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The map label for this gene is mdcF [H]

Identifier: 158422853

GI number: 158422853

Start: 1378901

End: 1379860

Strand: Direct

Name: mdcF [H]

Synonym: AZC_1229

Alternate gene names: 158422853

Gene position: 1378901-1379860 (Clockwise)

Preceding gene: 158422852

Following gene: 158422855

Centisome position: 25.68

GC content: 65.94

Gene sequence:

>960_bases
ATGACGGACCTGTTCGGCCTCGCCTTTCCCTTCTTCGGACTGATCTTTCTGGGCTTTGCCTGCGGCCGGCTGGTGCGCCT
GCCGGAAGAAGGGCTCGCCTGGCTGTCCTTCTTCATCATCTATGTGGCGCTGCCGGCACTCTTCTATCGCATCGTTGCCC
AGACGCCATTTTCGGAATTGGCCAACCCGCGCTTCATCCTGGCGGCGGGCCTCTCCACGGCCACCACCGCCGCGCTCGCG
CTCGCCATCGCTTTGTGGTTCAGGCGGGGAAATCTTAAAGAGTCCGCCATCGCCCTGAATGTCGGGGCCTACGCCAACGT
TGGCTACATGGGCCCGGGCCTTTCGCTGGCCGCGCTCGGGGCGGAAGCGGCAACACCGGCGGCCCTGATCTTCGCCTGCG
ACAGCCTGCTGTTCTTCACGCTGGTGCCGCTGCTCATCGCCGTGCACGGGCGCGGAGAGCGCCTCTCAAAGACGCTCGTG
ACCGTCGTGAAGCGGGTGGTGACGCACCCCTTCAACATCGCCACGTTCCTCGGCGTGATCGCCGCCGCCTTCGATCTCCA
TGCGCCCGGTGCCGTGGAGCGGATGCTGGATTTCCTGAAAAATGCGGCCGCGCCCTGTGCGCTCTTTACGCTCGGCGTCA
CCGTCGCGCTGCGGCCGCTGAAGCGCGTGCCGGCGGAACTGCCGGCGCTGCTCGGCCTCAAGCTGTTGGTGCATCCGGCG
CTTGCGCTCACCGTGTTCAGTGCCCTCGGCCCGTTCTCGGACCGCTGGATGGAAACGGCGGTCCTCATGGCCTCGCTCCC
GCCGGCTCTCAACTGTTTCGTGCTGGCGCGGCAATACCGGACCTATATGGAGGAAGCTTCCGCCGGCGTGCTCGTGGGCA
CGGTGCTCTCCGTCGCCACGGTGACCGGCCTGCTCTATCTGATCCAGCAGCATCTCGTGCCGCTGCACCTCTTCCACTGA

Upstream 100 bases:

>100_bases
GGCCCTAGGACTACCGCAGCGCACCGCGCATGGCTGTCGGCTTGGCCTTGCGCGGCAGACCGCTTGCAGCGGCGGGACGA
ACATCGTCTGTTCCGGCGTC

Downstream 100 bases:

>100_bases
GCGGCCTCAGCCGGCGGCAGCGGGCTCGGGCTGGGTCCAAGGCGCCTCGGCGATGAAGGCGCGGCTGTGGAGCACGAAGG
CATCCAGCAGCGCCTTGCCC

Product: auxin efflux carrier

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 319; Mature: 318

Protein sequence:

>319_residues
MTDLFGLAFPFFGLIFLGFACGRLVRLPEEGLAWLSFFIIYVALPALFYRIVAQTPFSELANPRFILAAGLSTATTAALA
LAIALWFRRGNLKESAIALNVGAYANVGYMGPGLSLAALGAEAATPAALIFACDSLLFFTLVPLLIAVHGRGERLSKTLV
TVVKRVVTHPFNIATFLGVIAAAFDLHAPGAVERMLDFLKNAAAPCALFTLGVTVALRPLKRVPAELPALLGLKLLVHPA
LALTVFSALGPFSDRWMETAVLMASLPPALNCFVLARQYRTYMEEASAGVLVGTVLSVATVTGLLYLIQQHLVPLHLFH

Sequences:

>Translated_319_residues
MTDLFGLAFPFFGLIFLGFACGRLVRLPEEGLAWLSFFIIYVALPALFYRIVAQTPFSELANPRFILAAGLSTATTAALA
LAIALWFRRGNLKESAIALNVGAYANVGYMGPGLSLAALGAEAATPAALIFACDSLLFFTLVPLLIAVHGRGERLSKTLV
TVVKRVVTHPFNIATFLGVIAAAFDLHAPGAVERMLDFLKNAAAPCALFTLGVTVALRPLKRVPAELPALLGLKLLVHPA
LALTVFSALGPFSDRWMETAVLMASLPPALNCFVLARQYRTYMEEASAGVLVGTVLSVATVTGLLYLIQQHLVPLHLFH
>Mature_318_residues
TDLFGLAFPFFGLIFLGFACGRLVRLPEEGLAWLSFFIIYVALPALFYRIVAQTPFSELANPRFILAAGLSTATTAALAL
AIALWFRRGNLKESAIALNVGAYANVGYMGPGLSLAALGAEAATPAALIFACDSLLFFTLVPLLIAVHGRGERLSKTLVT
VVKRVVTHPFNIATFLGVIAAAFDLHAPGAVERMLDFLKNAAAPCALFTLGVTVALRPLKRVPAELPALLGLKLLVHPAL
ALTVFSALGPFSDRWMETAVLMASLPPALNCFVLARQYRTYMEEASAGVLVGTVLSVATVTGLLYLIQQHLVPLHLFH

Specific function: Unknown

COG id: COG0679

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the auxin efflux carrier (TC 2.A.69) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004776 [H]

Pfam domain/function: PF03547 Mem_trans [H]

EC number: NA

Molecular weight: Translated: 34119; Mature: 33988

Theoretical pI: Translated: 9.18; Mature: 9.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDLFGLAFPFFGLIFLGFACGRLVRLPEEGLAWLSFFIIYVALPALFYRIVAQTPFSEL
CCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
ANPRFILAAGLSTATTAALALAIALWFRRGNLKESAIALNVGAYANVGYMGPGLSLAALG
CCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCHHHEEEECCCCCCCCCCCCCCHHHHHC
AEAATPAALIFACDSLLFFTLVPLLIAVHGRGERLSKTLVTVVKRVVTHPFNIATFLGVI
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHH
AAAFDLHAPGAVERMLDFLKNAAAPCALFTLGVTVALRPLKRVPAELPALLGLKLLVHPA
HHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
LALTVFSALGPFSDRWMETAVLMASLPPALNCFVLARQYRTYMEEASAGVLVGTVLSVAT
HHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
VTGLLYLIQQHLVPLHLFH
HHHHHHHHHHHCCHHHCCC
>Mature Secondary Structure 
TDLFGLAFPFFGLIFLGFACGRLVRLPEEGLAWLSFFIIYVALPALFYRIVAQTPFSEL
CCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
ANPRFILAAGLSTATTAALALAIALWFRRGNLKESAIALNVGAYANVGYMGPGLSLAALG
CCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCHHHEEEECCCCCCCCCCCCCCHHHHHC
AEAATPAALIFACDSLLFFTLVPLLIAVHGRGERLSKTLVTVVKRVVTHPFNIATFLGVI
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHH
AAAFDLHAPGAVERMLDFLKNAAAPCALFTLGVTVALRPLKRVPAELPALLGLKLLVHPA
HHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
LALTVFSALGPFSDRWMETAVLMASLPPALNCFVLARQYRTYMEEASAGVLVGTVLSVAT
HHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
VTGLLYLIQQHLVPLHLFH
HHHHHHHHHHHCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10858449; 11481430 [H]