCEEEEECCCCCCCCCCCEEEECCHHHHHHHHHHHCEEEECCCEEEEEEECC GPIDTAGLNELFGGGAEADGVKAGLVGAIPSGRVGQPEEVAQAVLFLASDAASFINGAEL CCCCCCCHHHHHCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEE FVDGGMTQI EEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NADPH [C]
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: Oxoacyl-[acyl-carrier-protein]; NADPH; D-3-hydroxy-acyl-ACP; NADP [C]
Specific reaction: Oxoacyl-[acyl-carrier-protein] + NADPH = (3R)-hydroxyacyl-[acyl-carrier-protein] + NADP+ D-3-hydroxy-acyl-ACP + NADP = NADPH + Proton + beta-ketoacyl-ACP [C]
General reaction: Redox reaction [C]
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]