Click here to switch to the map view.

The map label for this gene is smpB

Identifier: 158422868

GI number: 158422868

Start: 1395030

End: 1395512

Strand: Direct

Name: smpB

Synonym: AZC_1244

Alternate gene names: 158422868

Gene position: 1395030-1395512 (Clockwise)

Preceding gene: 158422867

Following gene: 158422869

Centisome position: 25.98

GC content: 63.77

Gene sequence:

>483_bases
GTGATGGCTGAGAAGAAGAAAAAGGAGCTGCCCCGCAAGGTGGTCGCCGACAACCGGCGGGCGCGCTTCGACTATGACAT
CGGCGAGGTGTTCGAGGCGGGCATCGCGCTGAAGGGCACCGAGGTGAAGGCGCTGCGCACCGGCAAGGCGACGATCCACG
AGAGCTATGCCGGCGGCAAGAATGGCGAGCTGTGGCTCTTCAATTCCTACGTGCCGGAATATCTGGAAGCCAACCGCTTC
AATCACGAGCCGCGCCGCCCGCGCAAACTGCTGATGCACAAGCGGCAGATCCACAAGCTCACCGTGGCAGTGGAGCGCGA
GGGCATGACCGTGGTGCCGCTGAAAATCTATTTCAACGAGCAGGGCCGGGCGAAGGTGGAAGTGGCCCTCGCCAAGGGCC
GCAAGGCCCATGACAAACGCGAGGCGGTGAAGGAGCGGGACTGGAACCGCGACAAAGCCCGCCTGATGCGCGATCGCGGC
TGA

Upstream 100 bases:

>100_bases
CCTCATCAACTGATCCTGCGCCGGGCCGGATGGCGACATCCGGCCGCGTCCGCGCTGCCGAGGGCGGGGCGCCACCCGTG
CCCCGTCCCGTTTCGAGAGT

Downstream 100 bases:

>100_bases
GACGGCCATGTCGGTCGGCCCCGTGATCCGCCGCGCCGGCCCGGTCGACGCCCGGCGTCTCGGGGCGGCTGGCCCGGCAC
TTTATGCGGAAAGCTACGCC

Product: SsrA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 160; Mature: 160

Protein sequence:

>160_residues
MMAEKKKKELPRKVVADNRRARFDYDIGEVFEAGIALKGTEVKALRTGKATIHESYAGGKNGELWLFNSYVPEYLEANRF
NHEPRRPRKLLMHKRQIHKLTVAVEREGMTVVPLKIYFNEQGRAKVEVALAKGRKAHDKREAVKERDWNRDKARLMRDRG

Sequences:

>Translated_160_residues
MMAEKKKKELPRKVVADNRRARFDYDIGEVFEAGIALKGTEVKALRTGKATIHESYAGGKNGELWLFNSYVPEYLEANRF
NHEPRRPRKLLMHKRQIHKLTVAVEREGMTVVPLKIYFNEQGRAKVEVALAKGRKAHDKREAVKERDWNRDKARLMRDRG
>Mature_160_residues
MMAEKKKKELPRKVVADNRRARFDYDIGEVFEAGIALKGTEVKALRTGKATIHESYAGGKNGELWLFNSYVPEYLEANRF
NHEPRRPRKLLMHKRQIHKLTVAVEREGMTVVPLKIYFNEQGRAKVEVALAKGRKAHDKREAVKERDWNRDKARLMRDRG

Specific function: Binds specifically to the ssrA RNA (tmRNA) and is required for stable association of ssrA with ribosomes

COG id: COG0691

COG function: function code O; tmRNA-binding protein

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the smpB family

Homologues:

Organism=Escherichia coli, GI1788973, Length=158, Percent_Identity=44.3037974683544, Blast_Score=128, Evalue=2e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SSRP_AZOC5 (A8I0D5)

Other databases:

- EMBL:   AP009384
- RefSeq:   YP_001524160.1
- ProteinModelPortal:   A8I0D5
- SMR:   A8I0D5
- GeneID:   5690651
- GenomeReviews:   AP009384_GR
- KEGG:   azc:AZC_1244
- HOGENOM:   HBG293422
- OMA:   EKYEAGI
- ProtClustDB:   PRK05422
- BioCyc:   ACAU438753:AZC_1244-MONOMER
- GO:   GO:0005737
- GO:   GO:0006412
- HAMAP:   MF_00023
- InterPro:   IPR000037
- InterPro:   IPR020081
- Gene3D:   G3DSA:2.40.280.10
- ProDom:   PD004488
- TIGRFAMs:   TIGR00086

Pfam domain/function: PF01668 SmpB; SSF74982 SmpB

EC number: NA

Molecular weight: Translated: 18657; Mature: 18657

Theoretical pI: Translated: 10.80; Mature: 10.80

Prosite motif: PS01317 SSRP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMAEKKKKELPRKVVADNRRARFDYDIGEVFEAGIALKGTEVKALRTGKATIHESYAGGK
CCCCCHHHHCCHHHHCCCCCCEECCCHHHHHHCCEEECCCEEEEEECCCHHHHHHCCCCC
NGELWLFNSYVPEYLEANRFNHEPRRPRKLLMHKRQIHKLTVAVEREGMTVVPLKIYFNE
CCCEEEECCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHEEEEEECCCCEEEEEEEEECC
QGRAKVEVALAKGRKAHDKREAVKERDWNRDKARLMRDRG
CCCEEEEEEECCCCCCHHHHHHHHHCCCCHHHHHHHHCCC
>Mature Secondary Structure
MMAEKKKKELPRKVVADNRRARFDYDIGEVFEAGIALKGTEVKALRTGKATIHESYAGGK
CCCCCHHHHCCHHHHCCCCCCEECCCHHHHHHCCEEECCCEEEEEECCCHHHHHHCCCCC
NGELWLFNSYVPEYLEANRFNHEPRRPRKLLMHKRQIHKLTVAVEREGMTVVPLKIYFNE
CCCEEEECCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHEEEEEECCCCEEEEEEEEECC
QGRAKVEVALAKGRKAHDKREAVKERDWNRDKARLMRDRG
CCCEEEEEEECCCCCCHHHHHHHHHCCCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA